Wall clock time and date at job start Mon Mar 30 2020 03:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35897 * 116.99903 * 2 1 4 4 C 1.38846 * 120.01966 * 0.25842 * 3 2 1 5 5 C 1.38196 * 120.08247 * 180.25310 * 4 3 2 6 6 C 1.38143 * 120.12690 * 359.48738 * 5 4 3 7 7 N 1.48023 * 119.97997 * 180.23126 * 6 5 4 8 8 O 1.31706 * 119.99932 * 359.97438 * 7 6 5 9 9 O 1.31691 * 120.00205 * 180.02562 * 7 6 5 10 10 C 1.38918 * 120.04002 * 0.25776 * 6 5 4 11 11 O 1.35717 * 120.04489 * 179.97438 * 10 6 5 12 12 C 1.22314 * 117.00535 * 174.29330 * 11 10 6 13 13 H 1.08007 * 119.99402 * 5.09317 * 12 11 10 14 14 C 1.46626 * 120.00568 * 185.09965 * 12 11 10 15 15 N 1.29372 * 119.99798 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 120.00345 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.46921 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47012 * 119.99775 * 16 14 12 19 19 H 1.48498 * 109.47277 * 240.00021 * 16 14 12 20 20 C 1.38563 * 120.02019 * 180.02562 * 3 2 1 21 21 H 1.08996 * 109.47457 * 59.99446 * 1 2 3 22 22 H 1.08995 * 109.46987 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47153 * 299.99879 * 1 2 3 24 24 H 1.07996 * 119.95640 * 0.02562 * 4 3 2 25 25 H 1.08005 * 119.93617 * 179.76363 * 5 4 3 26 26 H 0.96999 * 119.99590 * 180.02562 * 15 14 12 27 27 H 1.07996 * 120.05952 * 0.02562 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2902 2.3756 0.0054 5 6 1.9162 3.6076 0.0001 6 6 3.2955 3.6845 0.0002 7 7 3.9626 5.0059 -0.0003 8 8 3.2412 6.1078 -0.0013 9 8 5.2774 5.0797 -0.0008 10 6 4.0568 2.5225 0.0001 11 8 5.4118 2.5980 -0.0005 12 6 6.0267 1.5462 0.1078 13 1 5.4931 0.6072 0.1155 14 6 7.4880 1.5601 0.2275 15 7 8.1271 2.6849 0.2180 16 14 8.4270 -0.0463 0.3936 17 1 7.4707 -1.1824 0.3782 18 1 9.3776 -0.1834 -0.7390 19 1 9.1788 -0.0501 1.6742 20 6 3.4297 1.2839 -0.0005 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 0.2117 2.3186 0.0101 25 1 1.3259 4.5121 0.0005 26 1 9.0939 2.6940 0.2967 27 1 4.0192 0.3790 -0.0014 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000224839200.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:40 Heat of formation + Delta-G solvation = -14.384493 kcal Electronic energy + Delta-G solvation = -16763.143147 eV Core-core repulsion = 13685.224757 eV Total energy + Delta-G solvation = -3077.918389 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.067 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.26864 -40.66099 -38.79394 -37.16268 -35.79542 -33.99834 -31.85735 -31.24246 -28.43908 -28.01361 -26.11310 -23.84093 -22.86031 -21.03664 -20.28978 -18.38124 -18.09980 -17.83047 -17.41228 -16.86017 -16.59913 -16.43866 -16.10270 -15.60461 -15.39460 -14.42013 -14.14142 -13.89287 -13.37256 -13.12498 -12.94602 -12.47402 -12.05866 -11.86517 -11.75504 -11.45682 -11.16133 -10.94791 -10.92561 -9.86139 -9.62679 -9.42552 -6.22812 -1.19760 0.35330 0.77849 1.15361 1.41885 1.53314 1.60696 1.88530 2.12923 2.22146 2.64537 2.73662 3.65804 3.90227 4.12421 4.30097 4.32399 4.53898 4.54373 4.61697 4.76084 4.88712 4.95364 5.23962 5.28360 5.34902 5.61869 6.18184 6.49472 6.91832 7.12788 7.43738 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.018994 B = 0.009858 C = 0.006517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1473.765904 B = 2839.524453 C = 4295.406894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.320 6.320 3 C 0.158 3.842 4 C -0.214 4.214 5 C -0.020 4.020 6 C -0.059 4.059 7 N 0.013 4.987 8 O -0.500 6.500 9 O -0.444 6.444 10 C -0.029 4.029 11 O -0.022 6.022 12 C -0.214 4.214 13 H 0.169 0.831 14 C -0.016 4.016 15 N -0.714 5.714 16 Si 1.053 2.947 17 H -0.218 1.218 18 H -0.245 1.245 19 H -0.247 1.247 20 C -0.214 4.214 21 H 0.066 0.934 22 H 0.126 0.874 23 H 0.066 0.934 24 H 0.175 0.825 25 H 0.136 0.864 26 H 0.336 0.664 27 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.254 -18.900 0.586 19.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.233 6.233 3 C 0.110 3.890 4 C -0.237 4.237 5 C -0.040 4.040 6 C -0.175 4.175 7 N 0.362 4.638 8 O -0.603 6.603 9 O -0.557 6.557 10 C -0.090 4.090 11 O 0.102 5.898 12 C -0.304 4.304 13 H 0.185 0.815 14 C -0.242 4.242 15 N -0.340 5.340 16 Si 0.862 3.138 17 H -0.139 1.139 18 H -0.169 1.169 19 H -0.170 1.170 20 C -0.234 4.234 21 H 0.084 0.916 22 H 0.144 0.856 23 H 0.085 0.915 24 H 0.192 0.808 25 H 0.154 0.846 26 H 0.152 0.848 27 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -3.933 -18.301 0.555 18.727 hybrid contribution 0.497 1.167 -0.055 1.270 sum -3.436 -17.134 0.500 17.483 Atomic orbital electron populations 1.23435 0.76123 1.05862 1.02565 1.86015 1.23697 1.25378 1.88232 1.18381 0.90781 0.84725 0.95075 1.21156 1.01367 0.89351 1.11815 1.20439 0.89640 0.99795 0.94084 1.19546 0.92966 0.78496 1.26476 1.49199 1.01156 1.02649 1.10782 1.95863 1.63784 1.24656 1.76031 1.96018 0.91393 1.96312 1.71976 1.18078 0.79204 0.92958 1.18807 1.80678 1.18288 1.37243 1.53598 1.24599 0.92217 0.89870 1.23739 0.81455 1.29951 0.94499 1.06028 0.93771 1.69061 1.14997 1.32616 1.17301 0.84138 0.77901 0.71038 0.80706 1.13891 1.16871 1.17041 1.19653 0.93077 0.95141 1.15532 0.91567 0.85637 0.91542 0.80811 0.84586 0.84847 0.81844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 9.81 113.37 1.11 1.34 15 2 O -0.32 -8.40 10.49 -92.39 -0.97 -9.37 15 3 C 0.16 5.26 6.68 22.49 0.15 5.41 15 4 C -0.21 -7.14 9.04 22.41 0.20 -6.93 15 5 C -0.02 -0.91 9.57 22.24 0.21 -0.70 15 6 C -0.06 -3.28 6.90 36.51 0.25 -3.03 15 7 N 0.01 0.92 4.98 -46.12 -0.23 0.69 15 8 O -0.50 -35.35 19.15 3.50 0.07 -35.29 15 9 O -0.44 -32.86 17.89 10.85 0.19 -32.66 15 10 C -0.03 -1.47 6.57 22.58 0.15 -1.32 15 11 O -0.02 -1.16 7.20 73.41 0.53 -0.63 15 12 C -0.21 -8.85 9.48 70.01 0.66 -8.19 15 13 H 0.17 5.41 5.02 -2.91 -0.01 5.39 15 14 C -0.02 -0.57 5.69 87.25 0.50 -0.08 15 15 N -0.71 -31.13 13.66 23.22 0.32 -30.81 15 16 Si 1.05 22.83 29.64 68.60 2.03 24.86 15 17 H -0.22 -3.90 7.11 99.48 0.71 -3.19 15 18 H -0.25 -5.03 7.11 99.48 0.71 -4.33 15 19 H -0.25 -5.14 7.11 99.48 0.71 -4.43 15 20 C -0.21 -8.24 9.06 22.49 0.20 -8.03 15 21 H 0.07 0.94 7.67 -2.39 -0.02 0.92 15 22 H 0.13 1.26 8.14 -2.39 -0.02 1.24 15 23 H 0.07 0.94 7.65 -2.38 -0.02 0.92 15 24 H 0.17 4.06 6.29 -2.91 -0.02 4.04 15 25 H 0.14 5.96 7.57 -2.91 -0.02 5.94 15 26 H 0.34 11.91 8.26 -92.71 -0.77 11.15 15 27 H 0.16 5.19 5.69 -2.91 -0.02 5.17 15 Total: -1.00 -88.54 253.43 6.61 -81.93 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 1.23 Total: 22.82 kcal Atomic # 6 Polarization: -24.97 SS G_CDS: 3.44 Total: -21.53 kcal Atomic # 7 Polarization: -30.21 SS G_CDS: 0.09 Total: -30.13 kcal Atomic # 8 Polarization: -77.77 SS G_CDS: -0.18 Total: -77.95 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: 2.03 Total: 24.86 kcal Total: -88.54 6.61 -81.93 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224839200.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.543 kcal (2) G-P(sol) polarization free energy of solvation -88.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds