Wall clock time and date at job start Mon Mar 30 2020 03:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39239 * 120.47695 * 282.71043 * 3 2 1 5 5 C 1.40947 * 118.14703 * 180.02562 * 4 3 2 6 6 C 1.41268 * 120.49281 * 179.97438 * 5 4 3 7 7 H 1.07994 * 120.00388 * 150.36934 * 6 5 4 8 8 C 1.39860 * 120.00009 * 330.37158 * 6 5 4 9 9 N 1.30907 * 120.00136 * 162.64158 * 8 6 5 10 10 Si 1.86800 * 119.99760 * 342.63651 * 8 6 5 11 11 H 1.48497 * 109.46903 * 90.64476 * 10 8 6 12 12 H 1.48498 * 109.47102 * 210.64303 * 10 8 6 13 13 H 1.48502 * 109.47256 * 330.64611 * 10 8 6 14 14 C 1.40916 * 119.01030 * 0.02562 * 5 4 3 15 15 C 1.50699 * 119.57363 * 179.97438 * 14 5 4 16 16 F 1.39898 * 109.47541 * 201.26886 * 15 14 5 17 17 F 1.39905 * 109.46893 * 321.27093 * 15 14 5 18 18 N 1.31369 * 120.85945 * 359.97438 * 14 5 4 19 19 C 1.32687 * 122.04537 * 0.02562 * 18 14 5 20 20 N 1.37856 * 119.54998 * 180.02562 * 19 18 14 21 21 H 1.07987 * 120.92591 * 359.74491 * 4 3 2 22 22 H 0.96990 * 120.00125 * 179.97438 * 9 8 6 23 23 H 1.09008 * 109.47043 * 81.26521 * 15 14 5 24 24 H 0.97005 * 119.99911 * 180.02562 * 20 19 18 25 25 H 0.96993 * 120.00259 * 0.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2743 -0.2631 1.1706 5 6 4.6826 -0.2493 1.1148 6 6 5.4485 -0.5096 2.2730 7 1 6.4247 -0.9627 2.1843 8 6 4.9424 -0.1805 3.5346 9 7 5.4687 -0.7105 4.6097 10 14 3.5155 1.0156 3.6855 11 1 2.2349 0.2644 3.6572 12 1 3.6255 1.7582 4.9668 13 1 3.5518 1.9749 2.5526 14 6 5.3153 0.0291 -0.1132 15 6 6.8203 0.0476 -0.1871 16 9 7.2234 0.7906 -1.3019 17 9 7.3371 0.6318 0.9744 18 7 4.6101 0.2726 -1.1945 19 6 3.2832 0.2694 -1.1852 20 7 2.5946 0.5314 -2.3504 21 1 2.7576 -0.4679 2.0964 22 1 5.1179 -0.4820 5.4846 23 1 7.1923 -0.9731 -0.2769 24 1 1.6245 0.5311 -2.3509 25 1 3.0799 0.7160 -3.1696 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238626660.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:31 Heat of formation + Delta-G solvation = -57.422209 kcal Electronic energy + Delta-G solvation = -16526.306321 eV Core-core repulsion = 13367.726911 eV Total energy + Delta-G solvation = -3158.579409 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 239.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.63321 -47.65014 -41.01624 -37.75374 -36.47773 -34.98585 -33.56076 -31.65749 -28.58059 -26.25234 -23.94232 -23.55024 -20.35273 -18.92497 -18.69290 -18.53815 -18.08709 -17.49743 -16.83814 -16.10379 -15.73468 -15.52289 -14.98585 -14.63798 -14.52934 -14.33346 -14.18690 -14.01567 -13.82806 -13.51963 -13.48367 -12.80326 -12.54882 -12.09723 -11.74378 -11.61757 -11.09196 -10.50401 -10.37324 -8.96134 -8.89416 -6.36377 -0.31066 0.65844 1.22714 1.33560 1.43687 1.49519 1.88449 2.04883 2.53300 2.63867 2.91071 3.09602 3.31723 3.48464 3.75140 4.17755 4.25701 4.52422 4.66302 4.88180 5.03791 5.30571 5.51230 6.15790 6.32312 6.35267 6.44098 6.71559 6.74517 7.41224 8.16402 Molecular weight = 239.06amu Principal moments of inertia in cm(-1) A = 0.017052 B = 0.014692 C = 0.008400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.632895 B = 1905.406395 C = 3332.529225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.285 3.715 3 C -0.101 4.101 4 C -0.125 4.125 5 C 0.016 3.984 6 C -0.441 4.441 7 H 0.090 0.910 8 C 0.060 3.940 9 N -0.828 5.828 10 Si 0.929 3.071 11 H -0.259 1.259 12 H -0.273 1.273 13 H -0.254 1.254 14 C 0.012 3.988 15 C 0.341 3.659 16 F -0.204 7.204 17 F -0.197 7.197 18 N -0.489 5.489 19 C 0.349 3.651 20 N -0.841 5.841 21 H 0.126 0.874 22 H 0.295 0.705 23 H 0.146 0.854 24 H 0.407 0.593 25 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.854 1.215 -7.016 7.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.131 5.131 2 C -0.029 4.029 3 C -0.113 4.113 4 C -0.155 4.155 5 C 0.010 3.990 6 C -0.471 4.471 7 H 0.108 0.892 8 C -0.157 4.157 9 N -0.454 5.454 10 Si 0.754 3.246 11 H -0.184 1.184 12 H -0.199 1.199 13 H -0.178 1.178 14 C -0.131 4.131 15 C 0.287 3.713 16 F -0.186 7.186 17 F -0.178 7.178 18 N -0.205 5.205 19 C 0.110 3.890 20 N -0.389 5.389 21 H 0.144 0.856 22 H 0.106 0.894 23 H 0.163 0.837 24 H 0.237 0.763 25 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -2.052 1.362 -7.463 7.859 hybrid contribution -0.588 0.367 1.030 1.242 sum -2.640 1.730 -6.432 7.165 Atomic orbital electron populations 1.81170 1.11964 1.11498 1.08474 1.25545 0.92309 0.92295 0.92792 1.16181 0.84277 1.15159 0.95634 1.21519 0.93885 1.03607 0.96451 1.17967 0.91574 0.95384 0.94111 1.19323 1.04179 1.34667 0.88922 0.89185 1.26474 0.98268 0.95875 0.95110 1.69683 1.39548 1.35682 1.00437 0.86060 0.79231 0.80330 0.78996 1.18437 1.19888 1.17833 1.21542 0.95197 1.06149 0.90249 1.19993 0.87420 0.93301 0.70600 1.92931 1.91608 1.80470 1.53573 1.93017 1.87537 1.87049 1.50198 1.66354 1.05450 1.18157 1.30513 1.17600 0.87129 0.98032 0.86288 1.41516 1.08383 1.80861 1.08143 0.85634 0.89378 0.83703 0.76332 0.75767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -16.35 18.54 19.00 0.35 -15.99 15 2 C 0.28 10.11 14.08 88.33 1.24 11.35 15 3 C -0.10 -3.81 5.76 -21.11 -0.12 -3.93 15 4 C -0.13 -5.21 7.09 23.17 0.16 -5.05 15 5 C 0.02 0.70 5.09 -21.22 -0.11 0.60 15 6 C -0.44 -20.96 7.80 23.41 0.18 -20.78 15 7 H 0.09 4.44 6.84 -2.91 -0.02 4.42 15 8 C 0.06 2.86 5.43 85.22 0.46 3.32 15 9 N -0.83 -40.71 13.93 21.81 0.30 -40.40 15 10 Si 0.93 38.55 24.54 68.60 1.68 40.23 15 11 H -0.26 -10.27 6.47 99.48 0.64 -9.63 15 12 H -0.27 -10.83 7.11 99.48 0.71 -10.13 15 13 H -0.25 -10.86 7.01 99.48 0.70 -10.17 15 14 C 0.01 0.47 6.65 43.28 0.29 0.76 15 15 C 0.34 12.37 5.20 71.24 0.37 12.74 15 16 F -0.20 -7.39 16.96 44.97 0.76 -6.62 15 17 F -0.20 -8.07 14.70 44.97 0.66 -7.40 15 18 N -0.49 -18.78 9.84 -178.69 -1.76 -20.54 15 19 C 0.35 12.38 7.75 133.83 1.04 13.42 15 20 N -0.84 -22.52 8.95 -54.78 -0.49 -23.01 15 21 H 0.13 5.25 4.56 -2.92 -0.01 5.23 15 22 H 0.30 13.21 8.30 -92.72 -0.77 12.44 15 23 H 0.15 4.24 8.14 -2.38 -0.02 4.22 15 24 H 0.41 9.70 7.63 -92.70 -0.71 8.99 15 25 H 0.41 9.34 8.94 -92.71 -0.83 8.51 15 Total: -1.00 -52.16 237.31 4.72 -47.43 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -0.31 Total: 13.90 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: 3.52 Total: 12.41 kcal Atomic # 7 Polarization: -98.35 SS G_CDS: -1.59 Total: -99.95 kcal Atomic # 9 Polarization: -15.45 SS G_CDS: 1.42 Total: -14.03 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 1.68 Total: 40.23 kcal Total: -52.16 4.72 -47.43 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238626660.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.989 kcal (2) G-P(sol) polarization free energy of solvation -52.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds