Wall clock time and date at job start Mon Mar 30 2020 03:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99732 * 2 1 4 4 H 1.48502 * 109.47003 * 264.98897 * 3 2 1 5 5 H 1.48501 * 109.47337 * 24.99043 * 3 2 1 6 6 H 1.48498 * 109.47059 * 144.99031 * 3 2 1 7 7 C 1.37878 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99657 * 189.58735 * 7 2 1 9 9 C 1.50701 * 119.99904 * 9.57979 * 7 2 1 10 10 H 1.08995 * 109.47143 * 305.45774 * 9 7 2 11 11 N 1.46898 * 109.46900 * 65.45743 * 9 7 2 12 12 C 1.50703 * 109.46704 * 185.45744 * 9 7 2 13 13 C 1.37988 * 120.45417 * 265.02009 * 12 9 7 14 14 N 1.31943 * 120.82150 * 179.72467 * 13 12 9 15 15 C 1.31975 * 121.86653 * 0.53012 * 14 13 12 16 16 C 1.37958 * 120.82168 * 359.47291 * 15 14 13 17 17 N 1.47998 * 120.45689 * 180.27849 * 16 15 14 18 18 O 1.21801 * 119.99796 * 359.97438 * 17 16 15 19 19 O 1.21798 * 120.00111 * 179.97438 * 17 16 15 20 20 C 1.39248 * 120.45244 * 85.00439 * 12 9 7 21 21 O 1.35731 * 120.84773 * 359.97438 * 20 12 9 22 22 H 0.97001 * 119.99953 * 0.02562 * 1 2 3 23 23 H 1.00895 * 111.00102 * 293.55568 * 11 9 7 24 24 H 1.00901 * 110.99972 * 57.51530 * 11 9 7 25 25 H 1.08004 * 119.58719 * 359.97438 * 13 12 9 26 26 H 1.07993 * 119.59336 * 179.74903 * 15 14 13 27 27 H 0.96696 * 113.99991 * 270.02036 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6025 1.9853 -1.3948 5 1 1.3976 2.6810 0.5915 6 1 3.4897 1.4731 0.8032 7 6 2.0046 -1.1940 0.0005 8 1 3.0733 -1.2004 0.1563 9 6 1.2669 -2.4902 -0.2161 10 1 0.4557 -2.5718 0.5073 11 7 0.7140 -2.5173 -1.5768 12 6 2.2179 -3.6454 -0.0370 13 6 2.8496 -4.2068 -1.1278 14 7 3.6877 -5.2149 -0.9788 15 6 3.9498 -5.7338 0.2060 16 6 3.3585 -5.2285 1.3455 17 7 3.6630 -5.8127 2.6708 18 8 4.4399 -6.7464 2.7608 19 8 3.1366 -5.3597 3.6714 20 6 2.4715 -4.1606 1.2315 21 8 1.8704 -3.6351 2.3291 22 1 -0.4850 0.8401 -0.0004 23 1 -0.0038 -1.8174 -1.6895 24 1 1.4425 -2.4024 -2.2654 25 1 2.6586 -3.8136 -2.1154 26 1 4.6390 -6.5614 0.2851 27 1 2.3668 -2.9159 2.7431 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238598192.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:07 Heat of formation + Delta-G solvation = -13.417113 kcal Electronic energy + Delta-G solvation = -16939.066783 eV Core-core repulsion = 13893.483094 eV Total energy + Delta-G solvation = -3045.583689 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.00422 -40.29878 -37.38240 -36.16677 -35.34530 -32.27739 -31.76221 -30.02308 -26.76593 -26.11168 -23.87191 -22.98889 -21.00075 -18.86112 -18.59510 -18.19539 -17.36014 -16.92935 -16.66746 -15.82884 -15.18468 -14.42891 -14.34495 -13.46649 -13.22157 -12.99643 -12.56114 -11.73182 -11.45583 -11.35725 -11.28282 -11.21491 -10.89635 -10.69748 -10.42099 -10.19918 -9.83261 -9.52660 -9.10706 -8.71091 -7.66431 -6.42682 -4.58944 0.02152 1.11193 1.55102 1.61210 3.04261 3.13802 3.14655 3.56635 3.92821 4.08523 4.33708 4.59441 4.73484 4.86419 5.24971 5.56111 5.70620 5.81065 6.34839 6.37089 6.63057 7.21705 7.40181 7.64616 7.67121 7.72675 7.90258 8.27065 8.44589 8.63009 9.12170 10.58309 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.030617 B = 0.007736 C = 0.006987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.301252 B = 3618.639862 C = 4006.690351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.077 3.923 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.564 4.564 8 H 0.055 0.945 9 C 0.247 3.753 10 H 0.074 0.926 11 N -0.850 5.850 12 C -0.101 4.101 13 C 0.157 3.843 14 N -0.480 5.480 15 C 0.156 3.844 16 C -0.136 4.136 17 N 0.043 4.957 18 O -0.183 6.183 19 O -0.145 6.145 20 C 0.219 3.781 21 O -0.461 6.461 22 H 0.270 0.730 23 H 0.355 0.645 24 H 0.315 0.685 25 H 0.178 0.822 26 H 0.177 0.823 27 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.943 -4.918 -0.514 6.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.129 4.129 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.603 4.603 8 H 0.073 0.927 9 C 0.137 3.863 10 H 0.092 0.908 11 N -0.379 5.379 12 C -0.105 4.105 13 C 0.003 3.997 14 N -0.191 5.191 15 C -0.005 4.005 16 C -0.224 4.224 17 N 0.560 4.440 18 O -0.392 6.392 19 O -0.365 6.365 20 C 0.164 3.836 21 O -0.273 6.273 22 H 0.080 0.920 23 H 0.169 0.831 24 H 0.125 0.875 25 H 0.195 0.805 26 H 0.194 0.806 27 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 4.354 -6.014 -1.807 7.642 hybrid contribution 0.834 2.536 1.192 2.923 sum 5.188 -3.479 -0.614 6.276 Atomic orbital electron populations 1.69894 1.05926 1.27873 1.47606 1.24992 0.94892 0.99456 0.93553 0.86508 0.79795 0.82579 0.78595 1.20229 1.20872 1.19857 1.21560 0.94403 0.90762 1.53570 0.92677 1.17916 0.91634 0.86711 0.90080 0.90792 1.59502 1.16633 1.56977 1.04773 1.22108 0.99257 0.98605 0.90559 1.23087 0.87904 0.88494 1.00264 1.68093 1.16341 1.11587 1.23030 1.22596 0.95199 0.97517 0.85184 1.22982 1.09051 1.05443 0.84905 1.43298 0.98596 0.99527 1.02592 1.94492 1.31543 1.20112 1.93077 1.94563 1.51891 1.63671 1.26366 1.18399 0.86872 0.89282 0.89065 1.84656 1.48033 1.54995 1.39618 0.92006 0.83096 0.87510 0.80532 0.80613 0.72777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.97 12.32 55.43 0.68 -21.28 15 2 C 0.08 1.84 5.31 -17.82 -0.09 1.75 15 3 Si 0.90 18.96 29.55 -169.99 -5.02 13.93 15 4 H -0.28 -5.82 7.11 56.52 0.40 -5.42 15 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 15 6 H -0.27 -5.81 7.11 56.52 0.40 -5.40 15 7 C -0.56 -13.13 8.63 -34.44 -0.30 -13.43 15 8 H 0.05 1.30 7.76 -52.49 -0.41 0.89 15 9 C 0.25 5.33 2.57 -70.02 -0.18 5.15 15 10 H 0.07 1.85 7.71 -51.93 -0.40 1.45 15 11 N -0.85 -17.02 8.75 -6.65 -0.06 -17.08 15 12 C -0.10 -1.92 5.02 -104.34 -0.52 -2.44 15 13 C 0.16 2.64 10.44 -17.60 -0.18 2.45 15 14 N -0.48 -7.72 10.36 -13.33 -0.14 -7.86 15 15 C 0.16 2.40 10.71 -17.59 -0.19 2.21 15 16 C -0.14 -2.34 6.89 -79.67 -0.55 -2.88 15 17 N 0.04 0.76 4.45 34.10 0.15 0.91 15 18 O -0.18 -3.13 18.48 -29.46 -0.54 -3.67 15 19 O -0.15 -2.67 17.37 -36.32 -0.63 -3.30 15 20 C 0.22 4.02 6.72 -38.82 -0.26 3.76 15 21 O -0.46 -8.37 10.95 -40.43 -0.44 -8.81 15 22 H 0.27 6.51 8.31 -40.82 -0.34 6.17 15 23 H 0.35 7.69 7.96 -39.29 -0.31 7.38 15 24 H 0.31 5.71 7.35 -39.29 -0.29 5.42 15 25 H 0.18 2.67 6.37 -52.48 -0.33 2.34 15 26 H 0.18 2.23 7.61 -52.49 -0.40 1.83 15 27 H 0.41 6.14 9.06 45.56 0.41 6.55 15 LS Contribution 252.00 15.07 3.80 3.80 Total: -1.00 -25.90 252.00 -5.35 -31.25 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -0.86 Total: 15.56 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -2.28 Total: -3.44 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.64 Total: -45.32 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -1.62 Total: -15.79 kcal Atomic # 14 Polarization: 18.96 SS G_CDS: -5.02 Total: 13.93 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -25.90 -5.35 -31.25 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238598192.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.830 kcal (2) G-P(sol) polarization free energy of solvation -25.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds