Wall clock time and date at job start Mon Mar 30 2020 04:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31022 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48506 * 109.47002 * 264.58933 * 3 2 1 5 5 H 1.48502 * 109.47074 * 24.58942 * 3 2 1 6 6 H 1.48495 * 109.47157 * 144.58913 * 3 2 1 7 7 C 1.39724 * 120.00116 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99525 * 347.18531 * 7 2 1 9 9 C 1.41151 * 120.00142 * 167.18418 * 7 2 1 10 10 C 1.37701 * 122.86020 * 173.57410 * 9 7 2 11 11 S 1.70991 * 108.83765 * 179.76719 * 10 9 7 12 12 C 1.75896 * 90.80967 * 0.34204 * 11 10 9 13 13 C 1.50705 * 124.99296 * 179.91469 * 12 11 10 14 14 C 1.53003 * 109.46960 * 269.69564 * 13 12 11 15 15 H 1.09001 * 110.27250 * 52.90965 * 14 13 12 16 16 C 1.54945 * 110.30727 * 174.99833 * 14 13 12 17 17 C 1.55310 * 100.97966 * 155.34184 * 16 14 13 18 18 C 1.54443 * 102.22350 * 325.91808 * 17 16 14 19 19 O 1.43233 * 107.60710 * 21.30205 * 18 17 16 20 20 N 1.28790 * 110.01463 * 359.65058 * 12 11 10 21 21 H 0.97001 * 119.99604 * 359.97438 * 1 2 3 22 22 H 1.08002 * 125.58027 * 0.07908 * 10 9 7 23 23 H 1.08991 * 109.47217 * 149.70025 * 13 12 11 24 24 H 1.09005 * 109.46828 * 29.69349 * 13 12 11 25 25 H 1.08995 * 111.12419 * 273.27799 * 16 14 13 26 26 H 1.08999 * 111.12540 * 37.40345 * 16 14 13 27 27 H 1.09001 * 110.85083 * 84.07496 * 17 16 14 28 28 H 1.09000 * 110.84641 * 207.70169 * 17 16 14 29 29 H 1.09002 * 109.79325 * 261.79353 * 18 17 16 30 30 H 1.09003 * 109.84862 * 140.83664 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 2.6061 1.9803 -1.3939 5 1 1.3892 2.6829 0.5826 6 1 3.4799 1.4758 0.8112 7 6 2.0089 -1.2100 -0.0005 8 1 1.4890 -2.1338 0.2065 9 6 3.3940 -1.2251 -0.2717 10 6 4.1645 -2.3612 -0.1620 11 16 5.7778 -1.9763 -0.5777 12 6 5.3297 -0.3003 -0.8676 13 6 6.2793 0.7849 -1.3055 14 6 6.8735 1.4704 -0.0735 15 1 7.3070 0.7297 0.5986 16 6 7.9465 2.5042 -0.4984 17 6 7.9223 3.4719 0.7162 18 6 6.4347 3.4399 1.1301 19 8 5.8652 2.2343 0.6070 20 7 4.0697 -0.1380 -0.6559 21 1 -0.4849 0.8401 0.0004 22 1 3.8071 -3.3367 0.1330 23 1 5.7409 1.5186 -1.9052 24 1 7.0813 0.3475 -1.9003 25 1 8.9239 2.0341 -0.6066 26 1 7.6563 3.0173 -1.4152 27 1 8.5567 3.1003 1.5210 28 1 8.2211 4.4767 0.4176 29 1 5.9172 4.3043 0.7140 30 1 6.3528 3.4463 2.2170 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061798164.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:12 Heat of formation + Delta-G solvation = -48.229659 kcal Electronic energy + Delta-G solvation = -15052.793972 eV Core-core repulsion = 12551.993911 eV Total energy + Delta-G solvation = -2500.800060 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.57100 -39.84339 -35.47084 -33.95085 -32.88849 -30.83324 -28.10882 -27.55893 -23.68589 -22.40552 -22.04516 -20.79385 -19.91466 -17.73069 -17.25846 -17.13323 -16.84672 -15.78309 -15.61179 -15.02245 -14.69535 -14.29043 -14.10241 -13.90049 -13.56607 -12.96872 -12.85343 -12.76151 -12.50374 -12.34313 -12.04831 -11.95368 -11.68358 -11.61957 -11.25888 -10.44726 -10.11455 -9.83170 -9.46401 -8.90491 -6.55855 0.19653 0.84971 1.38947 1.45717 1.54594 1.71146 2.07720 2.44355 2.96440 3.21686 3.39031 3.63870 3.94963 4.05835 4.24213 4.33928 4.44452 4.57860 4.73681 4.87939 4.88660 4.95400 5.01932 5.04919 5.08971 5.10872 5.33327 5.43665 5.99251 6.25047 6.44506 6.57214 7.28699 8.12516 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.023309 B = 0.010867 C = 0.007840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.962587 B = 2575.930898 C = 3570.456589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.048 3.952 3 Si 1.027 2.973 4 H -0.284 1.284 5 H -0.320 1.320 6 H -0.242 1.242 7 C -0.455 4.455 8 H 0.062 0.938 9 C 0.189 3.811 10 C -0.467 4.467 11 S 0.089 5.911 12 C 0.082 3.918 13 C -0.043 4.043 14 C 0.077 3.923 15 H 0.071 0.929 16 C -0.138 4.138 17 C -0.143 4.143 18 C 0.031 3.969 19 O -0.405 6.405 20 N -0.505 5.505 21 H 0.292 0.708 22 H 0.140 0.860 23 H 0.089 0.911 24 H 0.138 0.862 25 H 0.114 0.886 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.103 0.897 29 H 0.067 0.933 30 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.268 8.257 -1.357 21.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.168 4.168 3 Si 0.858 3.142 4 H -0.211 1.211 5 H -0.252 1.252 6 H -0.167 1.167 7 C -0.490 4.490 8 H 0.080 0.920 9 C 0.067 3.933 10 C -0.605 4.605 11 S 0.339 5.661 12 C -0.198 4.198 13 C -0.084 4.084 14 C 0.018 3.982 15 H 0.089 0.911 16 C -0.175 4.175 17 C -0.181 4.181 18 C -0.045 4.045 19 O -0.326 6.326 20 N -0.225 5.225 21 H 0.102 0.898 22 H 0.158 0.842 23 H 0.107 0.893 24 H 0.156 0.844 25 H 0.132 0.868 26 H 0.107 0.893 27 H 0.105 0.895 28 H 0.121 0.879 29 H 0.085 0.915 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 19.418 8.124 -1.448 21.098 hybrid contribution -1.699 0.050 0.453 1.759 sum 17.718 8.174 -0.994 19.538 Atomic orbital electron populations 1.69771 1.09073 1.31420 1.37616 1.26872 0.95509 1.05062 0.89341 0.84271 0.76965 0.73268 0.79716 1.21096 1.25183 1.16681 1.18796 0.90764 0.95217 1.44178 0.91987 1.18162 0.94536 0.86505 0.94075 1.25325 0.97613 1.03513 1.34094 1.82090 1.09232 1.06183 1.68596 1.28200 0.93628 0.97413 1.00601 1.20733 0.96496 0.93274 0.97897 1.23165 0.88301 0.94432 0.92251 0.91088 1.23311 0.99440 0.95658 0.99137 1.23105 0.94624 1.01935 0.98423 1.23360 0.95120 0.87398 0.98627 1.88707 1.35667 1.34284 1.73916 1.66014 1.07635 1.30132 1.18677 0.89791 0.84213 0.89282 0.84415 0.86807 0.89269 0.89525 0.87857 0.91515 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -51.28 13.94 21.80 0.30 -50.98 16 2 C 0.05 2.87 5.51 85.17 0.47 3.34 16 3 Si 1.03 53.75 25.57 68.60 1.75 55.51 16 4 H -0.28 -14.85 7.11 99.48 0.71 -14.15 16 5 H -0.32 -16.02 7.11 99.48 0.71 -15.31 16 6 H -0.24 -12.92 5.70 99.48 0.57 -12.36 16 7 C -0.46 -28.33 9.77 23.34 0.23 -28.11 16 8 H 0.06 4.06 8.06 -2.91 -0.02 4.04 16 9 C 0.19 10.68 6.21 39.45 0.25 10.92 16 10 C -0.47 -23.54 10.98 67.69 0.74 -22.80 16 11 S 0.09 3.43 23.16 -56.49 -1.31 2.12 16 12 C 0.08 3.37 6.71 88.56 0.59 3.97 16 13 C -0.04 -1.24 5.55 29.85 0.17 -1.08 16 14 C 0.08 2.05 3.39 31.26 0.11 2.15 16 15 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 16 C -0.14 -2.20 6.57 32.05 0.21 -1.99 16 17 C -0.14 -2.24 7.03 31.88 0.22 -2.01 16 18 C 0.03 0.77 7.80 72.47 0.56 1.34 16 19 O -0.41 -14.17 10.05 -148.98 -1.50 -15.67 16 20 N -0.51 -26.01 5.52 -180.35 -0.99 -27.00 16 21 H 0.29 15.98 8.30 -92.71 -0.77 15.21 16 22 H 0.14 6.95 8.06 -2.91 -0.02 6.92 16 23 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 24 H 0.14 2.71 8.14 -2.38 -0.02 2.69 16 25 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.09 1.31 8.06 -2.39 -0.02 1.29 16 27 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -73.75 265.27 2.80 -70.95 By element: Atomic # 1 Polarization: -1.65 SS G_CDS: 0.99 Total: -0.66 kcal Atomic # 6 Polarization: -37.82 SS G_CDS: 3.55 Total: -34.27 kcal Atomic # 7 Polarization: -77.29 SS G_CDS: -0.69 Total: -77.98 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -1.50 Total: -15.67 kcal Atomic # 14 Polarization: 53.75 SS G_CDS: 1.75 Total: 55.51 kcal Atomic # 16 Polarization: 3.43 SS G_CDS: -1.31 Total: 2.12 kcal Total: -73.75 2.80 -70.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061798164.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.718 kcal (2) G-P(sol) polarization free energy of solvation -73.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds