Wall clock time and date at job start Mon Mar 30 2020 04:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29457 * 120.00068 * 2 1 4 4 O 1.41598 * 119.99990 * 0.02562 * 3 2 1 5 5 C 1.47389 * 120.00000 * 180.02562 * 2 1 3 6 6 C 1.39663 * 120.16938 * 359.97438 * 5 2 1 7 7 C 1.37814 * 119.94333 * 179.97438 * 6 5 2 8 8 C 1.38782 * 120.28362 * 0.26216 * 7 6 5 9 9 F 1.35103 * 119.83177 * 179.72046 * 8 7 6 10 10 C 1.38341 * 120.34154 * 359.48017 * 8 7 6 11 11 C 1.38681 * 120.05158 * 0.51511 * 10 8 7 12 12 O 1.35592 * 120.14011 * 179.76165 * 11 10 8 13 13 C 1.34808 * 117.00271 * 354.40807 * 12 11 10 14 14 H 1.07999 * 120.00236 * 5.05525 * 13 12 11 15 15 C 1.38673 * 119.99846 * 185.06160 * 13 12 11 16 16 N 1.31541 * 120.00157 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99745 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47132 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47021 * 119.99744 * 17 15 13 20 20 H 1.48505 * 109.47238 * 239.99897 * 17 15 13 21 21 H 1.08999 * 109.46991 * 269.99732 * 1 2 3 22 22 H 1.08992 * 109.47308 * 30.00257 * 1 2 3 23 23 H 1.09000 * 109.47013 * 150.00521 * 1 2 3 24 24 H 0.96697 * 114.00021 * 180.02562 * 4 3 2 25 25 H 1.08002 * 120.02653 * 359.96202 * 6 5 2 26 26 H 1.07992 * 119.86039 * 179.97438 * 7 6 5 27 27 H 1.08005 * 119.97673 * 180.28151 * 10 8 7 28 28 H 0.97001 * 120.00173 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1543 1.1211 0.0000 4 8 1.4463 2.3474 0.0005 5 6 2.2439 -1.2764 -0.0006 6 6 1.5492 -2.4880 -0.0006 7 6 2.2430 -3.6788 -0.0016 8 6 3.6308 -3.6802 0.0028 9 9 4.3017 -4.8529 0.0074 10 6 4.3308 -2.4870 -0.0026 11 6 3.6469 -1.2805 -0.0016 12 8 4.3313 -0.1100 -0.0019 13 6 5.6723 -0.1850 0.1138 14 1 6.1609 -1.1481 0.1192 15 6 6.4244 0.9746 0.2261 16 7 5.8295 2.1478 0.2193 17 14 8.2826 0.8707 0.3872 18 1 8.7022 -0.5537 0.3680 19 1 8.9186 1.5888 -0.7463 20 1 8.7042 1.4943 1.6674 21 1 -0.3633 0.0000 1.0277 22 1 -0.3633 0.8899 -0.5138 23 1 -0.3633 -0.8900 -0.5138 24 1 2.0147 3.1297 0.0001 25 1 0.4692 -2.4917 0.0005 26 1 1.7044 -4.6148 -0.0012 27 1 5.4109 -2.4950 -0.0037 28 1 6.3555 2.9589 0.2982 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213573337.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:46 Heat of formation + Delta-G solvation = -57.296989 kcal Electronic energy + Delta-G solvation = -16648.441416 eV Core-core repulsion = 13581.034991 eV Total energy + Delta-G solvation = -3067.406425 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.87321 -40.89224 -38.43821 -37.61550 -34.88659 -34.31514 -31.28336 -30.27814 -29.05842 -27.30447 -24.23783 -23.34111 -20.87083 -20.07722 -19.12263 -17.73662 -17.11285 -17.02204 -16.72981 -16.61288 -15.95513 -15.61734 -15.49426 -15.03315 -14.92652 -14.79828 -13.95327 -13.51921 -13.39251 -13.20751 -12.96724 -12.78586 -12.46039 -12.20914 -12.10056 -11.52340 -10.86647 -10.81601 -10.44233 -9.57499 -8.93484 -8.47118 -6.14527 -0.09261 0.57276 1.34591 1.41487 1.51207 1.54345 2.14038 2.40796 2.75253 3.10231 3.24378 3.48008 3.68478 3.99336 4.22383 4.35448 4.46511 4.70719 4.74227 4.84193 5.03372 5.14615 5.24305 5.28587 5.42012 5.53921 5.93289 6.03700 6.09020 6.93933 7.08749 7.72057 8.71524 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.017025 B = 0.010938 C = 0.006688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.205957 B = 2559.210394 C = 4185.630633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.145 3.855 3 N -0.336 5.336 4 O -0.428 6.428 5 C -0.157 4.157 6 C 0.001 3.999 7 C -0.225 4.225 8 C 0.152 3.848 9 F -0.144 7.144 10 C -0.294 4.294 11 C 0.160 3.840 12 O -0.163 6.163 13 C -0.429 4.429 14 H 0.097 0.903 15 C -0.008 4.008 16 N -0.886 5.886 17 Si 1.012 2.988 18 H -0.256 1.256 19 H -0.268 1.268 20 H -0.268 1.268 21 H 0.091 0.909 22 H 0.066 0.934 23 H 0.109 0.891 24 H 0.409 0.591 25 H 0.184 0.816 26 H 0.171 0.829 27 H 0.127 0.873 28 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.750 -7.635 -0.075 10.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.043 4.043 3 N -0.082 5.082 4 O -0.337 6.337 5 C -0.161 4.161 6 C -0.018 4.018 7 C -0.245 4.245 8 C 0.131 3.869 9 F -0.122 7.122 10 C -0.314 4.314 11 C 0.103 3.897 12 O -0.064 6.064 13 C -0.505 4.505 14 H 0.114 0.886 15 C -0.209 4.209 16 N -0.521 5.521 17 Si 0.832 3.168 18 H -0.180 1.180 19 H -0.193 1.193 20 H -0.193 1.193 21 H 0.109 0.891 22 H 0.085 0.915 23 H 0.127 0.873 24 H 0.258 0.742 25 H 0.201 0.799 26 H 0.188 0.812 27 H 0.144 0.856 28 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.385 -7.070 -0.083 10.224 hybrid contribution 1.081 0.508 0.059 1.196 sum -6.304 -6.562 -0.024 9.099 Atomic orbital electron populations 1.21229 0.88743 1.04680 1.04303 1.23516 0.95993 0.90489 0.94284 1.77563 1.22847 0.92123 1.15620 1.88100 1.35915 1.14098 1.95556 1.17871 0.88622 0.92332 1.17228 1.21141 1.01273 0.87751 0.91668 1.20979 0.90479 1.00645 1.12356 1.17760 0.91120 0.79459 0.98530 1.91443 1.81287 1.45881 1.93627 1.21017 1.01295 0.91633 1.17445 1.19752 0.92125 0.86159 0.91691 1.84179 1.20265 1.25221 1.76747 1.21934 0.79558 0.95553 1.53453 0.88558 1.26450 1.05438 0.93564 0.95455 1.70219 1.38082 0.98175 1.45618 0.84624 0.74184 0.79419 0.78571 1.17986 1.19273 1.19303 0.89081 0.91490 0.87294 0.74172 0.79913 0.81179 0.85567 0.91845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.60 9.27 71.24 0.66 -2.94 15 2 C 0.14 5.80 7.11 45.32 0.32 6.13 15 3 N -0.34 -16.18 9.98 -43.02 -0.43 -16.61 15 4 O -0.43 -17.72 13.74 -38.78 -0.53 -18.25 15 5 C -0.16 -6.28 5.88 -20.02 -0.12 -6.39 15 6 C 0.00 0.04 9.35 22.51 0.21 0.25 15 7 C -0.23 -6.34 10.00 22.30 0.22 -6.11 15 8 C 0.15 5.42 7.30 22.42 0.16 5.58 15 9 F -0.14 -4.89 17.26 44.97 0.78 -4.11 15 10 C -0.29 -12.89 9.13 22.40 0.20 -12.68 15 11 C 0.16 7.74 6.66 22.88 0.15 7.89 15 12 O -0.16 -9.45 7.63 -20.78 -0.16 -9.61 15 13 C -0.43 -24.52 9.49 67.92 0.64 -23.87 15 14 H 0.10 5.16 5.21 -2.91 -0.02 5.14 15 15 C -0.01 -0.42 5.49 84.84 0.47 0.05 15 16 N -0.89 -52.10 13.67 21.62 0.30 -51.81 15 17 Si 1.01 42.30 29.55 68.60 2.03 44.33 15 18 H -0.26 -10.12 7.11 99.48 0.71 -9.41 15 19 H -0.27 -10.74 7.11 99.48 0.71 -10.03 15 20 H -0.27 -10.77 7.11 99.48 0.71 -10.06 15 21 H 0.09 2.21 8.14 -2.39 -0.02 2.19 15 22 H 0.07 1.93 7.35 -2.39 -0.02 1.92 15 23 H 0.11 2.11 6.47 -2.39 -0.02 2.10 15 24 H 0.41 14.94 9.28 -74.06 -0.69 14.25 15 25 H 0.18 3.26 6.35 -2.91 -0.02 3.24 15 26 H 0.17 3.35 8.06 -2.91 -0.02 3.33 15 27 H 0.13 5.79 5.64 -2.91 -0.02 5.77 15 28 H 0.27 14.66 8.31 -92.71 -0.77 13.89 15 Total: -1.00 -71.29 257.66 5.44 -65.85 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: 0.54 Total: 22.32 kcal Atomic # 6 Polarization: -35.04 SS G_CDS: 2.93 Total: -32.11 kcal Atomic # 7 Polarization: -68.28 SS G_CDS: -0.13 Total: -68.42 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.69 Total: -27.86 kcal Atomic # 9 Polarization: -4.89 SS G_CDS: 0.78 Total: -4.11 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -71.29 5.44 -65.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213573337.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.549 kcal (2) G-P(sol) polarization free energy of solvation -71.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds