Wall clock time and date at job start Mon Mar 30 2020 03:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47387 * 2 1 4 4 C 1.50701 * 109.47100 * 120.00381 * 2 1 3 5 5 H 1.07992 * 120.00489 * 114.12271 * 4 2 1 6 6 C 1.37883 * 119.99610 * 294.11827 * 4 2 1 7 7 N 1.31513 * 119.99746 * 159.45379 * 6 4 2 8 8 Si 1.86798 * 120.00204 * 339.46195 * 6 4 2 9 9 H 1.48499 * 109.47003 * 179.97438 * 8 6 4 10 10 H 1.48499 * 109.47119 * 59.99492 * 8 6 4 11 11 H 1.48505 * 109.47124 * 299.99521 * 8 6 4 12 12 N 1.46902 * 109.47045 * 239.99949 * 2 1 3 13 13 C 1.47447 * 110.99840 * 66.19011 * 12 2 1 14 14 C 1.54317 * 107.23117 * 123.26178 * 13 12 2 15 15 C 1.55147 * 103.02045 * 22.28122 * 14 13 12 16 16 H 1.08997 * 110.98850 * 82.43925 * 15 14 13 17 17 N 1.46895 * 110.98902 * 206.22130 * 15 14 13 18 18 C 1.48539 * 111.00112 * 176.15270 * 17 15 14 19 19 C 1.54926 * 103.23099 * 159.71867 * 18 17 15 20 20 C 1.54599 * 102.92508 * 322.58483 * 19 18 17 21 21 C 1.47903 * 111.00011 * 293.54425 * 17 15 14 22 22 C 1.47838 * 111.00325 * 187.03586 * 12 2 1 23 23 H 1.08994 * 109.47513 * 174.67798 * 1 2 3 24 24 H 1.08999 * 109.47250 * 294.67861 * 1 2 3 25 25 H 1.09001 * 109.47080 * 54.67741 * 1 2 3 26 26 H 0.97000 * 120.00191 * 358.67892 * 7 6 4 27 27 H 1.09007 * 109.88760 * 242.66438 * 13 12 2 28 28 H 1.09003 * 109.88919 * 3.69178 * 13 12 2 29 29 H 1.08998 * 110.70889 * 140.66990 * 14 13 12 30 30 H 1.09006 * 110.70544 * 263.90187 * 14 13 12 31 31 H 1.08997 * 110.66340 * 278.16004 * 18 17 15 32 32 H 1.09004 * 110.66288 * 41.28101 * 18 17 15 33 33 H 1.09004 * 110.72341 * 204.22772 * 19 18 17 34 34 H 1.09003 * 110.72651 * 80.94534 * 19 18 17 35 35 H 1.08997 * 110.31156 * 263.04689 * 20 19 18 36 36 H 1.08996 * 110.31020 * 140.87103 * 20 19 18 37 37 H 1.09002 * 109.91889 * 333.50974 * 21 17 15 38 38 H 1.09001 * 109.91708 * 94.61109 * 21 17 15 39 39 H 1.09002 * 110.37382 * 332.46605 * 22 12 2 40 40 H 1.09001 * 110.37903 * 94.80428 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.5727 -1.6405 1.1342 6 6 1.8020 -0.1730 2.4791 7 7 1.8615 -0.9395 3.5461 8 14 1.4053 1.6439 2.6552 9 1 1.2013 1.9692 4.0897 10 1 0.1677 1.9561 1.8964 11 1 2.5312 2.4506 2.1196 12 7 2.0196 -0.6925 -1.1994 13 6 1.6718 0.0564 -2.4210 14 6 2.9888 0.3416 -3.1729 15 6 3.9462 -0.7507 -2.6277 16 1 3.8010 -1.6947 -3.1529 17 7 5.3461 -0.3139 -2.7134 18 6 6.2557 -1.3198 -2.1076 19 6 7.6301 -0.9793 -2.7363 20 6 7.2595 -0.5828 -4.1839 21 6 5.7743 -0.1803 -4.1228 22 6 3.4877 -0.8604 -1.1522 23 1 -0.3634 -1.0231 -0.0953 24 1 -0.3634 0.4291 0.9338 25 1 -0.3633 0.5942 -0.8385 26 1 2.0485 -1.8867 3.4530 27 1 1.0096 -0.5419 -3.0468 28 1 1.1834 0.9939 -2.1548 29 1 2.8504 0.2310 -4.2484 30 1 3.3626 1.3369 -2.9318 31 1 6.2891 -1.2051 -1.0242 32 1 5.9480 -2.3296 -2.3792 33 1 8.2837 -1.8517 -2.7306 34 1 8.0964 -0.1433 -2.2148 35 1 7.3942 -1.4312 -4.8548 36 1 7.8668 0.2605 -4.5124 37 1 5.1836 -0.8435 -4.7548 38 1 5.6525 0.8518 -4.4517 39 1 3.9410 -0.0699 -0.5541 40 1 3.7449 -1.8389 -0.7467 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217368858.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:50 Heat of formation + Delta-G solvation = -13.601039 kcal Electronic energy + Delta-G solvation = -17909.599375 eV Core-core repulsion = 15336.932905 eV Total energy + Delta-G solvation = -2572.666470 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 238.174 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.71159 -38.87763 -35.67438 -33.75616 -31.74357 -30.52089 -29.42432 -28.07630 -26.56601 -23.37799 -22.77371 -21.71360 -21.18154 -20.52580 -19.59359 -17.47715 -17.28601 -16.58980 -15.96057 -15.27100 -15.07087 -14.91245 -14.78367 -14.45047 -13.97002 -13.76299 -13.62720 -13.40511 -13.19038 -12.77425 -12.39950 -12.28094 -12.21767 -12.08522 -12.00288 -11.93690 -11.71041 -11.60897 -11.58537 -11.41278 -10.97447 -10.42852 -9.42696 -9.04699 -8.76514 -6.32777 1.42759 1.49607 1.69233 2.46828 2.81615 3.03590 3.44566 3.52454 3.73819 3.78685 3.96493 4.09822 4.16623 4.32257 4.34533 4.53566 4.59398 4.60804 4.70432 4.76336 4.78688 4.81297 4.85219 4.91735 4.96406 5.00980 5.02691 5.05307 5.11635 5.18259 5.26382 5.31519 5.51078 5.83953 5.92130 6.04046 6.08610 6.21868 6.53583 6.72576 7.42424 8.62412 Molecular weight = 238.17amu Principal moments of inertia in cm(-1) A = 0.029792 B = 0.006757 C = 0.006085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.619692 B = 4142.948564 C = 4600.189031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.187 3.813 3 H -0.012 1.012 4 C -0.593 4.593 5 H 0.020 0.980 6 C -0.016 4.016 7 N -0.934 5.934 8 Si 1.079 2.921 9 H -0.286 1.286 10 H -0.243 1.243 11 H -0.273 1.273 12 N -0.537 5.537 13 C 0.037 3.963 14 C -0.117 4.117 15 C 0.073 3.927 16 H 0.054 0.946 17 N -0.524 5.524 18 C 0.029 3.971 19 C -0.118 4.118 20 C -0.124 4.124 21 C 0.035 3.965 22 C 0.085 3.915 23 H 0.041 0.959 24 H 0.045 0.955 25 H 0.055 0.945 26 H 0.252 0.748 27 H 0.082 0.918 28 H 0.054 0.946 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.042 0.958 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.048 0.952 38 H 0.083 0.917 39 H 0.026 0.974 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.318 3.517 -17.958 19.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.079 3.921 3 H 0.006 0.994 4 C -0.631 4.631 5 H 0.038 0.962 6 C -0.215 4.215 7 N -0.569 5.569 8 Si 0.900 3.100 9 H -0.211 1.211 10 H -0.168 1.168 11 H -0.198 1.198 12 N -0.262 5.262 13 C -0.091 4.091 14 C -0.155 4.155 15 C -0.036 4.036 16 H 0.072 0.928 17 N -0.249 5.249 18 C -0.099 4.099 19 C -0.156 4.156 20 C -0.162 4.162 21 C -0.092 4.092 22 C -0.044 4.044 23 H 0.060 0.940 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.060 0.940 27 H 0.100 0.900 28 H 0.073 0.927 29 H 0.114 0.886 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.066 0.934 38 H 0.101 0.899 39 H 0.045 0.955 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 6.746 4.694 -16.588 18.512 hybrid contribution 0.633 -1.872 -0.672 2.088 sum 7.379 2.821 -17.260 18.982 Atomic orbital electron populations 1.22022 0.96485 1.00545 1.00052 1.19613 0.93058 0.91156 0.88283 0.99421 1.22079 1.39516 1.08753 0.92798 0.96191 1.27058 0.93584 1.09017 0.91863 1.70984 1.46793 1.06606 1.32548 0.83618 0.78787 0.71063 0.76510 1.21140 1.16758 1.19850 1.63467 1.11527 1.48472 1.02698 1.22922 0.97592 0.97132 0.91502 1.22709 0.93681 0.98422 1.00710 1.22884 0.88756 0.96961 0.95049 0.92802 1.64739 1.01245 1.43517 1.15383 1.23232 0.93570 0.93618 0.99432 1.22467 0.95213 1.02055 0.95839 1.22399 0.94800 1.02278 0.96719 1.22921 0.96230 1.01972 0.88115 1.22455 0.88012 0.98788 0.95124 0.93971 0.93632 0.92574 0.93958 0.89992 0.92718 0.88608 0.91226 0.92139 0.93982 0.89525 0.91036 0.90242 0.89683 0.93409 0.89911 0.95515 0.94322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.89 8.79 71.98 0.63 -5.25 16 2 C 0.19 9.18 1.23 44.17 0.05 9.24 16 3 H -0.01 -0.57 6.66 -2.39 -0.02 -0.59 16 4 C -0.59 -34.91 8.05 25.60 0.21 -34.70 16 5 H 0.02 1.30 7.30 -2.91 -0.02 1.28 16 6 C -0.02 -0.98 5.25 84.66 0.44 -0.53 16 7 N -0.93 -59.78 13.70 21.45 0.29 -59.49 16 8 Si 1.08 51.32 26.38 68.60 1.81 53.13 16 9 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 10 H -0.24 -10.24 5.95 99.48 0.59 -9.65 16 11 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 12 N -0.54 -23.32 5.02 -864.75 -4.34 -27.67 16 13 C 0.04 1.22 6.25 86.64 0.54 1.76 16 14 C -0.12 -3.29 6.04 31.78 0.19 -3.10 16 15 C 0.07 2.32 2.36 46.30 0.11 2.43 16 16 H 0.05 1.68 8.06 -2.39 -0.02 1.66 16 17 N -0.52 -14.96 5.15 -849.80 -4.37 -19.34 16 18 C 0.03 0.80 5.95 86.64 0.52 1.31 16 19 C -0.12 -2.34 7.06 31.80 0.22 -2.12 16 20 C -0.12 -2.09 6.93 31.48 0.22 -1.87 16 21 C 0.04 0.74 6.15 86.45 0.53 1.27 16 22 C 0.08 3.58 4.50 86.77 0.39 3.97 16 23 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.04 2.06 5.21 -2.39 -0.01 2.05 16 25 H 0.06 2.06 7.03 -2.39 -0.02 2.04 16 26 H 0.25 16.42 8.72 -92.71 -0.81 15.61 16 27 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 28 H 0.05 1.79 6.71 -2.39 -0.02 1.77 16 29 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 31 H 0.06 1.91 8.09 -2.39 -0.02 1.89 16 32 H 0.04 1.14 8.02 -2.38 -0.02 1.12 16 33 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.05 0.95 7.72 -2.39 -0.02 0.93 16 38 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.03 1.27 7.66 -2.39 -0.02 1.26 16 40 H 0.04 1.79 7.80 -2.39 -0.02 1.77 16 Total: -1.00 -67.47 301.24 -1.73 -69.19 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 0.83 Total: 11.77 kcal Atomic # 6 Polarization: -31.66 SS G_CDS: 4.06 Total: -27.60 kcal Atomic # 7 Polarization: -98.07 SS G_CDS: -8.42 Total: -106.49 kcal Atomic # 14 Polarization: 51.32 SS G_CDS: 1.81 Total: 53.13 kcal Total: -67.47 -1.73 -69.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217368858.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.592 kcal (2) G-P(sol) polarization free energy of solvation -67.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds