Wall clock time and date at job start Mon Mar 30 2020 04:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50703 * 109.47049 * 2 1 4 4 C 1.38424 * 122.54091 * 265.02099 * 3 2 1 5 5 C 1.33385 * 114.92103 * 179.97438 * 4 3 2 6 6 S 1.75884 * 109.59663 * 359.97438 * 5 4 3 7 7 C 1.33394 * 122.53868 * 85.00107 * 3 2 1 8 8 C 1.50703 * 125.20154 * 359.75062 * 7 3 2 9 9 N 1.46504 * 109.46978 * 90.00688 * 8 7 3 10 10 C 1.34768 * 120.00020 * 179.97438 * 9 8 7 11 11 O 1.21688 * 119.99753 * 0.02562 * 10 9 8 12 12 C 1.46377 * 120.00011 * 179.97438 * 10 9 8 13 13 H 1.07994 * 119.99882 * 0.02562 * 12 10 9 14 14 C 1.40051 * 119.99918 * 180.02562 * 12 10 9 15 15 N 1.30669 * 120.00130 * 0.02562 * 14 12 10 16 16 Si 1.86793 * 119.99813 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47437 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.47123 * 120.00063 * 16 14 12 19 19 H 1.48498 * 109.47271 * 239.99937 * 16 14 12 20 20 H 1.09002 * 109.47197 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47173 * 300.00168 * 1 2 3 22 22 H 1.09007 * 109.47072 * 60.00035 * 1 2 3 23 23 H 1.08991 * 109.47401 * 239.99862 * 2 1 3 24 24 H 1.09007 * 109.47072 * 119.99965 * 2 1 3 25 25 H 1.07998 * 122.53413 * 359.95690 * 4 3 2 26 26 H 1.08000 * 125.20169 * 179.97438 * 5 4 3 27 27 H 1.09001 * 109.46633 * 210.00164 * 8 7 3 28 28 H 1.08993 * 109.47308 * 330.00523 * 8 7 3 29 29 H 0.97000 * 119.99423 * 359.97438 * 9 8 7 30 30 H 0.96997 * 120.00249 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3760 2.0891 -1.1625 5 6 2.8017 3.3409 -0.9864 6 16 2.7813 3.7352 0.7276 7 6 2.1791 2.1300 1.1203 8 6 1.8692 1.6340 2.5092 9 7 3.0642 1.0102 3.0829 10 6 3.0228 0.4920 4.3263 11 8 1.9928 0.5419 4.9723 12 6 4.2166 -0.1318 4.8993 13 1 5.1306 -0.1765 4.3258 14 6 4.1735 -0.6708 6.1912 15 7 3.0675 -0.6172 6.8850 16 14 5.6971 -1.4662 6.9227 17 1 6.8102 -1.3986 5.9419 18 1 6.0854 -0.7456 8.1618 19 1 5.4074 -2.8863 7.2461 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5139 0.8900 25 1 2.3050 1.6314 -2.1382 26 1 3.1115 4.0100 -1.7755 27 1 1.5615 2.4725 3.1341 28 1 1.0638 0.9012 2.4621 29 1 3.8851 0.9701 2.5677 30 1 3.0377 -0.9901 7.7799 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087309493.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:06:19 Heat of formation + Delta-G solvation = -44.264780 kcal Electronic energy + Delta-G solvation = -14500.558019 eV Core-core repulsion = 11999.929888 eV Total energy + Delta-G solvation = -2500.628130 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.01735 -38.99225 -35.36667 -34.47504 -33.59263 -30.95417 -28.51376 -26.76572 -24.49171 -22.91919 -21.78197 -19.74270 -19.06808 -18.05028 -17.40625 -16.53523 -16.11246 -15.79078 -15.44334 -14.84657 -14.64931 -14.33277 -13.90257 -13.77988 -13.19518 -13.05179 -12.93744 -12.73906 -12.69307 -12.62955 -12.25592 -11.98582 -11.82150 -11.47268 -10.95859 -10.06303 -9.55414 -9.52328 -9.28193 -8.30441 -6.87820 0.01992 0.69551 1.12480 1.39966 1.40108 1.58346 1.76200 2.25038 2.45067 3.22737 3.58914 3.77489 3.97315 4.17519 4.37590 4.44298 4.49483 4.65991 4.74854 4.85054 4.96274 5.09197 5.19837 5.30714 5.34636 5.57021 5.62841 5.84692 6.13137 6.23452 6.84937 7.49138 8.45402 8.65057 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.032822 B = 0.005949 C = 0.005608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.874449 B = 4705.417136 C = 4992.061572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.069 4.069 3 C -0.081 4.081 4 C -0.136 4.136 5 C -0.195 4.195 6 S 0.085 5.915 7 C -0.213 4.213 8 C 0.212 3.788 9 N -0.747 5.747 10 C 0.539 3.461 11 O -0.631 6.631 12 C -0.571 4.571 13 H 0.086 0.914 14 C 0.029 3.971 15 N -0.822 5.822 16 Si 1.000 3.000 17 H -0.248 1.248 18 H -0.268 1.268 19 H -0.267 1.267 20 H 0.067 0.933 21 H 0.035 0.965 22 H 0.071 0.929 23 H 0.096 0.904 24 H 0.049 0.951 25 H 0.169 0.831 26 H 0.197 0.803 27 H 0.034 0.966 28 H 0.054 0.946 29 H 0.393 0.607 30 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.364 4.127 -17.025 17.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 C -0.095 4.095 4 C -0.165 4.165 5 C -0.331 4.331 6 S 0.350 5.650 7 C -0.331 4.331 8 C 0.086 3.914 9 N -0.402 5.402 10 C 0.343 3.657 11 O -0.519 6.519 12 C -0.608 4.608 13 H 0.105 0.895 14 C -0.186 4.186 15 N -0.451 5.451 16 Si 0.819 3.181 17 H -0.170 1.170 18 H -0.193 1.193 19 H -0.192 1.192 20 H 0.086 0.914 21 H 0.054 0.946 22 H 0.090 0.910 23 H 0.114 0.886 24 H 0.068 0.932 25 H 0.187 0.813 26 H 0.214 0.786 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.226 0.774 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.883 5.481 -15.572 16.532 hybrid contribution 0.234 -1.380 -0.230 1.418 sum 1.117 4.102 -15.802 16.363 Atomic orbital electron populations 1.21696 0.94157 1.02274 1.01746 1.20329 0.96617 0.91069 1.02891 1.19166 1.00581 0.97963 0.91800 1.20255 1.02444 0.94372 0.99473 1.25977 1.07847 1.00999 0.98265 1.84375 1.64867 1.12857 1.02857 1.24204 1.12038 0.98832 0.97978 1.19075 0.89207 0.95480 0.87641 1.45897 1.13020 1.64162 1.17131 1.18640 0.89315 0.78039 0.79664 1.90553 1.35187 1.64007 1.62143 1.21433 0.97387 1.40343 1.01611 0.89548 1.26988 1.00542 0.94350 0.96753 1.70190 1.29247 1.35399 1.10270 0.84949 0.76927 0.77840 0.78423 1.17049 1.19279 1.19154 0.91446 0.94626 0.90973 0.88591 0.93230 0.81343 0.78622 0.94723 0.92790 0.77409 0.91478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 9.84 71.98 0.71 -2.68 16 2 C -0.07 -1.80 5.56 29.85 0.17 -1.64 16 3 C -0.08 -2.21 5.06 -20.92 -0.11 -2.32 16 4 C -0.14 -2.84 9.96 21.22 0.21 -2.62 16 5 C -0.20 -3.90 11.23 66.72 0.75 -3.15 16 6 S 0.09 2.30 23.33 -56.49 -1.32 0.99 16 7 C -0.21 -6.94 5.87 24.59 0.14 -6.80 16 8 C 0.21 8.94 5.57 85.63 0.48 9.41 16 9 N -0.75 -35.53 5.54 -471.15 -2.61 -38.14 16 10 C 0.54 32.21 7.75 86.36 0.67 32.88 16 11 O -0.63 -43.39 15.02 -4.31 -0.06 -43.45 16 12 C -0.57 -33.07 9.54 24.83 0.24 -32.83 16 13 H 0.09 4.51 7.85 -2.91 -0.02 4.49 16 14 C 0.03 1.62 5.50 85.31 0.47 2.09 16 15 N -0.82 -50.99 11.83 21.84 0.26 -50.73 16 16 Si 1.00 41.40 29.56 68.60 2.03 43.43 16 17 H -0.25 -9.49 7.11 99.48 0.71 -8.79 16 18 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 19 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 20 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 21 H 0.03 1.00 7.27 -2.39 -0.02 0.99 16 22 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 23 H 0.10 1.95 8.11 -2.39 -0.02 1.93 16 24 H 0.05 1.60 7.52 -2.38 -0.02 1.58 16 25 H 0.17 2.45 8.06 -2.91 -0.02 2.43 16 26 H 0.20 2.49 8.06 -2.91 -0.02 2.46 16 27 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.05 2.41 6.51 -2.39 -0.02 2.39 16 29 H 0.39 16.70 8.44 -92.71 -0.78 15.92 16 30 H 0.28 15.37 8.29 -92.71 -0.77 14.60 16 Total: -1.00 -75.36 277.01 2.39 -72.97 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: 0.37 Total: 22.59 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: 3.73 Total: -7.65 kcal Atomic # 7 Polarization: -86.51 SS G_CDS: -2.35 Total: -88.87 kcal Atomic # 8 Polarization: -43.39 SS G_CDS: -0.06 Total: -43.45 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -1.32 Total: 0.99 kcal Total: -75.36 2.39 -72.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087309493.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.704 kcal (2) G-P(sol) polarization free energy of solvation -75.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds