Wall clock time and date at job start Mon Mar 30 2020 03:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 N 1.33047 * 119.08627 * 67.37556 * 3 2 1 5 5 C 1.32008 * 121.57607 * 179.74964 * 4 3 2 6 6 N 1.38061 * 120.21116 * 180.26354 * 5 4 3 7 7 C 1.46522 * 119.57359 * 0.51552 * 5 4 3 8 8 C 1.40539 * 120.84170 * 179.76712 * 7 5 4 9 9 H 1.08004 * 120.00409 * 335.44686 * 8 7 5 10 10 C 1.40272 * 119.99829 * 155.44206 * 8 7 5 11 11 N 1.30668 * 120.00341 * 343.85720 * 10 8 7 12 12 Si 1.86803 * 120.00098 * 163.86283 * 10 8 7 13 13 H 1.48498 * 109.47287 * 89.99608 * 12 10 8 14 14 H 1.48500 * 109.47122 * 209.99954 * 12 10 8 15 15 H 1.48504 * 109.46912 * 329.99896 * 12 10 8 16 16 C 1.41246 * 118.31194 * 359.74944 * 7 5 4 17 17 C 1.36594 * 118.46844 * 359.97438 * 16 7 5 18 18 C 1.50701 * 119.88736 * 180.02562 * 17 16 7 19 19 F 1.39894 * 109.47374 * 209.98556 * 18 17 16 20 20 F 1.39906 * 109.46876 * 329.98914 * 18 17 16 21 21 H 0.97003 * 120.00138 * 186.46850 * 6 5 4 22 22 H 0.97004 * 120.00401 * 6.47134 * 6 5 4 23 23 H 0.96997 * 120.00620 * 175.43173 * 11 10 8 24 24 H 1.08001 * 120.76804 * 179.97438 * 16 7 5 25 25 H 1.09000 * 109.46970 * 89.97919 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2150 -0.4463 -1.0732 5 6 4.5338 -0.4633 -1.1280 6 7 5.1763 -0.9282 -2.2582 7 6 5.3115 0.0093 0.0203 8 6 6.7166 -0.0015 -0.0074 9 1 7.2387 -0.6886 -0.6568 10 6 7.4409 0.8802 0.8084 11 7 6.8447 1.9100 1.3484 12 14 9.2581 0.5825 1.1228 13 1 10.0605 1.2776 0.0844 14 1 9.6212 1.1082 2.4633 15 1 9.5371 -0.8752 1.0705 16 6 4.6131 0.4764 1.1558 17 6 3.2475 0.4661 1.1299 18 6 2.4701 0.9578 2.3237 19 9 1.2507 0.2764 2.3991 20 9 3.2080 0.7240 3.4891 21 1 6.1412 -1.0277 -2.2613 22 1 4.6628 -1.1553 -3.0492 23 1 7.3279 2.4820 1.9649 24 1 5.1466 0.8334 2.0243 25 1 2.2833 2.0267 2.2204 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238620294.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:17 Heat of formation + Delta-G solvation = -62.263490 kcal Electronic energy + Delta-G solvation = -16409.246655 eV Core-core repulsion = 13250.457312 eV Total energy + Delta-G solvation = -3158.789343 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 239.056 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.94230 -47.96160 -40.40139 -37.36342 -36.06789 -35.37528 -32.87751 -31.25580 -28.13071 -26.66908 -24.20084 -22.47011 -20.17193 -19.45377 -18.59798 -18.37551 -17.52869 -17.47355 -17.00161 -16.13254 -15.48224 -15.16120 -14.82531 -14.74423 -14.48775 -14.03343 -13.92909 -13.85023 -13.47810 -13.39963 -13.14286 -12.82485 -12.63898 -12.18688 -11.74697 -11.28409 -11.20336 -10.30079 -10.07282 -8.96632 -8.63853 -6.32577 0.11930 1.03312 1.46750 1.50744 1.62935 1.86617 2.12785 2.19229 2.78770 2.89412 2.98241 3.31003 3.47943 3.60807 3.81393 4.10868 4.40789 4.77791 4.98511 5.07252 5.48263 5.53125 5.78415 6.21817 6.47893 6.52817 6.73197 6.92198 7.01897 7.78925 8.07066 Molecular weight = 239.06amu Principal moments of inertia in cm(-1) A = 0.027200 B = 0.009211 C = 0.007097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.149956 B = 3039.200529 C = 3944.131011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C 0.305 3.695 3 C 0.032 3.968 4 N -0.516 5.516 5 C 0.316 3.684 6 N -0.836 5.836 7 C 0.039 3.961 8 C -0.415 4.415 9 H 0.110 0.890 10 C 0.036 3.964 11 N -0.781 5.781 12 Si 0.989 3.011 13 H -0.259 1.259 14 H -0.271 1.271 15 H -0.252 1.252 16 C -0.154 4.154 17 C -0.152 4.152 18 C 0.315 3.685 19 F -0.212 7.212 20 F -0.205 7.205 21 H 0.413 0.587 22 H 0.401 0.599 23 H 0.303 0.697 24 H 0.135 0.865 25 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.632 0.112 0.254 6.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.007 4.007 3 C -0.097 4.097 4 N -0.236 5.236 5 C 0.066 3.934 6 N -0.386 5.386 7 C 0.030 3.970 8 C -0.443 4.443 9 H 0.128 0.872 10 C -0.186 4.186 11 N -0.403 5.403 12 Si 0.809 3.191 13 H -0.183 1.183 14 H -0.195 1.195 15 H -0.175 1.175 16 C -0.178 4.178 17 C -0.161 4.161 18 C 0.261 3.739 19 F -0.193 7.193 20 F -0.186 7.186 21 H 0.245 0.755 22 H 0.230 0.770 23 H 0.114 0.886 24 H 0.152 0.848 25 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.297 0.103 -0.193 4.303 hybrid contribution 1.424 0.122 0.695 1.589 sum 5.721 0.225 0.502 5.748 Atomic orbital electron populations 1.80998 1.12351 1.12896 1.10685 1.25364 0.92103 0.92040 0.91193 1.14733 0.84261 1.16814 0.93918 1.66462 1.09185 1.20923 1.27025 1.19759 0.86714 0.98369 0.88601 1.41375 1.09804 1.75185 1.12191 1.19442 0.94647 0.92898 0.90018 1.19975 0.90482 1.14485 1.19341 0.87180 1.26984 1.06251 0.92212 0.93162 1.69701 1.41921 1.09379 1.19297 0.85047 0.74795 0.80467 0.78779 1.18314 1.19521 1.17488 1.20683 0.90514 1.07451 0.99128 1.20353 0.95753 1.05194 0.94777 1.20531 0.75145 0.97648 0.80595 1.92948 1.46544 1.83571 1.96228 1.92939 1.77740 1.96372 1.51537 0.75452 0.77009 0.88560 0.84760 0.83833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -22.68 18.30 19.00 0.35 -22.34 15 2 C 0.30 14.02 12.64 88.33 1.12 15.14 15 3 C 0.03 1.48 6.57 40.59 0.27 1.75 15 4 N -0.52 -23.66 10.29 -180.87 -1.86 -25.52 15 5 C 0.32 13.44 7.97 135.44 1.08 14.52 15 6 N -0.84 -27.30 8.98 -51.22 -0.46 -27.76 15 7 C 0.04 1.74 5.74 -19.82 -0.11 1.63 15 8 C -0.41 -16.75 8.65 23.33 0.20 -16.54 15 9 H 0.11 3.86 6.74 -2.91 -0.02 3.84 15 10 C 0.04 1.38 5.20 85.36 0.44 1.83 15 11 N -0.78 -32.29 10.90 21.88 0.24 -32.06 15 12 Si 0.99 28.89 29.59 68.60 2.03 30.92 15 13 H -0.26 -7.31 7.11 99.48 0.71 -6.61 15 14 H -0.27 -7.88 7.11 99.48 0.71 -7.18 15 15 H -0.25 -7.15 7.11 99.48 0.71 -6.45 15 16 C -0.15 -6.97 8.06 22.62 0.18 -6.79 15 17 C -0.15 -6.71 5.73 -19.86 -0.11 -6.83 15 18 C 0.31 12.08 5.43 71.24 0.39 12.46 15 19 F -0.21 -8.73 14.38 44.97 0.65 -8.08 15 20 F -0.20 -7.95 16.48 44.97 0.74 -7.21 15 21 H 0.41 11.60 7.21 -92.71 -0.67 10.93 15 22 H 0.40 11.50 8.95 -92.71 -0.83 10.67 15 23 H 0.30 11.19 8.30 -92.71 -0.77 10.43 15 24 H 0.13 6.21 5.77 -2.91 -0.02 6.19 15 25 H 0.14 4.56 8.14 -2.39 -0.02 4.54 15 Total: -1.00 -53.44 241.35 4.93 -48.51 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: -0.20 Total: 26.37 kcal Atomic # 6 Polarization: 13.72 SS G_CDS: 3.45 Total: 17.17 kcal Atomic # 7 Polarization: -105.94 SS G_CDS: -1.73 Total: -107.67 kcal Atomic # 9 Polarization: -16.68 SS G_CDS: 1.39 Total: -15.29 kcal Atomic # 14 Polarization: 28.89 SS G_CDS: 2.03 Total: 30.92 kcal Total: -53.44 4.93 -48.51 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238620294.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.756 kcal (2) G-P(sol) polarization free energy of solvation -53.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds