Wall clock time and date at job start Mon Mar 30 2020 03:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47387 * 2 1 4 4 C 1.50701 * 109.47100 * 120.00381 * 2 1 3 5 5 H 1.07992 * 120.00489 * 114.12271 * 4 2 1 6 6 C 1.37883 * 119.99610 * 294.11827 * 4 2 1 7 7 N 1.31513 * 119.99746 * 159.45379 * 6 4 2 8 8 Si 1.86798 * 120.00204 * 339.46195 * 6 4 2 9 9 H 1.48499 * 109.47003 * 179.97438 * 8 6 4 10 10 H 1.48499 * 109.47119 * 59.99492 * 8 6 4 11 11 H 1.48505 * 109.47124 * 299.99521 * 8 6 4 12 12 N 1.46902 * 109.47045 * 239.99949 * 2 1 3 13 13 C 1.47447 * 110.99840 * 66.19011 * 12 2 1 14 14 C 1.54317 * 107.23117 * 123.26178 * 13 12 2 15 15 C 1.55147 * 103.02045 * 22.28122 * 14 13 12 16 16 H 1.08997 * 110.98850 * 82.43925 * 15 14 13 17 17 N 1.46895 * 110.98902 * 206.22130 * 15 14 13 18 18 C 1.48539 * 111.00112 * 176.15270 * 17 15 14 19 19 C 1.54926 * 103.23099 * 159.71867 * 18 17 15 20 20 C 1.54599 * 102.92508 * 322.58483 * 19 18 17 21 21 C 1.47903 * 111.00011 * 293.54425 * 17 15 14 22 22 C 1.47838 * 111.00325 * 187.03586 * 12 2 1 23 23 H 1.08994 * 109.47513 * 174.67798 * 1 2 3 24 24 H 1.08999 * 109.47250 * 294.67861 * 1 2 3 25 25 H 1.09001 * 109.47080 * 54.67741 * 1 2 3 26 26 H 0.97000 * 120.00191 * 358.67892 * 7 6 4 27 27 H 1.09007 * 109.88760 * 242.66438 * 13 12 2 28 28 H 1.09003 * 109.88919 * 3.69178 * 13 12 2 29 29 H 1.08998 * 110.70889 * 140.66990 * 14 13 12 30 30 H 1.09006 * 110.70544 * 263.90187 * 14 13 12 31 31 H 1.08997 * 110.66340 * 278.16004 * 18 17 15 32 32 H 1.09004 * 110.66288 * 41.28101 * 18 17 15 33 33 H 1.09004 * 110.72341 * 204.22772 * 19 18 17 34 34 H 1.09003 * 110.72651 * 80.94534 * 19 18 17 35 35 H 1.08997 * 110.31156 * 263.04689 * 20 19 18 36 36 H 1.08996 * 110.31020 * 140.87103 * 20 19 18 37 37 H 1.09002 * 109.91889 * 333.50974 * 21 17 15 38 38 H 1.09001 * 109.91708 * 94.61109 * 21 17 15 39 39 H 1.09002 * 110.37382 * 332.46605 * 22 12 2 40 40 H 1.09001 * 110.37903 * 94.80428 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.5727 -1.6405 1.1342 6 6 1.8020 -0.1730 2.4791 7 7 1.8615 -0.9395 3.5461 8 14 1.4053 1.6439 2.6552 9 1 1.2013 1.9692 4.0897 10 1 0.1677 1.9561 1.8964 11 1 2.5312 2.4506 2.1196 12 7 2.0196 -0.6925 -1.1994 13 6 1.6718 0.0564 -2.4210 14 6 2.9888 0.3416 -3.1729 15 6 3.9462 -0.7507 -2.6277 16 1 3.8010 -1.6947 -3.1529 17 7 5.3461 -0.3139 -2.7134 18 6 6.2557 -1.3198 -2.1076 19 6 7.6301 -0.9793 -2.7363 20 6 7.2595 -0.5828 -4.1839 21 6 5.7743 -0.1803 -4.1228 22 6 3.4877 -0.8604 -1.1522 23 1 -0.3634 -1.0231 -0.0953 24 1 -0.3634 0.4291 0.9338 25 1 -0.3633 0.5942 -0.8385 26 1 2.0485 -1.8867 3.4530 27 1 1.0096 -0.5419 -3.0468 28 1 1.1834 0.9939 -2.1548 29 1 2.8504 0.2310 -4.2484 30 1 3.3626 1.3369 -2.9318 31 1 6.2891 -1.2051 -1.0242 32 1 5.9480 -2.3296 -2.3792 33 1 8.2837 -1.8517 -2.7306 34 1 8.0964 -0.1433 -2.2148 35 1 7.3942 -1.4312 -4.8548 36 1 7.8668 0.2605 -4.5124 37 1 5.1836 -0.8435 -4.7548 38 1 5.6525 0.8518 -4.4517 39 1 3.9410 -0.0699 -0.5541 40 1 3.7449 -1.8389 -0.7467 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000217368858.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:51 Heat of formation + Delta-G solvation = 8.188596 kcal Electronic energy + Delta-G solvation = -17908.654506 eV Core-core repulsion = 15336.932905 eV Total energy + Delta-G solvation = -2571.721601 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 238.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.40537 -37.51095 -33.84536 -31.96555 -30.29239 -29.23018 -28.15144 -26.59461 -24.52473 -21.95065 -21.50846 -20.52799 -19.79233 -18.93433 -17.45126 -16.18107 -15.97251 -15.27582 -14.35562 -13.88239 -13.59505 -13.38153 -13.06410 -13.03044 -12.58345 -12.38175 -12.12760 -11.76667 -11.60857 -11.38313 -11.17474 -10.95502 -10.83635 -10.63136 -10.53408 -10.36087 -10.31939 -10.14360 -10.00503 -9.70045 -8.82211 -8.29499 -8.19509 -7.29963 -6.42735 -3.99045 3.41570 3.46017 3.63235 4.01614 4.53039 4.62755 4.65371 4.88663 5.03648 5.10531 5.21409 5.29070 5.30834 5.45947 5.53530 5.63752 5.71985 5.76158 5.80314 5.91860 6.01094 6.08994 6.13597 6.18313 6.24404 6.42581 6.51036 6.56033 6.64994 6.67873 6.82679 6.97919 7.01934 7.25575 7.40928 7.76197 8.08370 8.37389 8.47805 9.02839 9.66904 10.97340 Molecular weight = 238.17amu Principal moments of inertia in cm(-1) A = 0.029792 B = 0.006757 C = 0.006085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.619692 B = 4142.948564 C = 4600.189031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.185 3.815 3 H -0.009 1.009 4 C -0.594 4.594 5 H 0.062 0.938 6 C 0.034 3.966 7 N -0.903 5.903 8 Si 1.039 2.961 9 H -0.285 1.285 10 H -0.277 1.277 11 H -0.285 1.285 12 N -0.519 5.519 13 C 0.040 3.960 14 C -0.129 4.129 15 C 0.059 3.941 16 H 0.050 0.950 17 N -0.507 5.507 18 C 0.035 3.965 19 C -0.123 4.123 20 C -0.131 4.131 21 C 0.037 3.963 22 C 0.079 3.921 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.019 0.981 26 H 0.268 0.732 27 H 0.063 0.937 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.040 0.960 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.373 1.811 -15.001 16.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.078 3.922 3 H 0.009 0.991 4 C -0.632 4.632 5 H 0.080 0.920 6 C -0.172 4.172 7 N -0.537 5.537 8 Si 0.868 3.132 9 H -0.211 1.211 10 H -0.203 1.203 11 H -0.212 1.212 12 N -0.244 5.244 13 C -0.089 4.089 14 C -0.168 4.168 15 C -0.050 4.050 16 H 0.068 0.932 17 N -0.232 5.232 18 C -0.093 4.093 19 C -0.162 4.162 20 C -0.169 4.169 21 C -0.091 4.091 22 C -0.049 4.049 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.038 0.962 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.104 0.896 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.059 0.941 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.798 3.001 -13.591 15.490 hybrid contribution 0.557 -1.232 -1.573 2.074 sum 7.355 1.769 -15.164 16.946 Atomic orbital electron populations 1.22149 0.98193 1.00448 0.98952 1.19750 0.91886 0.91909 0.88685 0.99142 1.21926 1.40468 1.10230 0.90528 0.91973 1.25642 0.94054 1.05369 0.92132 1.70856 1.44021 1.07296 1.31515 0.84106 0.77103 0.76034 0.75977 1.21106 1.20320 1.21155 1.63583 1.11013 1.47671 1.02093 1.22790 0.95950 0.97116 0.92994 1.22770 0.95681 0.99245 0.99099 1.23096 0.87231 0.96129 0.98561 0.93188 1.64773 1.02135 1.43274 1.13022 1.23223 0.91683 0.93766 1.00619 1.22482 0.96911 1.01373 0.95393 1.22396 0.96077 1.01044 0.97357 1.22818 0.94845 1.01259 0.90170 1.22647 0.88364 1.01568 0.92340 0.93017 0.92845 0.96175 0.92208 0.91851 0.93108 0.92048 0.90901 0.89565 0.93841 0.91286 0.90758 0.91824 0.91240 0.94115 0.90672 0.92325 0.91546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.79 37.16 0.33 -2.88 16 2 C 0.19 4.56 1.23 -68.86 -0.08 4.48 16 3 H -0.01 -0.22 6.66 -51.93 -0.35 -0.57 16 4 C -0.59 -16.82 8.05 -34.44 -0.28 -17.10 16 5 H 0.06 1.91 7.30 -52.49 -0.38 1.52 16 6 C 0.03 0.98 5.25 -17.82 -0.09 0.88 16 7 N -0.90 -27.85 13.70 55.43 0.76 -27.09 16 8 Si 1.04 25.61 26.38 -169.99 -4.48 21.13 16 9 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 10 H -0.28 -6.35 5.95 56.52 0.34 -6.01 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 N -0.52 -11.32 5.02 -224.68 -1.13 -12.45 16 13 C 0.04 0.72 6.25 -2.83 -0.02 0.71 16 14 C -0.13 -2.01 6.04 -24.91 -0.15 -2.16 16 15 C 0.06 0.97 2.36 -65.58 -0.15 0.81 16 16 H 0.05 0.82 8.06 -51.93 -0.42 0.40 16 17 N -0.51 -7.53 5.15 -219.95 -1.13 -8.66 16 18 C 0.03 0.47 5.95 -1.90 -0.01 0.46 16 19 C -0.12 -1.34 7.06 -24.87 -0.18 -1.51 16 20 C -0.13 -1.31 6.93 -25.37 -0.18 -1.49 16 21 C 0.04 0.45 6.15 -2.75 -0.02 0.43 16 22 C 0.08 1.62 4.50 -2.30 -0.01 1.61 16 23 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 24 H 0.05 1.26 5.21 -51.93 -0.27 0.99 16 25 H 0.02 0.39 7.03 -51.93 -0.37 0.03 16 26 H 0.27 8.26 8.72 -40.82 -0.36 7.90 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.05 0.92 6.71 -51.93 -0.35 0.57 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.09 1.27 8.09 -51.93 -0.42 0.85 16 32 H 0.04 0.58 8.02 -51.93 -0.42 0.17 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.04 0.48 7.72 -51.93 -0.40 0.08 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 1.34 7.66 -51.93 -0.40 0.94 16 40 H 0.07 1.43 7.80 -51.93 -0.41 1.02 16 LS Contribution 301.24 15.07 4.54 4.54 Total: -1.00 -30.00 301.24 -9.48 -39.49 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -7.19 Total: -1.19 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: -0.84 Total: -15.76 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: -1.50 Total: -48.20 kcal Atomic # 14 Polarization: 25.61 SS G_CDS: -4.48 Total: 21.13 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -30.00 -9.48 -39.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217368858.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.675 kcal (2) G-P(sol) polarization free energy of solvation -30.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds