Wall clock time and date at job start Mon Mar 30 2020 04:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31022 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48506 * 109.47002 * 264.58933 * 3 2 1 5 5 H 1.48502 * 109.47074 * 24.58942 * 3 2 1 6 6 H 1.48495 * 109.47157 * 144.58913 * 3 2 1 7 7 C 1.39724 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99525 * 347.18531 * 7 2 1 9 9 C 1.41151 * 120.00142 * 167.18418 * 7 2 1 10 10 C 1.37701 * 122.86020 * 173.57410 * 9 7 2 11 11 S 1.70991 * 108.83765 * 179.76719 * 10 9 7 12 12 C 1.75896 * 90.80967 * 0.34204 * 11 10 9 13 13 C 1.50705 * 124.99296 * 179.91469 * 12 11 10 14 14 C 1.53003 * 109.46960 * 269.69564 * 13 12 11 15 15 H 1.09001 * 110.27250 * 52.90965 * 14 13 12 16 16 C 1.54945 * 110.30727 * 174.99833 * 14 13 12 17 17 C 1.55310 * 100.97966 * 155.34184 * 16 14 13 18 18 C 1.54443 * 102.22350 * 325.91808 * 17 16 14 19 19 O 1.43233 * 107.60710 * 21.30205 * 18 17 16 20 20 N 1.28790 * 110.01463 * 359.65058 * 12 11 10 21 21 H 0.97001 * 119.99604 * 359.97438 * 1 2 3 22 22 H 1.08002 * 125.58027 * 0.07908 * 10 9 7 23 23 H 1.08991 * 109.47217 * 149.70025 * 13 12 11 24 24 H 1.09005 * 109.46828 * 29.69349 * 13 12 11 25 25 H 1.08995 * 111.12419 * 273.27799 * 16 14 13 26 26 H 1.08999 * 111.12540 * 37.40345 * 16 14 13 27 27 H 1.09001 * 110.85083 * 84.07496 * 17 16 14 28 28 H 1.09000 * 110.84641 * 207.70169 * 17 16 14 29 29 H 1.09002 * 109.79325 * 261.79353 * 18 17 16 30 30 H 1.09003 * 109.84862 * 140.83664 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 2.6061 1.9803 -1.3939 5 1 1.3892 2.6829 0.5826 6 1 3.4799 1.4758 0.8112 7 6 2.0089 -1.2100 -0.0005 8 1 1.4890 -2.1338 0.2065 9 6 3.3940 -1.2251 -0.2717 10 6 4.1645 -2.3612 -0.1620 11 16 5.7778 -1.9763 -0.5777 12 6 5.3297 -0.3003 -0.8676 13 6 6.2793 0.7849 -1.3055 14 6 6.8735 1.4704 -0.0735 15 1 7.3070 0.7297 0.5986 16 6 7.9465 2.5042 -0.4984 17 6 7.9223 3.4719 0.7162 18 6 6.4347 3.4399 1.1301 19 8 5.8652 2.2343 0.6070 20 7 4.0697 -0.1380 -0.6559 21 1 -0.4849 0.8401 0.0004 22 1 3.8071 -3.3367 0.1330 23 1 5.7409 1.5186 -1.9052 24 1 7.0813 0.3475 -1.9003 25 1 8.9239 2.0341 -0.6066 26 1 7.6563 3.0173 -1.4152 27 1 8.5567 3.1003 1.5210 28 1 8.2211 4.4767 0.4176 29 1 5.9172 4.3043 0.7140 30 1 6.3528 3.4463 2.2170 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061798164.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:13 Heat of formation + Delta-G solvation = -26.119677 kcal Electronic energy + Delta-G solvation = -15051.835211 eV Core-core repulsion = 12551.993911 eV Total energy + Delta-G solvation = -2499.841299 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.36417 -38.06687 -33.48339 -32.45682 -31.87504 -29.12236 -26.35774 -25.93483 -22.23271 -21.48653 -20.65227 -18.88359 -17.94746 -16.64703 -15.81713 -15.37123 -15.07124 -14.63072 -13.99139 -13.34153 -13.24425 -12.64343 -12.60752 -12.43768 -11.86541 -11.67136 -11.46035 -11.19150 -10.99914 -10.86043 -10.79853 -10.31588 -10.23626 -9.80376 -9.31792 -9.10951 -8.26777 -7.94038 -7.51836 -6.74459 -4.38603 2.04931 2.61803 3.47997 3.48135 3.56491 3.80304 3.95958 4.12443 4.47623 4.51937 4.70157 4.87149 5.08379 5.25346 5.26117 5.43228 5.56091 5.65256 5.67176 5.73260 5.83575 5.88821 6.04038 6.28593 6.64021 7.03022 7.10525 7.29045 7.52627 8.27306 8.56312 8.67235 9.26310 10.22878 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.023309 B = 0.010867 C = 0.007840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.962587 B = 2575.930898 C = 3570.456589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.817 5.817 2 C 0.081 3.919 3 Si 0.966 3.034 4 H -0.279 1.279 5 H -0.326 1.326 6 H -0.232 1.232 7 C -0.414 4.414 8 H 0.093 0.907 9 C 0.206 3.794 10 C -0.449 4.449 11 S -0.004 6.004 12 C 0.079 3.921 13 C -0.039 4.039 14 C 0.086 3.914 15 H 0.074 0.926 16 C -0.151 4.151 17 C -0.154 4.154 18 C 0.045 3.955 19 O -0.356 6.356 20 N -0.464 5.464 21 H 0.284 0.716 22 H 0.142 0.858 23 H 0.092 0.908 24 H 0.093 0.907 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.065 0.935 30 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.371 7.107 -0.626 16.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.139 4.139 3 Si 0.798 3.202 4 H -0.205 1.205 5 H -0.258 1.258 6 H -0.157 1.157 7 C -0.448 4.448 8 H 0.111 0.889 9 C 0.086 3.914 10 C -0.588 4.588 11 S 0.244 5.756 12 C -0.203 4.203 13 C -0.081 4.081 14 C 0.027 3.973 15 H 0.091 0.909 16 C -0.189 4.189 17 C -0.192 4.192 18 C -0.032 4.032 19 O -0.275 6.275 20 N -0.182 5.182 21 H 0.094 0.906 22 H 0.160 0.840 23 H 0.110 0.890 24 H 0.111 0.889 25 H 0.102 0.898 26 H 0.099 0.901 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 15.490 6.998 -0.717 17.012 hybrid contribution -0.699 0.562 0.234 0.927 sum 14.791 7.560 -0.482 16.618 Atomic orbital electron populations 1.69758 1.08362 1.30418 1.35598 1.26283 0.94939 1.03065 0.89611 0.85200 0.78513 0.76013 0.80482 1.20518 1.25768 1.15672 1.18797 0.89139 0.95873 1.40946 0.88916 1.18077 0.94720 0.84910 0.93724 1.24872 0.94065 1.03914 1.35921 1.82556 1.14175 1.08018 1.70860 1.27107 0.93998 0.95429 1.03766 1.20345 0.96501 0.94627 0.96611 1.22993 0.87683 0.93441 0.93145 0.90861 1.23326 0.99760 0.96967 0.98828 1.23115 0.97267 1.00525 0.98289 1.23132 0.92536 0.88834 0.98716 1.88759 1.33131 1.32467 1.73192 1.66073 1.05739 1.30547 1.15828 0.90632 0.84019 0.88979 0.88877 0.89836 0.90105 0.90661 0.90261 0.91649 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.63 13.94 55.54 0.77 -22.86 16 2 C 0.08 2.34 5.51 -17.34 -0.10 2.24 16 3 Si 0.97 25.18 25.57 -169.99 -4.35 20.83 16 4 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 5 H -0.33 -8.27 7.11 56.52 0.40 -7.87 16 6 H -0.23 -6.18 5.70 56.52 0.32 -5.86 16 7 C -0.41 -12.29 9.77 -37.92 -0.37 -12.66 16 8 H 0.09 2.83 8.06 -52.48 -0.42 2.41 16 9 C 0.21 5.73 6.21 -86.17 -0.54 5.19 16 10 C -0.45 -11.40 10.98 30.54 0.34 -11.07 16 11 S 0.00 -0.09 23.16 -107.50 -2.49 -2.58 16 12 C 0.08 1.71 6.71 -13.55 -0.09 1.62 16 13 C -0.04 -0.64 5.55 -27.88 -0.15 -0.80 16 14 C 0.09 1.29 3.39 -25.70 -0.09 1.21 16 15 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 16 C -0.15 -1.58 6.57 -24.48 -0.16 -1.74 16 17 C -0.15 -1.53 7.03 -24.75 -0.17 -1.70 16 18 C 0.04 0.60 7.80 37.91 0.30 0.90 16 19 O -0.36 -6.53 10.05 -35.23 -0.35 -6.88 16 20 N -0.46 -12.04 5.52 -8.36 -0.05 -12.09 16 21 H 0.28 7.52 8.30 -40.82 -0.34 7.18 16 22 H 0.14 3.49 8.06 -52.49 -0.42 3.07 16 23 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 24 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 25 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.08 0.80 8.06 -51.93 -0.42 0.38 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 265.27 15.07 4.00 4.00 Total: -1.00 -32.58 265.27 -7.36 -39.95 By element: Atomic # 1 Polarization: 0.30 SS G_CDS: -3.86 Total: -3.56 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: -1.04 Total: -16.81 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.73 Total: -34.94 kcal Atomic # 8 Polarization: -6.53 SS G_CDS: -0.35 Total: -6.88 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -4.35 Total: 20.83 kcal Atomic # 16 Polarization: -0.09 SS G_CDS: -2.49 Total: -2.58 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.58 -7.36 -39.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061798164.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.826 kcal (2) G-P(sol) polarization free energy of solvation -32.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds