Wall clock time and date at job start Mon Mar 30 2020 03:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99732 * 2 1 4 4 H 1.48502 * 109.47003 * 264.98897 * 3 2 1 5 5 H 1.48501 * 109.47337 * 24.99043 * 3 2 1 6 6 H 1.48498 * 109.47059 * 144.99031 * 3 2 1 7 7 C 1.37878 * 120.00103 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99657 * 189.58735 * 7 2 1 9 9 C 1.50701 * 119.99904 * 9.57979 * 7 2 1 10 10 H 1.08995 * 109.47143 * 305.45774 * 9 7 2 11 11 N 1.46898 * 109.46900 * 65.45743 * 9 7 2 12 12 C 1.50703 * 109.46704 * 185.45744 * 9 7 2 13 13 C 1.37988 * 120.45417 * 265.02009 * 12 9 7 14 14 N 1.31943 * 120.82150 * 179.72467 * 13 12 9 15 15 C 1.31975 * 121.86653 * 0.53012 * 14 13 12 16 16 C 1.37958 * 120.82168 * 359.47291 * 15 14 13 17 17 N 1.47998 * 120.45689 * 180.27849 * 16 15 14 18 18 O 1.21801 * 119.99796 * 359.97438 * 17 16 15 19 19 O 1.21798 * 120.00111 * 179.97438 * 17 16 15 20 20 C 1.39248 * 120.45244 * 85.00439 * 12 9 7 21 21 O 1.35731 * 120.84773 * 359.97438 * 20 12 9 22 22 H 0.97001 * 119.99953 * 0.02562 * 1 2 3 23 23 H 1.00895 * 111.00102 * 293.55568 * 11 9 7 24 24 H 1.00901 * 110.99972 * 57.51530 * 11 9 7 25 25 H 1.08004 * 119.58719 * 359.97438 * 13 12 9 26 26 H 1.07993 * 119.59336 * 179.74903 * 15 14 13 27 27 H 0.96696 * 113.99991 * 270.02036 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6025 1.9853 -1.3948 5 1 1.3976 2.6810 0.5915 6 1 3.4897 1.4731 0.8032 7 6 2.0046 -1.1940 0.0005 8 1 3.0733 -1.2004 0.1563 9 6 1.2669 -2.4902 -0.2161 10 1 0.4557 -2.5718 0.5073 11 7 0.7140 -2.5173 -1.5768 12 6 2.2179 -3.6454 -0.0370 13 6 2.8496 -4.2068 -1.1278 14 7 3.6877 -5.2149 -0.9788 15 6 3.9498 -5.7338 0.2060 16 6 3.3585 -5.2285 1.3455 17 7 3.6630 -5.8127 2.6708 18 8 4.4399 -6.7464 2.7608 19 8 3.1366 -5.3597 3.6714 20 6 2.4715 -4.1606 1.2315 21 8 1.8704 -3.6351 2.3291 22 1 -0.4850 0.8401 -0.0004 23 1 -0.0038 -1.8174 -1.6895 24 1 1.4425 -2.4024 -2.2654 25 1 2.6586 -3.8136 -2.1154 26 1 4.6390 -6.5614 0.2851 27 1 2.3668 -2.9159 2.7431 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238598192.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:07 Heat of formation + Delta-G solvation = -32.082876 kcal Electronic energy + Delta-G solvation = -16939.876191 eV Core-core repulsion = 13893.483094 eV Total energy + Delta-G solvation = -3046.393098 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.38104 -41.67812 -38.77358 -37.55107 -36.99460 -33.97164 -33.16377 -31.53377 -28.32428 -27.67280 -25.41697 -24.37362 -22.53996 -20.26040 -19.99472 -19.58230 -18.82264 -18.62201 -18.07459 -17.23006 -16.85463 -16.06875 -15.71779 -14.94657 -14.63333 -14.58091 -14.09570 -13.40204 -13.09218 -12.92830 -12.78138 -12.72959 -12.32812 -12.28846 -12.11573 -11.69217 -11.18729 -10.98332 -10.78003 -10.29928 -9.36134 -8.24020 -6.46228 -1.34251 -0.25766 0.17573 0.24657 1.36693 1.41783 1.47838 2.20473 2.35177 2.57007 2.98276 3.08287 3.24063 3.40481 3.89517 4.15523 4.29658 4.41956 4.77764 4.97210 5.26876 5.45592 5.54791 5.88480 6.33101 6.37951 6.51221 6.56374 6.66642 6.97420 7.27948 8.74894 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.030617 B = 0.007736 C = 0.006987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.301252 B = 3618.639862 C = 4006.690351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.037 3.963 3 Si 0.954 3.046 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.566 4.566 8 H 0.052 0.948 9 C 0.257 3.743 10 H 0.032 0.968 11 N -0.841 5.841 12 C -0.126 4.126 13 C 0.170 3.830 14 N -0.477 5.477 15 C 0.175 3.825 16 C -0.144 4.144 17 N 0.044 4.956 18 O -0.155 6.155 19 O -0.181 6.181 20 C 0.215 3.785 21 O -0.474 6.474 22 H 0.269 0.731 23 H 0.345 0.655 24 H 0.328 0.672 25 H 0.194 0.806 26 H 0.211 0.789 27 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.512 -5.658 -1.338 8.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.166 4.166 3 Si 0.780 3.220 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.605 4.605 8 H 0.070 0.930 9 C 0.146 3.854 10 H 0.050 0.950 11 N -0.370 5.370 12 C -0.129 4.129 13 C 0.016 3.984 14 N -0.187 5.187 15 C 0.014 3.986 16 C -0.232 4.232 17 N 0.560 4.440 18 O -0.373 6.373 19 O -0.391 6.391 20 C 0.159 3.841 21 O -0.288 6.288 22 H 0.078 0.922 23 H 0.158 0.842 24 H 0.139 0.861 25 H 0.211 0.789 26 H 0.227 0.773 27 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 5.892 -6.708 -2.592 9.297 hybrid contribution 0.421 2.639 1.426 3.029 sum 6.314 -4.069 -1.167 7.601 Atomic orbital electron populations 1.69992 1.07044 1.28302 1.48850 1.25607 0.95416 1.02035 0.93514 0.85640 0.78467 0.79380 0.78521 1.19741 1.21311 1.19884 1.21769 0.94247 0.91746 1.52737 0.93007 1.17545 0.90752 0.87427 0.89695 0.94973 1.59432 1.16690 1.56375 1.04453 1.21873 1.00400 0.99051 0.91626 1.23299 0.86864 0.87990 1.00226 1.68238 1.16129 1.11298 1.23069 1.23177 0.94083 0.97155 0.84145 1.23026 1.09489 1.05503 0.85176 1.43343 0.98506 0.99494 1.02676 1.94466 1.30472 1.19334 1.93051 1.94586 1.53173 1.64624 1.26696 1.18533 0.86980 0.89678 0.88875 1.84620 1.48783 1.55565 1.39864 0.92164 0.84196 0.86088 0.78941 0.77261 0.71658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.86 12.32 21.45 0.26 -45.59 15 2 C 0.04 1.78 5.31 84.65 0.45 2.23 15 3 Si 0.95 38.66 29.55 68.60 2.03 40.69 15 4 H -0.27 -10.76 7.11 99.48 0.71 -10.05 15 5 H -0.29 -11.76 7.11 99.48 0.71 -11.05 15 6 H -0.27 -11.02 7.11 99.48 0.71 -10.31 15 7 C -0.57 -26.30 8.63 25.60 0.22 -26.08 15 8 H 0.05 2.41 7.76 -2.91 -0.02 2.38 15 9 C 0.26 11.15 2.57 43.42 0.11 11.26 15 10 H 0.03 1.67 7.71 -2.39 -0.02 1.65 15 11 N -0.84 -33.41 8.75 -174.96 -1.53 -34.94 15 12 C -0.13 -4.65 5.02 -19.68 -0.10 -4.75 15 13 C 0.17 5.36 10.44 84.62 0.88 6.25 15 14 N -0.48 -13.84 10.36 -196.09 -2.03 -15.87 15 15 C 0.17 4.80 10.71 84.60 0.91 5.70 15 16 C -0.14 -4.67 6.89 36.57 0.25 -4.42 15 17 N 0.04 1.47 4.45 -46.03 -0.21 1.26 15 18 O -0.16 -4.88 18.48 18.89 0.35 -4.53 15 19 O -0.18 -6.55 17.37 25.45 0.44 -6.11 15 20 C 0.21 7.75 6.72 22.77 0.15 7.90 15 21 O -0.47 -17.53 10.95 -69.96 -0.77 -18.29 15 22 H 0.27 13.13 8.31 -92.71 -0.77 12.36 15 23 H 0.35 15.05 7.96 -89.70 -0.71 14.33 15 24 H 0.33 11.48 7.35 -89.69 -0.66 10.82 15 25 H 0.19 5.34 6.37 -2.91 -0.02 5.32 15 26 H 0.21 4.31 7.61 -2.91 -0.02 4.29 15 27 H 0.42 12.96 9.06 -74.06 -0.67 12.29 15 Total: -1.00 -53.94 252.00 0.65 -53.29 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: -0.78 Total: 32.02 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 2.88 Total: -1.91 kcal Atomic # 7 Polarization: -91.64 SS G_CDS: -3.50 Total: -95.15 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: 0.03 Total: -28.94 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.69 kcal Total: -53.94 0.65 -53.29 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238598192.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.203 kcal (2) G-P(sol) polarization free energy of solvation -53.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds