Wall clock time and date at job start Mon Mar 30 2020 04:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31020 * 1 3 3 Si 1.86802 * 119.99802 * 2 1 4 4 H 1.48494 * 109.46993 * 239.99533 * 3 2 1 5 5 H 1.48504 * 109.47092 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47250 * 119.99448 * 3 2 1 7 7 C 1.39721 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99384 * 186.16297 * 7 2 1 9 9 C 1.41155 * 119.99950 * 6.15789 * 7 2 1 10 10 C 1.37700 * 122.85921 * 174.00235 * 9 7 2 11 11 S 1.70993 * 108.83798 * 179.97438 * 10 9 7 12 12 C 1.75894 * 90.81078 * 0.02562 * 11 10 9 13 13 C 1.50697 * 124.99330 * 179.73778 * 12 11 10 14 14 C 1.53003 * 109.46638 * 270.02084 * 13 12 11 15 15 H 1.08997 * 110.43730 * 303.90546 * 14 13 12 16 16 C 1.54812 * 110.48521 * 181.22084 * 14 13 12 17 17 C 1.55000 * 102.09041 * 220.44181 * 16 14 13 18 18 O 1.44379 * 103.49178 * 37.02599 * 17 16 14 19 19 C 1.43752 * 106.97105 * 319.93724 * 18 17 16 20 20 N 1.28795 * 110.01339 * 359.97438 * 12 11 10 21 21 H 0.97003 * 120.00323 * 0.02562 * 1 2 3 22 22 H 1.08003 * 125.57865 * 359.95861 * 10 9 7 23 23 H 1.09000 * 109.47294 * 30.01688 * 13 12 11 24 24 H 1.08998 * 109.47289 * 150.02164 * 13 12 11 25 25 H 1.08999 * 110.91099 * 338.64019 * 16 14 13 26 26 H 1.09008 * 110.90673 * 102.24578 * 16 14 13 27 27 H 1.08997 * 110.61727 * 278.51724 * 17 16 14 28 28 H 1.09002 * 110.61570 * 155.52519 * 17 16 14 29 29 H 1.08997 * 109.87900 * 267.08711 * 19 18 17 30 30 H 1.08999 * 110.00033 * 146.00898 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2442 1.6178 0.0000 4 1 3.0979 1.6964 -1.2124 5 1 1.2791 2.7465 -0.0006 6 1 3.0978 1.6966 1.2126 7 6 2.0088 -1.2100 0.0005 8 1 3.0841 -1.2125 0.1010 9 6 1.3092 -2.4290 -0.1300 10 6 1.9434 -3.6446 -0.2574 11 16 0.7613 -4.8730 -0.3893 12 6 -0.5267 -3.6814 -0.2664 13 6 -2.0002 -3.9942 -0.3082 14 6 -2.4912 -3.9446 -1.7564 15 1 -2.2645 -2.9761 -2.2022 16 6 -4.0108 -4.2327 -1.8235 17 6 -4.1152 -5.1335 -3.0806 18 8 -2.9202 -5.9412 -3.0164 19 6 -1.8546 -5.0801 -2.5810 20 7 -0.0253 -2.5018 -0.1406 21 1 -0.4851 0.8400 -0.0004 22 1 3.0125 -3.7970 -0.2718 23 1 -2.1720 -4.9903 0.0997 24 1 -2.5445 -3.2597 0.2854 25 1 -4.3452 -4.7663 -0.9338 26 1 -4.5761 -3.3104 -1.9579 27 1 -4.1213 -4.5283 -3.9870 28 1 -5.0054 -5.7606 -3.0305 29 1 -1.3368 -4.6650 -3.4456 30 1 -1.1529 -5.6391 -1.9620 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169076998.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:15 Heat of formation + Delta-G solvation = -40.090703 kcal Electronic energy + Delta-G solvation = -14763.962003 eV Core-core repulsion = 12263.514874 eV Total energy + Delta-G solvation = -2500.447129 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.52982 -39.58277 -35.59661 -34.57780 -31.69845 -30.24469 -27.93725 -27.42293 -24.15622 -22.98926 -21.66798 -20.21106 -19.63135 -17.50644 -17.05757 -17.01851 -16.95281 -15.88675 -15.53121 -14.80995 -14.68488 -14.59911 -13.75676 -13.50137 -13.41243 -13.13631 -12.95239 -12.66376 -12.39487 -12.24887 -12.05101 -11.79497 -11.67043 -11.51867 -11.14530 -10.62411 -9.91922 -9.86645 -9.26547 -8.49025 -6.41380 0.39402 1.09498 1.36116 1.40849 1.48754 1.73052 2.21918 2.34314 3.05136 3.40365 3.42610 3.77247 3.92155 3.95188 4.27429 4.36560 4.40829 4.74409 4.80862 4.82221 4.92238 4.98061 5.03671 5.08569 5.13216 5.22747 5.34320 5.51366 5.93734 6.14244 6.52248 6.85757 7.65788 8.40450 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.031836 B = 0.007091 C = 0.006162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.290898 B = 3947.607284 C = 4543.173937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.029 3.971 3 Si 0.989 3.011 4 H -0.262 1.262 5 H -0.264 1.264 6 H -0.260 1.260 7 C -0.474 4.474 8 H 0.080 0.920 9 C 0.196 3.804 10 C -0.491 4.491 11 S 0.009 5.991 12 C 0.063 3.937 13 C -0.020 4.020 14 C -0.110 4.110 15 H 0.067 0.933 16 C -0.139 4.139 17 C 0.041 3.959 18 O -0.396 6.396 19 C 0.051 3.949 20 N -0.438 5.438 21 H 0.282 0.718 22 H 0.133 0.867 23 H 0.101 0.899 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.064 0.936 28 H 0.118 0.882 29 H 0.048 0.952 30 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.965 -4.532 -3.191 10.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.190 4.190 3 Si 0.809 3.191 4 H -0.187 1.187 5 H -0.188 1.188 6 H -0.184 1.184 7 C -0.508 4.508 8 H 0.099 0.901 9 C 0.074 3.926 10 C -0.630 4.630 11 S 0.258 5.742 12 C -0.221 4.221 13 C -0.061 4.061 14 C -0.131 4.131 15 H 0.086 0.914 16 C -0.177 4.177 17 C -0.035 4.035 18 O -0.316 6.316 19 C -0.026 4.026 20 N -0.153 5.153 21 H 0.092 0.908 22 H 0.151 0.849 23 H 0.120 0.880 24 H 0.110 0.890 25 H 0.113 0.887 26 H 0.115 0.885 27 H 0.083 0.917 28 H 0.135 0.865 29 H 0.066 0.934 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.395 -5.192 -3.283 11.225 hybrid contribution 1.553 1.781 0.164 2.369 sum -7.842 -3.410 -3.119 9.102 Atomic orbital electron populations 1.70174 1.08453 1.29501 1.32297 1.26887 0.95893 1.04339 0.91930 0.85161 0.78604 0.75384 0.79926 1.18653 1.18796 1.18380 1.19274 0.94754 0.89961 1.46821 0.90149 1.18446 0.86539 0.93990 0.93655 1.25345 1.02052 0.95862 1.39714 1.82239 1.00321 1.15069 1.76602 1.28651 1.00646 0.90199 1.02561 1.20311 0.85155 1.03338 0.97341 1.22423 0.97045 0.98945 0.94637 0.91429 1.23196 0.93031 1.01545 0.99880 1.23793 0.88568 0.93852 0.97309 1.88827 1.19244 1.34805 1.88683 1.23262 0.90458 0.91512 0.97361 1.67377 1.11923 1.21400 1.14563 0.90809 0.84864 0.88039 0.88961 0.88724 0.88500 0.91733 0.86450 0.93406 0.90076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -42.41 11.72 21.79 0.26 -42.16 16 2 C 0.03 1.53 5.49 85.17 0.47 2.00 16 3 Si 0.99 39.42 29.56 68.60 2.03 41.45 16 4 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 5 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 6 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 7 C -0.47 -27.21 9.23 23.35 0.22 -26.99 16 8 H 0.08 4.43 7.85 -2.91 -0.02 4.41 16 9 C 0.20 11.34 6.46 39.46 0.25 11.60 16 10 C -0.49 -26.16 10.98 67.69 0.74 -25.42 16 11 S 0.01 0.39 21.58 -56.49 -1.22 -0.83 16 12 C 0.06 2.85 6.38 88.55 0.56 3.42 16 13 C -0.02 -0.68 5.06 29.85 0.15 -0.53 16 14 C -0.11 -3.32 3.07 -9.80 -0.03 -3.35 16 15 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 16 C -0.14 -2.96 6.71 31.90 0.21 -2.75 16 17 C 0.04 0.85 7.72 72.67 0.56 1.41 16 18 O -0.40 -11.47 11.52 -148.98 -1.72 -13.18 16 19 C 0.05 1.60 7.05 72.35 0.51 2.11 16 20 N -0.44 -23.95 8.49 -180.35 -1.53 -25.48 16 21 H 0.28 13.79 8.30 -92.71 -0.77 13.02 16 22 H 0.13 6.91 8.06 -2.91 -0.02 6.88 16 23 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 24 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 25 H 0.09 1.76 7.87 -2.39 -0.02 1.74 16 26 H 0.10 1.78 8.14 -2.38 -0.02 1.76 16 27 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.08 2.70 5.87 -2.39 -0.01 2.68 16 Total: -1.00 -65.87 267.27 2.60 -63.26 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 1.14 Total: 15.43 kcal Atomic # 6 Polarization: -42.15 SS G_CDS: 3.65 Total: -38.50 kcal Atomic # 7 Polarization: -66.36 SS G_CDS: -1.28 Total: -67.64 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -1.72 Total: -13.18 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.45 kcal Atomic # 16 Polarization: 0.39 SS G_CDS: -1.22 Total: -0.83 kcal Total: -65.87 2.60 -63.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169076998.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.171 kcal (2) G-P(sol) polarization free energy of solvation -65.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds