Wall clock time and date at job start Mon Mar 30 2020 03:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30606 * 1 3 3 Si 1.86795 * 119.99920 * 2 1 4 4 H 1.48498 * 109.47109 * 269.99890 * 3 2 1 5 5 H 1.48500 * 109.47338 * 30.00120 * 3 2 1 6 6 H 1.48497 * 109.46994 * 150.00133 * 3 2 1 7 7 C 1.40325 * 119.99676 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99450 * 179.97438 * 7 2 1 9 9 C 1.40129 * 120.00428 * 359.97438 * 7 2 1 10 10 N 1.32495 * 125.30345 * 0.04320 * 9 7 2 11 11 C 1.33941 * 109.81806 * 179.97438 * 10 9 7 12 12 C 1.40641 * 133.13458 * 180.02562 * 11 10 9 13 13 C 1.36294 * 119.91595 * 179.97438 * 12 11 10 14 14 C 1.39298 * 120.73993 * 0.02562 * 13 12 11 15 15 F 1.35105 * 119.75057 * 179.97438 * 14 13 12 16 16 C 1.38395 * 120.49509 * 0.02562 * 14 13 12 17 17 F 1.35100 * 120.14677 * 179.97438 * 16 14 13 18 18 C 1.38779 * 119.71381 * 359.70948 * 16 14 13 19 19 N 1.37869 * 125.31044 * 179.97438 * 9 7 2 20 20 N 1.36607 * 126.55181 * 0.02562 * 19 9 7 21 21 H 0.96995 * 120.00176 * 359.97438 * 1 2 3 22 22 H 1.07992 * 120.04139 * 359.97438 * 12 11 10 23 23 H 1.07995 * 119.62846 * 180.02562 * 13 12 11 24 24 H 1.00901 * 110.99866 * 90.02567 * 20 19 9 25 25 H 1.00896 * 110.99345 * 213.97545 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2400 1.6177 0.0000 4 1 2.4875 2.0464 -1.4001 5 1 1.4375 2.6527 0.7001 6 1 3.5376 1.4401 0.7000 7 6 2.0076 -1.2153 0.0005 8 1 3.0876 -1.2152 0.0001 9 6 1.3070 -2.4289 0.0016 10 7 -0.0123 -2.5513 0.0014 11 6 -0.3479 -3.8480 0.0021 12 6 -1.5825 -4.5217 0.0018 13 6 -1.6133 -5.8843 0.0022 14 6 -0.4324 -6.6232 0.0035 15 9 -0.4863 -7.9732 0.0044 16 6 0.7955 -5.9848 0.0049 17 9 1.9364 -6.7084 0.0067 18 6 0.8498 -4.5981 -0.0011 19 7 1.8829 -3.6815 0.0017 20 7 3.2198 -3.9623 0.0013 21 1 -0.4850 0.8400 0.0004 22 1 -2.5049 -3.9601 0.0012 23 1 -2.5639 -6.3968 0.0015 24 1 3.5739 -4.0368 0.9432 25 1 3.4128 -4.8012 -0.5249 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075973533.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:08 Heat of formation + Delta-G solvation = -5.834818 kcal Electronic energy + Delta-G solvation = -16514.727466 eV Core-core repulsion = 13358.385054 eV Total energy + Delta-G solvation = -3156.342412 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 239.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.72113 -47.77247 -40.65360 -36.28481 -34.49160 -33.35680 -29.92061 -28.89870 -27.22748 -26.00606 -22.10467 -21.43907 -20.17466 -17.88765 -17.31325 -17.05979 -16.25178 -16.11608 -15.42882 -15.30890 -14.76721 -14.44547 -14.25481 -13.64761 -13.40157 -13.08574 -12.34297 -11.95504 -11.59859 -11.46469 -11.06902 -10.81526 -10.59370 -10.46428 -9.87544 -9.31176 -8.97642 -8.35983 -7.59773 -7.08304 -6.90822 -4.85054 1.64742 2.14601 2.88626 2.94607 2.99093 3.34310 3.73634 3.76428 4.53188 4.59241 4.95791 5.21551 5.27042 5.49780 5.80321 5.82853 6.22268 6.47481 6.73781 6.81629 6.91621 7.03197 7.25856 7.45455 7.58376 7.82591 8.04748 8.41655 9.03964 9.56642 9.97640 Molecular weight = 239.06amu Principal moments of inertia in cm(-1) A = 0.043843 B = 0.007534 C = 0.006449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.483652 B = 3715.778847 C = 4340.542074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.708 5.708 2 C 0.070 3.930 3 Si 0.928 3.072 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.405 4.405 8 H 0.101 0.899 9 C 0.438 3.562 10 N -0.521 5.521 11 C 0.144 3.856 12 C -0.114 4.114 13 C -0.117 4.117 14 C -0.012 4.012 15 F -0.150 7.150 16 C 0.079 3.921 17 F -0.153 7.153 18 C -0.054 4.054 19 N -0.382 5.382 20 N -0.578 5.578 21 H 0.284 0.716 22 H 0.130 0.870 23 H 0.130 0.870 24 H 0.337 0.663 25 H 0.353 0.647 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.305 -3.008 0.639 3.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.329 5.329 2 C -0.159 4.159 3 Si 0.750 3.250 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.441 4.441 8 H 0.119 0.881 9 C 0.207 3.793 10 N -0.246 5.246 11 C 0.011 3.989 12 C -0.136 4.136 13 C -0.139 4.139 14 C -0.035 4.035 15 F -0.129 7.129 16 C 0.055 3.945 17 F -0.132 7.132 18 C -0.165 4.165 19 N -0.169 5.169 20 N -0.202 5.202 21 H 0.096 0.904 22 H 0.147 0.853 23 H 0.148 0.852 24 H 0.152 0.848 25 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 0.863 -1.533 0.276 1.781 hybrid contribution 1.130 -1.480 0.475 1.921 sum 1.993 -3.013 0.751 3.690 Atomic orbital electron populations 1.69957 1.07398 1.29382 1.26166 1.26039 0.95079 1.01360 0.93429 0.85988 0.80145 0.79250 0.79576 1.19016 1.19776 1.18239 1.18782 0.95079 0.86800 1.43478 0.88125 1.20407 0.86076 0.82441 0.90406 1.71546 1.08323 1.11718 1.33006 1.19374 0.90861 0.91313 0.97379 1.19690 0.95730 0.92133 1.06000 1.20135 0.95711 0.93733 1.04328 1.16782 0.92283 0.76516 1.17925 1.91376 1.97177 1.28924 1.95401 1.16286 0.80877 0.85701 1.11679 1.91355 1.48868 1.78081 1.94885 1.18962 0.93078 0.89276 1.15146 1.44521 0.97869 1.05584 1.68931 1.59661 0.96940 1.44229 1.19341 0.90447 0.85255 0.85235 0.84783 0.83254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.53 11.85 55.57 0.66 -16.87 15 2 C 0.07 1.62 5.50 -17.29 -0.10 1.53 15 3 Si 0.93 17.00 29.56 -169.99 -5.03 11.97 15 4 H -0.27 -4.83 7.11 56.52 0.40 -4.42 15 5 H -0.27 -4.89 7.11 56.52 0.40 -4.48 15 6 H -0.26 -4.64 7.11 56.52 0.40 -4.24 15 7 C -0.40 -9.99 9.24 -38.09 -0.35 -10.34 15 8 H 0.10 2.32 7.85 -52.49 -0.41 1.91 15 9 C 0.44 11.40 7.49 -155.66 -1.17 10.23 15 10 N -0.52 -14.03 9.32 -10.29 -0.10 -14.12 15 11 C 0.14 3.51 7.21 -84.87 -0.61 2.90 15 12 C -0.11 -2.34 10.07 -39.38 -0.40 -2.74 15 13 C -0.12 -2.19 9.94 -39.89 -0.40 -2.58 15 14 C -0.01 -0.25 7.31 -39.13 -0.29 -0.54 15 15 F -0.15 -2.94 17.17 2.25 0.04 -2.90 15 16 C 0.08 1.71 7.32 -39.32 -0.29 1.42 15 17 F -0.15 -3.13 16.36 2.25 0.04 -3.09 15 18 C -0.05 -1.28 6.98 -83.66 -0.58 -1.86 15 19 N -0.38 -8.96 3.85 -9.84 -0.04 -8.99 15 20 N -0.58 -11.07 10.29 60.35 0.62 -10.45 15 21 H 0.28 6.28 8.29 -40.82 -0.34 5.94 15 22 H 0.13 2.40 8.06 -52.49 -0.42 1.98 15 23 H 0.13 1.95 8.06 -52.49 -0.42 1.53 15 24 H 0.34 5.70 9.21 -181.36 -1.67 4.03 15 25 H 0.35 6.15 8.25 -181.36 -1.50 4.65 15 LS Contribution 240.50 15.07 3.62 3.62 Total: -1.00 -28.02 240.50 -7.91 -35.94 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -3.56 Total: 6.90 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -4.18 Total: -1.99 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: 1.15 Total: -50.44 kcal Atomic # 9 Polarization: -6.07 SS G_CDS: 0.08 Total: -6.00 kcal Atomic # 14 Polarization: 17.00 SS G_CDS: -5.03 Total: 11.97 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -28.02 -7.91 -35.94 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075973533.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.102 kcal (2) G-P(sol) polarization free energy of solvation -28.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds