Wall clock time and date at job start Mon Mar 30 2020 03:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.38857 * 119.57124 * 279.79666 * 3 2 1 5 5 C 1.41054 * 118.91991 * 179.75379 * 4 3 2 6 6 C 1.41565 * 120.94564 * 180.25473 * 5 4 3 7 7 H 1.07998 * 119.99714 * 203.07348 * 6 5 4 8 8 C 1.40037 * 119.99651 * 23.07291 * 6 5 4 9 9 N 1.30737 * 120.00305 * 16.81029 * 8 6 5 10 10 Si 1.86799 * 119.99758 * 196.81475 * 8 6 5 11 11 H 1.48499 * 109.47246 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47541 * 119.99987 * 10 8 6 13 13 H 1.48504 * 109.47237 * 239.99870 * 10 8 6 14 14 C 1.40804 * 118.10931 * 0.46371 * 5 4 3 15 15 C 1.50700 * 120.48752 * 179.80990 * 14 5 4 16 16 F 1.39897 * 109.47252 * 121.74422 * 15 14 5 17 17 F 1.39908 * 109.47087 * 241.74183 * 15 14 5 18 18 C 1.38895 * 119.02092 * 359.53557 * 14 5 4 19 19 N 1.39068 * 119.50731 * 180.25113 * 18 14 5 20 20 N 1.32258 * 120.98495 * 0.23066 * 18 14 5 21 21 H 1.07996 * 120.53824 * 0.02562 * 4 3 2 22 22 H 0.97000 * 119.99782 * 179.97438 * 9 8 6 23 23 H 1.09001 * 109.47509 * 1.74329 * 15 14 5 24 24 H 0.97004 * 119.99769 * 5.85638 * 19 18 14 25 25 H 0.97001 * 120.00104 * 185.86555 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2534 -0.2045 1.1901 5 6 4.6638 -0.2064 1.1734 6 6 5.4056 -0.4168 2.3606 7 1 6.4227 -0.0606 2.4321 8 6 4.8206 -1.0867 3.4423 9 7 3.7386 -1.7982 3.2627 10 14 5.5860 -0.9635 5.1418 11 1 6.7959 -0.1047 5.0787 12 1 4.6050 -0.3689 6.0847 13 1 5.9662 -2.3195 5.6130 14 6 5.3130 0.0114 -0.0569 15 6 6.8179 0.0246 -0.1356 16 9 7.2464 -0.9547 -1.0380 17 9 7.2511 1.2816 -0.5712 18 6 4.5459 0.2081 -1.1980 19 7 5.1766 0.4188 -2.4194 20 7 3.2246 0.1975 -1.1404 21 1 2.7153 -0.3645 2.1127 22 1 3.3336 -2.2625 4.0119 23 1 7.2351 -0.1820 0.8500 24 1 6.1414 0.3435 -2.4864 25 1 4.6518 0.6412 -3.2043 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238621587.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:38 Heat of formation + Delta-G solvation = -53.790244 kcal Electronic energy + Delta-G solvation = -16449.272384 eV Core-core repulsion = 13290.850469 eV Total energy + Delta-G solvation = -3158.421915 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 239.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.20129 -46.14263 -38.95778 -35.88112 -34.93348 -33.33388 -31.73682 -28.72992 -26.82191 -25.44805 -22.03027 -21.45891 -19.02388 -17.28790 -16.82073 -16.39264 -16.20837 -15.74945 -15.07979 -14.83461 -14.02699 -13.66919 -13.25724 -13.11330 -12.81760 -12.58429 -12.38228 -12.22232 -12.10436 -11.75444 -11.48368 -11.24817 -11.16638 -10.56566 -10.04969 -9.94683 -9.50628 -8.49449 -8.44812 -7.27993 -6.98169 -5.06836 1.75128 2.58621 2.86166 2.91392 3.02196 3.29659 3.59120 3.67991 4.28610 4.40530 4.70710 4.77345 5.18987 5.34476 5.65751 6.04300 6.23522 6.50129 6.62652 6.76497 6.83924 7.15910 7.48156 7.87058 7.97787 8.16581 8.26329 8.27477 8.36019 9.25151 9.65552 Molecular weight = 239.06amu Principal moments of inertia in cm(-1) A = 0.016641 B = 0.012335 C = 0.007534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.187438 B = 2269.453631 C = 3715.735524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.298 3.702 3 C 0.208 3.792 4 C -0.175 4.175 5 C 0.177 3.823 6 C -0.440 4.440 7 H 0.093 0.907 8 C 0.078 3.922 9 N -0.763 5.763 10 Si 0.918 3.082 11 H -0.255 1.255 12 H -0.266 1.266 13 H -0.269 1.269 14 C -0.383 4.383 15 C 0.326 3.674 16 F -0.218 7.218 17 F -0.219 7.219 18 C 0.461 3.539 19 N -0.862 5.862 20 N -0.604 5.604 21 H 0.140 0.860 22 H 0.292 0.708 23 H 0.118 0.882 24 H 0.401 0.599 25 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.202 1.302 0.057 6.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.018 4.018 3 C 0.078 3.922 4 C -0.204 4.204 5 C 0.169 3.831 6 C -0.469 4.469 7 H 0.111 0.889 8 C -0.146 4.146 9 N -0.385 5.385 10 Si 0.741 3.259 11 H -0.178 1.178 12 H -0.191 1.191 13 H -0.194 1.194 14 C -0.394 4.394 15 C 0.272 3.728 16 F -0.199 7.199 17 F -0.200 7.200 18 C 0.222 3.778 19 N -0.408 5.408 20 N -0.330 5.330 21 H 0.158 0.842 22 H 0.104 0.896 23 H 0.135 0.865 24 H 0.231 0.769 25 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 3.767 1.263 -0.568 4.013 hybrid contribution 1.350 -0.154 0.994 1.684 sum 5.117 1.109 0.426 5.253 Atomic orbital electron populations 1.81065 1.12170 1.10155 1.09217 1.25541 0.92263 0.92333 0.91653 1.15769 0.84360 1.01490 0.90545 1.22066 0.94608 1.06753 0.96974 1.17148 0.91053 0.84419 0.90517 1.19757 1.00402 1.30464 0.96276 0.88909 1.26095 0.94275 0.92290 1.01950 1.69730 1.16309 1.18055 1.34433 0.86066 0.80474 0.79520 0.79843 1.17791 1.19101 1.19392 1.20170 0.92524 1.32193 0.94493 1.20150 0.91848 0.70703 0.90101 1.92894 1.91511 1.63629 1.71903 1.92920 1.91411 1.43869 1.91844 1.17351 0.87484 0.87919 0.84998 1.42204 1.09419 1.80807 1.08334 1.66643 1.07557 1.30927 1.27845 0.84211 0.89629 0.86460 0.76891 0.77924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.87 18.54 41.84 0.78 -9.10 15 2 C 0.30 6.55 15.52 -22.47 -0.35 6.20 15 3 C 0.21 4.72 6.58 -85.18 -0.56 4.16 15 4 C -0.17 -4.04 8.47 -38.29 -0.32 -4.36 15 5 C 0.18 4.05 5.61 -106.59 -0.60 3.46 15 6 C -0.44 -9.56 8.44 -37.64 -0.32 -9.88 15 7 H 0.09 1.86 6.28 -52.49 -0.33 1.53 15 8 C 0.08 1.62 5.21 -17.34 -0.09 1.53 15 9 N -0.76 -16.69 10.87 55.55 0.60 -16.09 15 10 Si 0.92 15.57 29.59 -169.99 -5.03 10.54 15 11 H -0.25 -4.25 7.11 56.52 0.40 -3.85 15 12 H -0.27 -4.53 7.11 56.52 0.40 -4.12 15 13 H -0.27 -4.55 7.11 56.52 0.40 -4.15 15 14 C -0.38 -8.33 5.47 -103.41 -0.57 -8.90 15 15 C 0.33 6.19 4.81 36.01 0.17 6.36 15 16 F -0.22 -4.08 15.99 2.25 0.04 -4.05 15 17 F -0.22 -4.06 16.56 2.25 0.04 -4.02 15 18 C 0.46 9.92 7.65 -155.17 -1.19 8.74 15 19 N -0.86 -15.23 8.83 31.07 0.27 -14.96 15 20 N -0.60 -13.70 10.28 -10.50 -0.11 -13.81 15 21 H 0.14 3.26 6.13 -52.49 -0.32 2.94 15 22 H 0.29 5.76 8.29 -40.82 -0.34 5.42 15 23 H 0.12 2.08 5.77 -51.93 -0.30 1.78 15 24 H 0.40 6.62 6.23 -40.82 -0.25 6.36 15 25 H 0.39 6.13 8.95 -40.82 -0.37 5.76 15 LS Contribution 241.38 15.07 3.64 3.64 Total: -1.00 -24.58 241.38 -4.30 -28.87 By element: Atomic # 1 Polarization: 12.38 SS G_CDS: -0.70 Total: 11.68 kcal Atomic # 6 Polarization: 11.11 SS G_CDS: -3.82 Total: 7.30 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: 1.55 Total: -53.95 kcal Atomic # 9 Polarization: -8.14 SS G_CDS: 0.07 Total: -8.07 kcal Atomic # 14 Polarization: 15.57 SS G_CDS: -5.03 Total: 10.54 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -24.58 -4.30 -28.87 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238621587.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.918 kcal (2) G-P(sol) polarization free energy of solvation -24.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds