Wall clock time and date at job start Mon Mar 30 2020 03:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 110.99867 * 2 1 4 4 C 1.52998 * 109.46900 * 170.77689 * 3 2 1 5 5 H 1.08998 * 110.37089 * 292.97989 * 4 3 2 6 6 C 1.54384 * 110.41060 * 170.50804 * 4 3 2 7 7 C 1.54262 * 105.06222 * 217.36566 * 6 4 3 8 8 C 1.54380 * 105.06004 * 0.02562 * 7 6 4 9 9 N 1.48560 * 110.41465 * 55.33641 * 4 3 2 10 10 C 1.46901 * 110.99642 * 277.81493 * 9 4 3 11 11 C 1.53004 * 109.46983 * 163.04707 * 10 9 4 12 12 C 1.50699 * 115.54961 * 298.99567 * 11 10 9 13 13 H 1.08001 * 120.00782 * 93.53908 * 12 11 10 14 14 C 1.37882 * 119.99843 * 273.53730 * 12 11 10 15 15 N 1.31516 * 119.99539 * 6.38250 * 14 12 11 16 16 Si 1.86797 * 120.00197 * 186.37722 * 14 12 11 17 17 H 1.48502 * 109.47138 * 180.02562 * 16 14 12 18 18 H 1.48492 * 109.47471 * 300.00546 * 16 14 12 19 19 H 1.48504 * 109.46694 * 60.00367 * 16 14 12 20 20 C 1.53004 * 117.49595 * 84.65754 * 11 10 9 21 21 C 1.52995 * 117.50006 * 153.31845 * 11 10 9 22 22 H 1.08997 * 109.47520 * 300.00092 * 1 2 3 23 23 H 1.09003 * 109.47043 * 60.00685 * 1 2 3 24 24 H 1.09005 * 109.47233 * 180.02562 * 1 2 3 25 25 H 1.00896 * 111.00018 * 236.04110 * 2 1 3 26 26 H 1.08995 * 109.47492 * 50.77271 * 3 2 1 27 27 H 1.09002 * 109.46586 * 290.77303 * 3 2 1 28 28 H 1.09000 * 110.32374 * 336.26049 * 6 4 3 29 29 H 1.09004 * 110.32412 * 98.36719 * 6 4 3 30 30 H 1.09005 * 110.32248 * 118.89511 * 7 6 4 31 31 H 1.08996 * 110.32479 * 241.00029 * 7 6 4 32 32 H 1.09007 * 110.40543 * 265.07374 * 8 7 6 33 33 H 1.08988 * 110.41489 * 142.63258 * 8 7 6 34 34 H 1.08998 * 109.47265 * 43.05264 * 10 9 4 35 35 H 1.08999 * 109.47463 * 283.04487 * 10 9 4 36 36 H 0.96999 * 120.00768 * 355.25714 * 15 14 12 37 37 H 1.08998 * 117.49718 * 215.00255 * 20 11 10 38 38 H 1.08992 * 117.49879 * 0.03109 * 20 11 10 39 39 H 1.09004 * 117.49769 * 359.97438 * 21 11 10 40 40 H 1.09003 * 117.49874 * 144.97522 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5074 1.3373 0.2312 5 1 3.7294 0.9847 1.2384 6 6 4.1190 2.7360 0.0008 7 6 5.4806 2.4718 -0.6746 8 6 5.5768 0.9358 -0.7960 9 7 4.1666 0.4696 -0.7786 10 6 4.0843 -0.9450 -0.3911 11 6 4.3769 -1.8250 -1.6081 12 6 3.4274 -1.6671 -2.7676 13 1 3.6608 -0.9795 -3.5671 14 6 2.2605 -2.4006 -2.8080 15 7 1.9143 -3.1424 -1.7787 16 14 1.1715 -2.3405 -4.3245 17 1 -0.0142 -3.2101 -4.1172 18 1 0.7255 -0.9436 -4.5586 19 1 1.9374 -2.8197 -5.5031 20 6 5.8432 -2.1195 -1.9307 21 6 4.9510 -3.2194 -1.3499 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 1.8306 -0.5262 -0.7813 26 1 1.5189 1.9436 0.7960 27 1 1.7853 1.8412 -0.9609 28 1 3.4790 3.3256 -0.6555 29 1 4.2598 3.2490 0.9522 30 1 5.5088 2.9318 -1.6624 31 1 6.2912 2.8561 -0.0555 32 1 6.1242 0.5211 0.0506 33 1 6.0579 0.6580 -1.7337 34 1 3.0833 -1.1620 -0.0181 35 1 4.8158 -1.1509 0.3904 36 1 2.5120 -3.2282 -1.0196 37 1 6.1211 -2.1991 -2.9817 38 1 6.5993 -1.6867 -1.2758 39 1 5.1208 -3.5098 -0.3131 40 1 4.6417 -4.0228 -2.0185 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227728752.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:16 Heat of formation + Delta-G solvation = 33.584565 kcal Electronic energy + Delta-G solvation = -18560.734030 eV Core-core repulsion = 15990.113681 eV Total energy + Delta-G solvation = -2570.620349 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 238.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.98579 -36.41270 -34.91188 -31.77107 -31.12152 -29.62121 -25.69818 -25.17914 -24.41869 -22.35787 -21.23439 -20.38740 -19.68625 -19.18073 -16.46754 -16.17261 -15.00174 -14.66882 -13.95725 -13.75833 -13.67466 -13.32440 -13.25049 -13.03412 -12.41825 -12.03552 -11.85777 -11.61256 -11.42281 -11.30970 -10.84053 -10.79681 -10.63981 -10.39484 -10.29859 -10.22087 -10.11361 -10.03576 -9.32740 -8.35808 -8.30537 -8.20345 -7.76816 -7.55427 -6.20204 -3.90505 3.47109 3.48427 3.66787 4.53592 4.60009 4.78358 5.07904 5.21380 5.32826 5.41014 5.45775 5.62665 5.72968 5.90529 5.92815 5.96596 6.02471 6.06872 6.09736 6.12753 6.21947 6.30095 6.37258 6.42921 6.45685 6.46385 6.53117 6.62156 6.67547 6.89174 7.00658 7.34752 7.45561 7.57855 7.78987 7.96096 8.24266 8.46149 8.59475 9.03281 9.78585 11.17988 Molecular weight = 238.17amu Principal moments of inertia in cm(-1) A = 0.019230 B = 0.011301 C = 0.008672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.703952 B = 2477.119083 C = 3227.990847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.703 5.703 3 C 0.077 3.923 4 C 0.061 3.939 5 H 0.047 0.953 6 C -0.117 4.117 7 C -0.123 4.123 8 C 0.037 3.963 9 N -0.478 5.478 10 C 0.065 3.935 11 C 0.038 3.962 12 C -0.545 4.545 13 H 0.050 0.950 14 C 0.023 3.977 15 N -0.909 5.909 16 Si 1.058 2.942 17 H -0.284 1.284 18 H -0.291 1.291 19 H -0.290 1.290 20 C -0.200 4.200 21 C -0.184 4.184 22 H 0.049 0.951 23 H 0.014 0.986 24 H 0.068 0.932 25 H 0.383 0.617 26 H 0.060 0.940 27 H 0.032 0.968 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.030 0.970 33 H 0.079 0.921 34 H 0.108 0.892 35 H 0.002 0.998 36 H 0.275 0.725 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.563 8.756 3.839 9.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.342 5.342 3 C -0.053 4.053 4 C -0.048 4.048 5 H 0.065 0.935 6 C -0.156 4.156 7 C -0.161 4.161 8 C -0.091 4.091 9 N -0.201 5.201 10 C -0.063 4.063 11 C 0.037 3.963 12 C -0.583 4.583 13 H 0.068 0.932 14 C -0.182 4.182 15 N -0.545 5.545 16 Si 0.887 3.113 17 H -0.210 1.210 18 H -0.218 1.218 19 H -0.217 1.217 20 C -0.238 4.238 21 C -0.222 4.222 22 H 0.068 0.932 23 H 0.032 0.968 24 H 0.087 0.913 25 H 0.210 0.790 26 H 0.078 0.922 27 H 0.050 0.950 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.098 0.902 34 H 0.125 0.875 35 H 0.020 0.980 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.886 8.150 3.348 8.855 hybrid contribution 1.820 0.643 0.526 2.001 sum 2.706 8.793 3.874 9.982 Atomic orbital electron populations 1.22089 0.89184 1.01812 0.98683 1.60752 1.06896 1.13246 1.53274 1.21826 0.93415 0.90916 0.99188 1.22661 0.94525 0.92922 0.94738 0.93506 1.22290 0.96711 0.96593 1.00013 1.22279 0.96637 0.96543 1.00629 1.23080 0.91646 0.93686 1.00720 1.65191 1.09230 1.03083 1.42610 1.22457 1.01953 0.86850 0.95059 1.19068 0.90824 0.91284 0.95079 1.21131 1.06273 1.25730 1.05212 0.93160 1.25585 0.96894 0.94027 1.01687 1.70731 1.37888 1.39155 1.06685 0.83700 0.76225 0.76067 0.75294 1.20987 1.21752 1.21668 1.22879 0.95605 1.05851 0.99442 1.22775 1.06351 0.94336 0.98743 0.93173 0.96761 0.91310 0.78990 0.92194 0.94975 0.91289 0.92046 0.91406 0.92211 0.95186 0.90227 0.87462 0.98021 0.91339 0.90528 0.92094 0.91942 0.89865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.67 60.06 0.64 1.23 16 2 N -0.70 -14.38 5.25 -121.13 -0.64 -15.02 16 3 C 0.08 1.37 5.44 -3.82 -0.02 1.35 16 4 C 0.06 1.06 2.74 -66.07 -0.18 0.88 16 5 H 0.05 0.84 7.99 -51.93 -0.42 0.42 16 6 C -0.12 -1.67 6.55 -25.35 -0.17 -1.83 16 7 C -0.12 -1.74 7.00 -25.35 -0.18 -1.92 16 8 C 0.04 0.65 5.76 -2.19 -0.01 0.63 16 9 N -0.48 -9.59 4.66 -222.15 -1.03 -10.63 16 10 C 0.06 1.45 3.93 -3.82 -0.02 1.43 16 11 C 0.04 0.93 1.06 -155.66 -0.16 0.76 16 12 C -0.55 -14.62 8.25 -34.44 -0.28 -14.91 16 13 H 0.05 1.41 7.82 -52.49 -0.41 1.00 16 14 C 0.02 0.62 4.95 -17.82 -0.09 0.53 16 15 N -0.91 -25.51 13.55 55.43 0.75 -24.76 16 16 Si 1.06 24.81 29.91 -169.99 -5.08 19.72 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 C -0.20 -4.42 9.12 -26.69 -0.24 -4.67 16 21 C -0.18 -4.29 8.55 -26.69 -0.23 -4.52 16 22 H 0.05 0.78 8.13 -51.93 -0.42 0.36 16 23 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 24 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 25 H 0.38 9.03 5.51 -39.29 -0.22 8.81 16 26 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 27 H 0.03 0.60 7.98 -51.93 -0.41 0.18 16 28 H 0.07 0.95 7.75 -51.93 -0.40 0.55 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.03 0.52 7.66 -51.93 -0.40 0.12 16 33 H 0.08 1.47 7.74 -51.94 -0.40 1.06 16 34 H 0.11 2.57 4.55 -51.93 -0.24 2.33 16 35 H 0.00 0.04 7.58 -51.93 -0.39 -0.36 16 36 H 0.28 7.77 6.29 -40.82 -0.26 7.51 16 37 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 38 H 0.06 1.23 7.98 -51.93 -0.41 0.82 16 39 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 40 H 0.08 2.07 8.14 -51.93 -0.42 1.65 16 LS Contribution 308.90 15.07 4.66 4.66 Total: -1.00 -27.54 308.90 -9.27 -36.80 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -6.98 Total: 10.26 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: -0.94 Total: -21.04 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: -0.92 Total: -50.40 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -5.08 Total: 19.72 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -27.54 -9.27 -36.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227728752.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.389 kcal (2) G-P(sol) polarization free energy of solvation -27.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds