Wall clock time and date at job start Mon Mar 30 2020 03:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 N 1.32675 * 119.91122 * 29.10164 * 3 2 1 5 5 C 1.31780 * 122.11608 * 179.97438 * 4 3 2 6 6 C 1.50694 * 119.16731 * 179.97438 * 5 4 3 7 7 F 1.39903 * 109.47105 * 119.97376 * 6 5 4 8 8 F 1.39899 * 109.47299 * 239.97626 * 6 5 4 9 9 C 1.38419 * 121.66798 * 359.97382 * 5 4 3 10 10 C 1.39003 * 119.58363 * 0.27559 * 9 5 4 11 11 N 1.38312 * 120.96359 * 179.74747 * 10 9 5 12 12 C 1.41901 * 119.90885 * 209.07681 * 3 2 1 13 13 C 1.40391 * 120.81126 * 0.02562 * 12 3 2 14 14 H 1.08002 * 120.00167 * 44.53252 * 13 12 3 15 15 C 1.40326 * 120.00214 * 224.53580 * 13 12 3 16 16 N 1.30654 * 119.99585 * 16.85787 * 15 13 12 17 17 Si 1.86795 * 120.00223 * 196.85791 * 15 13 12 18 18 H 1.48498 * 109.47060 * 59.99965 * 17 15 13 19 19 H 1.48500 * 109.47287 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47080 * 300.00025 * 17 15 13 21 21 H 1.09010 * 109.47085 * 359.97438 * 6 5 4 22 22 H 1.07999 * 120.20783 * 180.02562 * 9 5 4 23 23 H 0.96999 * 119.99767 * 0.02562 * 11 10 9 24 24 H 0.96991 * 119.99974 * 179.97438 * 11 10 9 25 25 H 0.97006 * 119.99524 * 184.13552 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2300 -1.0039 -0.5593 5 6 4.5469 -1.0474 -0.5844 6 6 5.2306 -2.2209 -1.2371 7 9 6.0288 -1.7675 -2.2929 8 9 6.0311 -2.8770 -0.2958 9 6 5.3179 -0.0423 -0.0264 10 6 4.6962 1.0414 0.5829 11 7 5.4388 2.0590 1.1541 12 6 3.2750 1.0760 0.5978 13 6 2.5879 2.1456 1.1933 14 1 1.7426 1.9528 1.8373 15 6 2.9994 3.4653 0.9519 16 7 3.7855 3.7301 -0.0576 17 14 2.4234 4.8433 2.0738 18 1 2.8775 4.5742 3.4617 19 1 2.9936 6.1326 1.6071 20 1 0.9406 4.9187 2.0440 21 1 4.4797 -2.9121 -1.6201 22 1 6.3957 -0.1018 -0.0607 23 1 6.4079 2.0230 1.1327 24 1 4.9905 2.8088 1.5753 25 1 4.1183 4.6316 -0.1895 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238636889.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:26 Heat of formation + Delta-G solvation = -49.754806 kcal Electronic energy + Delta-G solvation = -16318.808823 eV Core-core repulsion = 13160.561898 eV Total energy + Delta-G solvation = -3158.246926 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 239.056 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.39359 -46.39325 -39.07093 -35.51887 -35.20835 -33.18681 -31.18313 -29.16568 -27.17190 -24.77964 -23.02789 -21.02694 -18.24477 -17.89925 -17.16696 -16.64555 -16.02670 -15.81073 -15.51176 -14.30090 -14.05234 -13.64593 -13.53905 -13.24406 -12.80161 -12.64245 -12.38951 -12.05321 -11.87578 -11.63872 -11.57030 -11.47043 -11.01413 -10.64276 -10.41561 -10.25128 -9.67321 -8.63252 -7.99962 -7.30069 -6.90075 -4.86482 1.85799 2.47476 2.84330 2.86359 2.87657 3.61692 3.68199 3.92409 4.26527 4.26764 4.70948 4.92484 5.05933 5.14034 5.46497 5.76982 6.06263 6.31669 6.50126 6.67947 6.77403 6.95506 7.31263 7.79986 7.96575 8.24525 8.49508 8.60242 8.72840 9.02121 9.70211 Molecular weight = 239.06amu Principal moments of inertia in cm(-1) A = 0.028346 B = 0.008633 C = 0.007129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.554855 B = 3242.622538 C = 3926.524641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C 0.321 3.679 3 C 0.065 3.935 4 N -0.449 5.449 5 C 0.000 4.000 6 C 0.335 3.665 7 F -0.206 7.206 8 F -0.207 7.207 9 C -0.208 4.208 10 C 0.224 3.776 11 N -0.843 5.843 12 C 0.089 3.911 13 C -0.453 4.453 14 H 0.092 0.908 15 C 0.067 3.933 16 N -0.770 5.770 17 Si 0.908 3.092 18 H -0.259 1.259 19 H -0.274 1.274 20 H -0.259 1.259 21 H 0.116 0.884 22 H 0.112 0.888 23 H 0.383 0.617 24 H 0.400 0.600 25 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.195 -0.998 1.619 6.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.154 5.154 2 C 0.007 3.993 3 C -0.071 4.071 4 N -0.161 5.161 5 C -0.148 4.148 6 C 0.280 3.720 7 F -0.187 7.187 8 F -0.188 7.188 9 C -0.237 4.237 10 C 0.109 3.891 11 N -0.382 5.382 12 C 0.079 3.921 13 C -0.483 4.483 14 H 0.110 0.890 15 C -0.153 4.153 16 N -0.394 5.394 17 Si 0.731 3.269 18 H -0.183 1.183 19 H -0.198 1.198 20 H -0.183 1.183 21 H 0.134 0.866 22 H 0.130 0.870 23 H 0.209 0.791 24 H 0.233 0.767 25 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.996 -1.446 1.083 4.386 hybrid contribution 1.162 1.734 0.847 2.252 sum 5.158 0.288 1.930 5.515 Atomic orbital electron populations 1.81015 1.12140 1.10430 1.11855 1.24848 0.91573 0.91139 0.91713 1.16014 0.84973 0.97296 1.08858 1.66293 1.08466 1.25453 1.15895 1.19918 0.89541 0.97477 1.07840 1.19887 0.84333 0.90940 0.76805 1.92958 1.76965 1.90819 1.57995 1.92948 1.76893 1.82057 1.66933 1.20667 0.99122 0.96698 1.07246 1.17943 0.90734 0.87790 0.92600 1.42066 1.07017 1.24738 1.64428 1.17845 0.89938 0.92923 0.91406 1.19341 1.14198 0.89727 1.25043 0.88997 1.25985 0.94294 1.00259 0.94755 1.69764 1.24216 1.23871 1.21549 0.86313 0.81004 0.78805 0.80817 1.18289 1.19836 1.18333 0.86629 0.86956 0.79068 0.76737 0.89783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.41 18.54 41.84 0.78 -10.63 15 2 C 0.32 7.66 14.59 -22.47 -0.33 7.33 15 3 C 0.07 1.54 6.66 -84.18 -0.56 0.98 15 4 N -0.45 -10.09 10.12 -6.79 -0.07 -10.16 15 5 C 0.00 -0.01 6.28 -82.55 -0.52 -0.53 15 6 C 0.33 5.79 5.52 36.00 0.20 5.99 15 7 F -0.21 -3.64 17.24 2.25 0.04 -3.60 15 8 F -0.21 -3.55 17.24 2.25 0.04 -3.51 15 9 C -0.21 -4.24 9.44 -39.23 -0.37 -4.61 15 10 C 0.22 4.79 6.30 -83.15 -0.52 4.26 15 11 N -0.84 -15.49 8.04 32.82 0.26 -15.22 15 12 C 0.09 2.08 5.31 -106.18 -0.56 1.52 15 13 C -0.45 -10.49 7.87 -37.99 -0.30 -10.79 15 14 H 0.09 2.14 7.79 -52.49 -0.41 1.73 15 15 C 0.07 1.44 3.54 -17.27 -0.06 1.38 15 16 N -0.77 -16.87 11.31 55.57 0.63 -16.24 15 17 Si 0.91 16.19 29.60 -169.99 -5.03 11.16 15 18 H -0.26 -4.48 7.11 56.52 0.40 -4.08 15 19 H -0.27 -4.74 7.11 56.52 0.40 -4.34 15 20 H -0.26 -4.85 7.11 56.52 0.40 -4.45 15 21 H 0.12 1.73 8.10 -51.92 -0.42 1.31 15 22 H 0.11 2.05 8.06 -52.49 -0.42 1.63 15 23 H 0.38 5.84 8.85 -40.82 -0.36 5.47 15 24 H 0.40 7.48 5.68 -40.82 -0.23 7.24 15 25 H 0.29 5.80 8.30 -40.82 -0.34 5.46 15 LS Contribution 245.68 15.07 3.70 3.70 Total: -1.00 -25.35 245.68 -3.66 -29.01 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -0.98 Total: 9.97 kcal Atomic # 6 Polarization: 8.55 SS G_CDS: -3.03 Total: 5.53 kcal Atomic # 7 Polarization: -53.85 SS G_CDS: 1.60 Total: -52.25 kcal Atomic # 9 Polarization: -7.19 SS G_CDS: 0.08 Total: -7.11 kcal Atomic # 14 Polarization: 16.19 SS G_CDS: -5.03 Total: 11.16 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -25.35 -3.66 -29.01 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238636889.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.747 kcal (2) G-P(sol) polarization free energy of solvation -25.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds