Wall clock time and date at job start Mon Mar 30 2020 03:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 N 1.12406 * 1 3 3 N 1.12396 * 179.97438 * 2 1 4 4 C 1.32394 * 120.00233 * 359.20480 * 3 2 1 5 5 N 1.33774 * 128.95853 * 0.02562 * 4 3 2 6 6 O 1.20913 * 108.78120 * 179.97438 * 5 4 3 7 7 N 1.20723 * 116.54225 * 359.97438 * 6 5 4 8 8 C 1.30916 * 110.09574 * 0.02562 * 7 6 5 9 9 N 1.38986 * 128.75507 * 179.97438 * 8 7 6 10 10 C 1.46499 * 119.99509 * 0.02562 * 9 8 7 11 11 C 1.50695 * 109.47016 * 90.00540 * 10 9 8 12 12 H 1.08000 * 120.00264 * 359.97438 * 11 10 9 13 13 C 1.37877 * 120.00222 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99749 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00348 * 180.02562 * 13 11 10 16 16 H 1.48493 * 109.47185 * 59.99717 * 15 13 11 17 17 H 1.48499 * 109.46892 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.46818 * 299.99806 * 15 13 11 19 19 N 1.28991 * 120.00092 * 180.02562 * 9 8 7 20 20 O 1.21805 * 119.99950 * 179.97438 * 19 9 8 21 21 H 1.09004 * 109.46982 * 210.00295 * 10 9 8 22 22 H 1.08995 * 109.47624 * 330.00123 * 10 9 8 23 23 H 0.97001 * 119.99759 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 7 1.1241 0.0000 0.0000 3 7 2.2480 0.0005 0.0000 4 6 2.9105 -1.1456 0.0159 5 7 2.4308 -2.3943 0.0328 6 8 3.3599 -3.1681 0.0432 7 7 4.4656 -2.6836 0.0361 8 6 4.3841 -1.3771 0.0186 9 7 5.4118 -0.4414 0.0061 10 6 6.8075 -0.8864 0.0114 11 6 7.2856 -1.0574 -1.4074 12 1 6.6166 -0.8553 -2.2308 13 6 8.5772 -1.4718 -1.6545 14 7 9.3921 -1.7175 -0.6518 15 14 9.1702 -1.6831 -3.4133 16 1 9.0662 -0.3867 -4.1298 17 1 10.5849 -2.1343 -3.4078 18 1 8.3304 -2.6972 -4.1003 19 7 5.1365 0.8187 -0.0103 20 8 6.0371 1.6387 -0.0209 21 1 7.4242 -0.1421 0.5154 22 1 6.8836 -1.8378 0.5376 23 1 10.3007 -2.0094 -0.8257 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219065267.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:08 Heat of formation + Delta-G solvation = 238.828635 kcal Electronic energy + Delta-G solvation = -16390.057029 eV Core-core repulsion = 13284.163944 eV Total energy + Delta-G solvation = -3105.893085 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 239.055 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.09459 -44.93588 -41.67963 -39.11320 -37.96885 -35.64550 -35.17537 -34.18785 -30.56326 -28.15636 -26.79902 -25.83648 -23.23259 -21.63628 -20.68409 -20.34955 -19.70001 -19.46860 -18.99484 -18.42116 -17.90674 -17.41513 -16.90848 -16.32318 -15.03011 -14.49351 -14.28470 -13.75317 -13.71674 -13.47540 -13.33412 -13.01160 -12.69752 -12.38405 -12.35360 -11.88690 -10.94638 -10.86358 -10.72563 -9.79307 -8.35055 -6.51167 -0.88166 -0.61541 -0.52421 0.66308 0.80676 0.90096 1.30301 1.40477 1.41929 1.50506 2.06385 2.19173 2.33515 2.59821 2.99181 3.13814 4.22582 4.40809 4.52632 4.86928 5.48164 5.54998 5.73707 6.49923 6.98718 7.15487 7.25355 7.67925 8.74017 Molecular weight = 239.06amu Principal moments of inertia in cm(-1) A = 0.032031 B = 0.007227 C = 0.006618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.939124 B = 3873.315904 C = 4230.119331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.029 5.029 2 N 0.282 4.718 3 N -0.275 5.275 4 C 0.193 3.807 5 N -0.380 5.380 6 O 0.363 5.637 7 N -0.334 5.334 8 C 0.271 3.729 9 N -0.344 5.344 10 C 0.211 3.789 11 C -0.556 4.556 12 H 0.049 0.951 13 C 0.029 3.971 14 N -0.911 5.911 15 Si 0.968 3.032 16 H -0.268 1.268 17 H -0.272 1.272 18 H -0.273 1.273 19 N -0.101 5.101 20 O 0.003 5.997 21 H 0.059 0.941 22 H 0.041 0.959 23 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.701 0.772 1.211 12.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.023 5.023 2 N 0.284 4.716 3 N -0.176 5.176 4 C -0.069 4.069 5 N -0.119 5.119 6 O 0.147 5.853 7 N -0.064 5.064 8 C 0.011 3.989 9 N -0.186 5.186 10 C 0.091 3.909 11 C -0.594 4.594 12 H 0.067 0.933 13 C -0.174 4.174 14 N -0.549 5.549 15 Si 0.792 3.208 16 H -0.192 1.192 17 H -0.197 1.197 18 H -0.198 1.198 19 N 0.254 4.746 20 O -0.324 6.324 21 H 0.077 0.923 22 H 0.059 0.941 23 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.561 -0.504 1.301 14.628 hybrid contribution 1.631 0.284 -0.706 1.800 sum -12.930 -0.220 0.595 12.946 Atomic orbital electron populations 1.87616 0.87312 0.93936 1.33468 1.40981 1.01082 1.17887 1.11692 1.65505 0.89058 1.17439 1.45577 1.22683 0.90311 0.87326 1.06553 1.76559 1.13849 0.98552 1.22904 1.84896 1.05470 1.30828 1.64133 1.75303 1.03995 1.07179 1.19968 1.21562 0.85935 0.87055 1.04303 1.48058 1.06883 1.04366 1.59331 1.20018 0.74385 0.97234 0.99218 1.21155 0.98381 1.48917 0.90948 0.93265 1.25668 0.95961 0.93677 1.02069 1.69984 1.07402 1.44546 1.32946 0.85451 0.77675 0.78877 0.78797 1.19242 1.19694 1.19828 1.77435 1.22817 0.87860 0.86508 1.93939 1.51955 1.41209 1.45320 0.92314 0.94107 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.03 -0.57 20.57 37.02 0.76 0.19 14 2 N 0.28 6.67 10.05 37.02 0.37 7.04 14 3 N -0.27 -7.98 10.77 -55.56 -0.60 -8.58 14 4 C 0.19 6.24 8.21 137.49 1.13 7.37 14 5 N -0.38 -11.33 12.29 -55.57 -0.68 -12.01 14 6 O 0.36 11.36 11.61 140.98 1.64 13.00 14 7 N -0.33 -12.58 11.77 -55.90 -0.66 -13.23 14 8 C 0.27 10.57 8.08 136.23 1.10 11.68 14 9 N -0.34 -15.14 3.34 -348.19 -1.16 -16.30 14 10 C 0.21 10.62 5.09 85.63 0.44 11.06 14 11 C -0.56 -30.03 9.39 25.60 0.24 -29.79 14 12 H 0.05 2.71 7.81 -2.91 -0.02 2.68 14 13 C 0.03 1.53 5.46 84.65 0.46 1.99 14 14 N -0.91 -50.66 13.29 21.45 0.28 -50.38 14 15 Si 0.97 42.24 29.54 68.60 2.03 44.27 14 16 H -0.27 -11.42 7.11 99.48 0.71 -10.72 14 17 H -0.27 -11.36 7.11 99.48 0.71 -10.65 14 18 H -0.27 -11.72 7.11 99.48 0.71 -11.02 14 19 N -0.10 -4.20 11.93 37.02 0.44 -3.76 14 20 O 0.00 0.11 18.11 -5.24 -0.09 0.02 14 21 H 0.06 3.09 7.33 -2.38 -0.02 3.07 14 22 H 0.04 2.15 7.79 -2.39 -0.02 2.13 14 23 H 0.27 14.30 8.31 -92.71 -0.77 13.52 14 Total: -1.00 -55.41 242.04 6.99 -48.42 By element: Atomic # 1 Polarization: -12.27 SS G_CDS: 1.29 Total: -10.98 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: 3.37 Total: 2.30 kcal Atomic # 7 Polarization: -95.79 SS G_CDS: -1.24 Total: -97.03 kcal Atomic # 8 Polarization: 11.48 SS G_CDS: 1.54 Total: 13.02 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -55.41 6.99 -48.42 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219065267.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 287.249 kcal (2) G-P(sol) polarization free energy of solvation -55.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 231.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 238.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds