Wall clock time and date at job start Mon Mar 30 2020 03:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.38857 * 119.57124 * 279.79666 * 3 2 1 5 5 C 1.41054 * 118.91991 * 179.75379 * 4 3 2 6 6 C 1.41565 * 120.94564 * 180.25473 * 5 4 3 7 7 H 1.07998 * 119.99714 * 203.07348 * 6 5 4 8 8 C 1.40037 * 119.99651 * 23.07291 * 6 5 4 9 9 N 1.30737 * 120.00305 * 16.81029 * 8 6 5 10 10 Si 1.86799 * 119.99758 * 196.81475 * 8 6 5 11 11 H 1.48499 * 109.47246 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47541 * 119.99987 * 10 8 6 13 13 H 1.48504 * 109.47237 * 239.99870 * 10 8 6 14 14 C 1.40804 * 118.10931 * 0.46371 * 5 4 3 15 15 C 1.50700 * 120.48752 * 179.80990 * 14 5 4 16 16 F 1.39897 * 109.47252 * 121.74422 * 15 14 5 17 17 F 1.39908 * 109.47087 * 241.74183 * 15 14 5 18 18 C 1.38895 * 119.02092 * 359.53557 * 14 5 4 19 19 N 1.39068 * 119.50731 * 180.25113 * 18 14 5 20 20 N 1.32258 * 120.98495 * 0.23066 * 18 14 5 21 21 H 1.07996 * 120.53824 * 0.02562 * 4 3 2 22 22 H 0.97000 * 119.99782 * 179.97438 * 9 8 6 23 23 H 1.09001 * 109.47509 * 1.74329 * 15 14 5 24 24 H 0.97004 * 119.99769 * 5.85638 * 19 18 14 25 25 H 0.97001 * 120.00104 * 185.86555 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2534 -0.2045 1.1901 5 6 4.6638 -0.2064 1.1734 6 6 5.4056 -0.4168 2.3606 7 1 6.4227 -0.0606 2.4321 8 6 4.8206 -1.0867 3.4423 9 7 3.7386 -1.7982 3.2627 10 14 5.5860 -0.9635 5.1418 11 1 6.7959 -0.1047 5.0787 12 1 4.6050 -0.3689 6.0847 13 1 5.9662 -2.3195 5.6130 14 6 5.3130 0.0114 -0.0569 15 6 6.8179 0.0246 -0.1356 16 9 7.2464 -0.9547 -1.0380 17 9 7.2511 1.2816 -0.5712 18 6 4.5459 0.2081 -1.1980 19 7 5.1766 0.4188 -2.4194 20 7 3.2246 0.1975 -1.1404 21 1 2.7153 -0.3645 2.1127 22 1 3.3336 -2.2625 4.0119 23 1 7.2351 -0.1820 0.8500 24 1 6.1414 0.3435 -2.4864 25 1 4.6518 0.6412 -3.2043 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238621587.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:38 Heat of formation + Delta-G solvation = -67.576225 kcal Electronic energy + Delta-G solvation = -16449.870189 eV Core-core repulsion = 13290.850469 eV Total energy + Delta-G solvation = -3159.019720 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 239.056 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -49.70058 -47.63561 -40.63236 -37.62673 -36.54929 -34.94912 -33.38686 -30.36666 -28.47720 -27.07277 -23.66269 -23.12075 -20.67262 -18.83996 -18.48464 -17.89198 -17.78451 -17.30293 -16.57997 -16.38182 -15.67178 -15.38446 -14.83961 -14.62758 -14.38620 -14.07573 -14.05549 -13.90765 -13.83907 -13.29476 -12.94863 -12.79776 -12.71881 -11.94294 -11.65724 -11.49898 -11.11413 -10.18531 -10.14468 -8.87035 -8.60037 -6.74928 0.02378 1.00780 1.47724 1.54246 1.57388 1.63702 1.98117 2.18454 2.63368 2.77119 3.16225 3.19678 3.49666 3.80166 4.11402 4.52491 4.58314 4.83763 5.00584 5.10660 5.17239 5.51722 5.78792 6.20199 6.36228 6.47597 6.61011 6.70563 6.79840 7.61789 8.09990 Molecular weight = 239.06amu Principal moments of inertia in cm(-1) A = 0.016641 B = 0.012335 C = 0.007534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.187438 B = 2269.453631 C = 3715.735524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C 0.302 3.698 3 C 0.201 3.799 4 C -0.187 4.187 5 C 0.154 3.846 6 C -0.452 4.452 7 H 0.109 0.891 8 C 0.043 3.957 9 N -0.791 5.791 10 Si 0.988 3.012 11 H -0.246 1.246 12 H -0.267 1.267 13 H -0.266 1.266 14 C -0.400 4.400 15 C 0.333 3.667 16 F -0.216 7.216 17 F -0.215 7.215 18 C 0.451 3.549 19 N -0.847 5.847 20 N -0.619 5.619 21 H 0.132 0.868 22 H 0.300 0.700 23 H 0.133 0.867 24 H 0.408 0.592 25 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.439 1.402 0.701 7.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.129 5.129 2 C -0.013 4.013 3 C 0.072 3.928 4 C -0.217 4.217 5 C 0.146 3.854 6 C -0.480 4.480 7 H 0.126 0.874 8 C -0.178 4.178 9 N -0.414 5.414 10 Si 0.807 3.193 11 H -0.169 1.169 12 H -0.192 1.192 13 H -0.191 1.191 14 C -0.411 4.411 15 C 0.280 3.720 16 F -0.198 7.198 17 F -0.197 7.197 18 C 0.212 3.788 19 N -0.393 5.393 20 N -0.346 5.346 21 H 0.149 0.851 22 H 0.112 0.888 23 H 0.150 0.850 24 H 0.239 0.761 25 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 5.017 1.369 0.028 5.201 hybrid contribution 0.956 -0.205 0.766 1.242 sum 5.973 1.164 0.794 6.137 Atomic orbital electron populations 1.81052 1.12110 1.10334 1.09409 1.25491 0.92160 0.92200 0.91485 1.15839 0.84550 1.01686 0.90720 1.22044 0.95090 1.07779 0.96738 1.17459 0.91183 0.85100 0.91631 1.20132 1.01183 1.30287 0.96408 0.87358 1.26932 0.94391 0.91359 1.05132 1.69769 1.17319 1.18419 1.35925 0.85035 0.79694 0.79542 0.75010 1.16912 1.19158 1.19054 1.20433 0.94102 1.32346 0.94211 1.20076 0.90389 0.70810 0.90770 1.92895 1.91330 1.63593 1.71946 1.92925 1.91205 1.43689 1.91871 1.17630 0.87341 0.87595 0.86221 1.42114 1.09807 1.79803 1.07599 1.66675 1.08262 1.31940 1.27729 0.85068 0.88821 0.84996 0.76076 0.76653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -19.78 18.54 19.00 0.35 -19.43 15 2 C 0.30 13.34 15.52 88.33 1.37 14.71 15 3 C 0.20 9.21 6.58 40.35 0.27 9.48 15 4 C -0.19 -8.72 8.47 23.11 0.20 -8.52 15 5 C 0.15 7.04 5.61 -21.14 -0.12 6.92 15 6 C -0.45 -19.15 8.44 23.53 0.20 -18.95 15 7 H 0.11 4.12 6.28 -2.91 -0.02 4.10 15 8 C 0.04 1.75 5.21 85.29 0.44 2.19 15 9 N -0.79 -34.35 10.87 21.84 0.24 -34.12 15 10 Si 0.99 30.42 29.59 68.60 2.03 32.45 15 11 H -0.25 -7.21 7.11 99.48 0.71 -6.51 15 12 H -0.27 -8.21 7.11 99.48 0.71 -7.50 15 13 H -0.27 -8.03 7.11 99.48 0.71 -7.32 15 14 C -0.40 -17.08 5.47 -19.08 -0.10 -17.18 15 15 C 0.33 12.09 4.81 71.24 0.34 12.43 15 16 F -0.22 -7.71 15.99 44.97 0.72 -6.99 15 17 F -0.22 -7.56 16.56 44.97 0.74 -6.82 15 18 C 0.45 19.09 7.65 133.02 1.02 20.11 15 19 N -0.85 -28.72 8.83 -55.62 -0.49 -29.21 15 20 N -0.62 -27.97 10.28 -187.12 -1.92 -29.90 15 21 H 0.13 6.24 6.13 -2.91 -0.02 6.23 15 22 H 0.30 11.69 8.29 -92.71 -0.77 10.92 15 23 H 0.13 4.41 5.77 -2.39 -0.01 4.40 15 24 H 0.41 12.74 6.23 -92.71 -0.58 12.16 15 25 H 0.40 11.99 8.95 -92.71 -0.83 11.16 15 Total: -1.00 -50.37 241.38 5.18 -45.19 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: -0.11 Total: 27.64 kcal Atomic # 6 Polarization: 17.57 SS G_CDS: 3.61 Total: 21.18 kcal Atomic # 7 Polarization: -110.83 SS G_CDS: -1.82 Total: -112.66 kcal Atomic # 9 Polarization: -15.27 SS G_CDS: 1.46 Total: -13.81 kcal Atomic # 14 Polarization: 30.42 SS G_CDS: 2.03 Total: 32.45 kcal Total: -50.37 5.18 -45.19 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238621587.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.382 kcal (2) G-P(sol) polarization free energy of solvation -50.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds