Wall clock time and date at job start Mon Mar 30 2020 03:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 110.99867 * 2 1 4 4 C 1.52998 * 109.46900 * 170.77689 * 3 2 1 5 5 H 1.08998 * 110.37089 * 292.97989 * 4 3 2 6 6 C 1.54384 * 110.41060 * 170.50804 * 4 3 2 7 7 C 1.54262 * 105.06222 * 217.36566 * 6 4 3 8 8 C 1.54380 * 105.06004 * 0.02562 * 7 6 4 9 9 N 1.48560 * 110.41465 * 55.33641 * 4 3 2 10 10 C 1.46901 * 110.99642 * 277.81493 * 9 4 3 11 11 C 1.53004 * 109.46983 * 163.04707 * 10 9 4 12 12 C 1.50699 * 115.54961 * 298.99567 * 11 10 9 13 13 H 1.08001 * 120.00782 * 93.53908 * 12 11 10 14 14 C 1.37882 * 119.99843 * 273.53730 * 12 11 10 15 15 N 1.31516 * 119.99539 * 6.38250 * 14 12 11 16 16 Si 1.86797 * 120.00197 * 186.37722 * 14 12 11 17 17 H 1.48502 * 109.47138 * 180.02562 * 16 14 12 18 18 H 1.48492 * 109.47471 * 300.00546 * 16 14 12 19 19 H 1.48504 * 109.46694 * 60.00367 * 16 14 12 20 20 C 1.53004 * 117.49595 * 84.65754 * 11 10 9 21 21 C 1.52995 * 117.50006 * 153.31845 * 11 10 9 22 22 H 1.08997 * 109.47520 * 300.00092 * 1 2 3 23 23 H 1.09003 * 109.47043 * 60.00685 * 1 2 3 24 24 H 1.09005 * 109.47233 * 180.02562 * 1 2 3 25 25 H 1.00896 * 111.00018 * 236.04110 * 2 1 3 26 26 H 1.08995 * 109.47492 * 50.77271 * 3 2 1 27 27 H 1.09002 * 109.46586 * 290.77303 * 3 2 1 28 28 H 1.09000 * 110.32374 * 336.26049 * 6 4 3 29 29 H 1.09004 * 110.32412 * 98.36719 * 6 4 3 30 30 H 1.09005 * 110.32248 * 118.89511 * 7 6 4 31 31 H 1.08996 * 110.32479 * 241.00029 * 7 6 4 32 32 H 1.09007 * 110.40543 * 265.07374 * 8 7 6 33 33 H 1.08988 * 110.41489 * 142.63258 * 8 7 6 34 34 H 1.08998 * 109.47265 * 43.05264 * 10 9 4 35 35 H 1.08999 * 109.47463 * 283.04487 * 10 9 4 36 36 H 0.96999 * 120.00768 * 355.25714 * 15 14 12 37 37 H 1.08998 * 117.49718 * 215.00255 * 20 11 10 38 38 H 1.08992 * 117.49879 * 0.03109 * 20 11 10 39 39 H 1.09004 * 117.49769 * 359.97438 * 21 11 10 40 40 H 1.09003 * 117.49874 * 144.97522 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5074 1.3373 0.2312 5 1 3.7294 0.9847 1.2384 6 6 4.1190 2.7360 0.0008 7 6 5.4806 2.4718 -0.6746 8 6 5.5768 0.9358 -0.7960 9 7 4.1666 0.4696 -0.7786 10 6 4.0843 -0.9450 -0.3911 11 6 4.3769 -1.8250 -1.6081 12 6 3.4274 -1.6671 -2.7676 13 1 3.6608 -0.9795 -3.5671 14 6 2.2605 -2.4006 -2.8080 15 7 1.9143 -3.1424 -1.7787 16 14 1.1715 -2.3405 -4.3245 17 1 -0.0142 -3.2101 -4.1172 18 1 0.7255 -0.9436 -4.5586 19 1 1.9374 -2.8197 -5.5031 20 6 5.8432 -2.1195 -1.9307 21 6 4.9510 -3.2194 -1.3499 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5137 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 1.8306 -0.5262 -0.7813 26 1 1.5189 1.9436 0.7960 27 1 1.7853 1.8412 -0.9609 28 1 3.4790 3.3256 -0.6555 29 1 4.2598 3.2490 0.9522 30 1 5.5088 2.9318 -1.6624 31 1 6.2912 2.8561 -0.0555 32 1 6.1242 0.5211 0.0506 33 1 6.0579 0.6580 -1.7337 34 1 3.0833 -1.1620 -0.0181 35 1 4.8158 -1.1509 0.3904 36 1 2.5120 -3.2282 -1.0196 37 1 6.1211 -2.1991 -2.9817 38 1 6.5993 -1.6867 -1.2758 39 1 5.1208 -3.5098 -0.3131 40 1 4.6417 -4.0228 -2.0185 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227728752.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:16 Heat of formation + Delta-G solvation = 16.761770 kcal Electronic energy + Delta-G solvation = -18561.463521 eV Core-core repulsion = 15990.113681 eV Total energy + Delta-G solvation = -2571.349840 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 238.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.45416 -38.18134 -36.36346 -33.80293 -32.57172 -30.97511 -27.36976 -26.71711 -26.23922 -23.84933 -23.04871 -21.68841 -21.10095 -21.04354 -18.38786 -17.59594 -16.55016 -16.06176 -15.62287 -15.52224 -15.31308 -14.92037 -14.69664 -14.56577 -14.21710 -13.72382 -13.36016 -13.10027 -12.81693 -12.72004 -12.63156 -12.42214 -12.23497 -12.04321 -11.95889 -11.73363 -11.64630 -11.33321 -11.13495 -10.33515 -10.27649 -10.09331 -9.31198 -9.08070 -8.34376 -6.04131 1.55461 1.60452 1.79625 2.62836 3.06307 3.37644 3.39525 3.50784 3.88228 3.96994 4.11040 4.28730 4.30275 4.39240 4.43830 4.50729 4.60292 4.63582 4.65539 4.68066 4.75788 4.80836 4.85613 4.94739 4.99360 5.02074 5.07084 5.10982 5.21893 5.27224 5.39204 5.48008 5.67783 6.12363 6.29072 6.35577 6.40333 6.48897 6.54898 6.92159 7.69354 9.03983 Molecular weight = 238.17amu Principal moments of inertia in cm(-1) A = 0.019230 B = 0.011301 C = 0.008672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.703952 B = 2477.119083 C = 3227.990847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.720 5.720 3 C 0.077 3.923 4 C 0.058 3.942 5 H 0.043 0.957 6 C -0.109 4.109 7 C -0.115 4.115 8 C 0.033 3.967 9 N -0.499 5.499 10 C 0.078 3.922 11 C 0.019 3.981 12 C -0.549 4.549 13 H 0.030 0.970 14 C -0.011 4.011 15 N -0.925 5.925 16 Si 1.093 2.907 17 H -0.286 1.286 18 H -0.282 1.282 19 H -0.280 1.280 20 C -0.181 4.181 21 C -0.187 4.187 22 H 0.078 0.922 23 H 0.014 0.986 24 H 0.052 0.948 25 H 0.364 0.636 26 H 0.086 0.914 27 H 0.021 0.979 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.033 0.967 33 H 0.064 0.936 34 H 0.090 0.910 35 H 0.001 0.999 36 H 0.266 0.734 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.042 10.616 4.397 11.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.356 5.356 3 C -0.053 4.053 4 C -0.051 4.051 5 H 0.061 0.939 6 C -0.148 4.148 7 C -0.153 4.153 8 C -0.095 4.095 9 N -0.222 5.222 10 C -0.050 4.050 11 C 0.018 3.982 12 C -0.588 4.588 13 H 0.049 0.951 14 C -0.212 4.212 15 N -0.561 5.561 16 Si 0.919 3.081 17 H -0.212 1.212 18 H -0.208 1.208 19 H -0.206 1.206 20 C -0.218 4.218 21 C -0.225 4.225 22 H 0.097 0.903 23 H 0.033 0.967 24 H 0.070 0.930 25 H 0.188 0.812 26 H 0.104 0.896 27 H 0.040 0.960 28 H 0.092 0.908 29 H 0.108 0.892 30 H 0.089 0.911 31 H 0.106 0.894 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.108 0.892 35 H 0.019 0.981 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.376 10.033 3.917 10.859 hybrid contribution 1.695 0.069 0.358 1.733 sum 3.071 10.102 4.275 11.391 Atomic orbital electron populations 1.22117 0.88234 1.01216 1.00057 1.60787 1.07967 1.14583 1.52265 1.21937 0.94027 0.89735 0.99566 1.22762 0.94233 0.94359 0.93755 0.93935 1.22288 0.96293 0.94579 1.01628 1.22264 0.97660 0.93819 1.01532 1.23115 0.90128 0.96217 1.00005 1.65113 1.11149 1.02114 1.43852 1.22164 1.00806 0.88247 0.93830 1.19139 0.91551 0.92090 0.95382 1.21218 1.06962 1.25075 1.05499 0.95120 1.26513 0.98080 0.93620 1.02990 1.70818 1.37943 1.40353 1.07002 0.83210 0.75088 0.76448 0.73343 1.21214 1.20757 1.20646 1.22845 0.95081 1.04333 0.99521 1.22688 1.07074 0.93695 0.99055 0.90323 0.96735 0.92951 0.81195 0.89556 0.96021 0.90825 0.89206 0.91104 0.89427 0.94914 0.91752 0.89214 0.98097 0.92357 0.91035 0.89849 0.90678 0.92067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.19 10.67 127.69 1.36 2.55 16 2 N -0.72 -29.21 5.25 -537.15 -2.82 -32.03 16 3 C 0.08 2.63 5.44 86.30 0.47 3.09 16 4 C 0.06 1.91 2.74 45.06 0.12 2.03 16 5 H 0.04 1.44 7.99 -2.39 -0.02 1.42 16 6 C -0.11 -2.73 6.55 31.49 0.21 -2.52 16 7 C -0.11 -2.89 7.00 31.49 0.22 -2.67 16 8 C 0.03 1.11 5.76 86.45 0.50 1.61 16 9 N -0.50 -19.58 4.66 -856.76 -3.99 -23.57 16 10 C 0.08 3.49 3.93 86.30 0.34 3.83 16 11 C 0.02 0.93 1.06 -52.93 -0.06 0.88 16 12 C -0.55 -29.86 8.25 25.60 0.21 -29.65 16 13 H 0.03 1.75 7.82 -2.91 -0.02 1.73 16 14 C -0.01 -0.62 4.95 84.66 0.42 -0.20 16 15 N -0.92 -52.80 13.55 21.45 0.29 -52.51 16 16 Si 1.09 50.35 29.91 68.60 2.05 52.40 16 17 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 20 C -0.18 -7.87 9.12 30.62 0.28 -7.59 16 21 C -0.19 -8.78 8.55 30.62 0.26 -8.52 16 22 H 0.08 2.30 8.13 -2.39 -0.02 2.28 16 23 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 24 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 25 H 0.36 17.37 5.51 -89.70 -0.49 16.87 16 26 H 0.09 2.44 8.08 -2.39 -0.02 2.43 16 27 H 0.02 0.78 7.98 -2.39 -0.02 0.76 16 28 H 0.07 1.79 7.75 -2.39 -0.02 1.77 16 29 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 30 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 31 H 0.09 1.74 8.14 -2.39 -0.02 1.73 16 32 H 0.03 1.06 7.66 -2.38 -0.02 1.04 16 33 H 0.06 2.30 7.74 -2.39 -0.02 2.28 16 34 H 0.09 4.36 4.55 -2.39 -0.01 4.35 16 35 H 0.00 0.04 7.58 -2.39 -0.02 0.02 16 36 H 0.27 15.38 6.29 -92.71 -0.58 14.80 16 37 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 38 H 0.08 3.24 7.98 -2.39 -0.02 3.22 16 39 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 40 H 0.06 3.11 8.14 -2.39 -0.02 3.09 16 Total: -1.00 -59.22 308.90 0.55 -58.67 By element: Atomic # 1 Polarization: 33.50 SS G_CDS: 0.68 Total: 34.19 kcal Atomic # 6 Polarization: -41.49 SS G_CDS: 4.34 Total: -37.15 kcal Atomic # 7 Polarization: -101.59 SS G_CDS: -6.52 Total: -108.11 kcal Atomic # 14 Polarization: 50.35 SS G_CDS: 2.05 Total: 52.40 kcal Total: -59.22 0.55 -58.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227728752.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.433 kcal (2) G-P(sol) polarization free energy of solvation -59.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds