Wall clock time and date at job start Mon Mar 30 2020 03:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 N 1.32675 * 119.91122 * 29.10164 * 3 2 1 5 5 C 1.31780 * 122.11608 * 179.97438 * 4 3 2 6 6 C 1.50694 * 119.16731 * 179.97438 * 5 4 3 7 7 F 1.39903 * 109.47105 * 119.97376 * 6 5 4 8 8 F 1.39899 * 109.47299 * 239.97626 * 6 5 4 9 9 C 1.38419 * 121.66798 * 359.97382 * 5 4 3 10 10 C 1.39003 * 119.58363 * 0.27559 * 9 5 4 11 11 N 1.38312 * 120.96359 * 179.74747 * 10 9 5 12 12 C 1.41901 * 119.90885 * 209.07681 * 3 2 1 13 13 C 1.40391 * 120.81126 * 0.02562 * 12 3 2 14 14 H 1.08002 * 120.00167 * 44.53252 * 13 12 3 15 15 C 1.40326 * 120.00214 * 224.53580 * 13 12 3 16 16 N 1.30654 * 119.99585 * 16.85787 * 15 13 12 17 17 Si 1.86795 * 120.00223 * 196.85791 * 15 13 12 18 18 H 1.48498 * 109.47060 * 59.99965 * 17 15 13 19 19 H 1.48500 * 109.47287 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47080 * 300.00025 * 17 15 13 21 21 H 1.09010 * 109.47085 * 359.97438 * 6 5 4 22 22 H 1.07999 * 120.20783 * 180.02562 * 9 5 4 23 23 H 0.96999 * 119.99767 * 0.02562 * 11 10 9 24 24 H 0.96991 * 119.99974 * 179.97438 * 11 10 9 25 25 H 0.97006 * 119.99524 * 184.13552 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 7 3.2300 -1.0039 -0.5593 5 6 4.5469 -1.0474 -0.5844 6 6 5.2306 -2.2209 -1.2371 7 9 6.0288 -1.7675 -2.2929 8 9 6.0311 -2.8770 -0.2958 9 6 5.3179 -0.0423 -0.0264 10 6 4.6962 1.0414 0.5829 11 7 5.4388 2.0590 1.1541 12 6 3.2750 1.0760 0.5978 13 6 2.5879 2.1456 1.1933 14 1 1.7426 1.9528 1.8373 15 6 2.9994 3.4653 0.9519 16 7 3.7855 3.7301 -0.0576 17 14 2.4234 4.8433 2.0738 18 1 2.8775 4.5742 3.4617 19 1 2.9936 6.1326 1.6071 20 1 0.9406 4.9187 2.0440 21 1 4.4797 -2.9121 -1.6201 22 1 6.3957 -0.1018 -0.0607 23 1 6.4079 2.0230 1.1327 24 1 4.9905 2.8088 1.5753 25 1 4.1183 4.6316 -0.1895 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238636889.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:26 Heat of formation + Delta-G solvation = -65.265929 kcal Electronic energy + Delta-G solvation = -16319.481436 eV Core-core repulsion = 13160.561898 eV Total energy + Delta-G solvation = -3158.919538 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 239.056 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.78068 -47.77569 -40.73179 -37.31140 -36.89196 -34.82676 -32.84961 -30.78803 -28.74738 -26.39249 -24.71092 -22.61210 -19.90289 -19.55185 -18.69209 -18.03370 -17.53364 -17.31951 -17.11674 -15.88565 -15.64450 -15.25097 -15.18728 -14.69685 -14.18064 -14.17384 -14.12076 -13.77195 -13.47159 -13.41289 -13.28292 -12.95293 -12.49749 -12.09772 -12.00140 -11.83828 -11.27469 -10.30565 -9.70345 -8.92664 -8.50490 -6.58892 0.14320 0.81431 1.39775 1.42019 1.49685 1.85136 2.14131 2.18071 2.57181 2.72019 3.21717 3.39034 3.41428 3.51536 4.09813 4.34975 4.45020 4.67458 4.86354 5.03162 5.12365 5.29578 5.68471 6.07676 6.27884 6.55823 6.75773 6.90011 7.29210 7.33168 8.09948 Molecular weight = 239.06amu Principal moments of inertia in cm(-1) A = 0.028346 B = 0.008633 C = 0.007129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.554855 B = 3242.622538 C = 3926.524641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.322 3.678 3 C 0.036 3.964 4 N -0.462 5.462 5 C -0.001 4.001 6 C 0.342 3.658 7 F -0.206 7.206 8 F -0.204 7.204 9 C -0.217 4.217 10 C 0.221 3.779 11 N -0.831 5.831 12 C 0.068 3.932 13 C -0.478 4.478 14 H 0.079 0.921 15 C 0.044 3.956 16 N -0.790 5.790 17 Si 0.970 3.030 18 H -0.248 1.248 19 H -0.260 1.260 20 H -0.275 1.275 21 H 0.144 0.856 22 H 0.135 0.865 23 H 0.399 0.601 24 H 0.400 0.600 25 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.494 -0.463 1.867 7.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.171 5.171 2 C 0.010 3.990 3 C -0.099 4.099 4 N -0.175 5.175 5 C -0.149 4.149 6 C 0.288 3.712 7 F -0.187 7.187 8 F -0.185 7.185 9 C -0.246 4.246 10 C 0.105 3.895 11 N -0.371 5.371 12 C 0.058 3.942 13 C -0.507 4.507 14 H 0.097 0.903 15 C -0.174 4.174 16 N -0.414 5.414 17 Si 0.791 3.209 18 H -0.172 1.172 19 H -0.184 1.184 20 H -0.200 1.200 21 H 0.161 0.839 22 H 0.153 0.847 23 H 0.228 0.772 24 H 0.232 0.768 25 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.318 -0.909 1.333 5.558 hybrid contribution 0.843 1.558 0.747 1.923 sum 6.162 0.649 2.080 6.536 Atomic orbital electron populations 1.80980 1.12415 1.11031 1.12704 1.25081 0.91868 0.90741 0.91335 1.16172 0.84876 0.98475 1.10396 1.66324 1.09307 1.25412 1.16426 1.20568 0.89231 0.98416 1.06730 1.19930 0.84627 0.90146 0.76504 1.92959 1.76995 1.90901 1.57889 1.92956 1.76835 1.81758 1.66979 1.20943 1.00316 0.96334 1.06984 1.18078 0.90326 0.88642 0.92485 1.42010 1.07847 1.23820 1.63380 1.18105 0.91152 0.93136 0.91821 1.19433 1.14588 0.90891 1.25827 0.90253 1.26549 0.94039 1.01352 0.95509 1.69765 1.24548 1.25048 1.22087 0.85391 0.79371 0.76556 0.79596 1.17150 1.18406 1.20010 0.83899 0.84680 0.77160 0.76787 0.88755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -24.01 18.54 19.00 0.35 -23.66 15 2 C 0.32 15.70 14.59 88.33 1.29 16.98 15 3 C 0.04 1.70 6.66 41.17 0.27 1.98 15 4 N -0.46 -20.58 10.12 -175.40 -1.78 -22.36 15 5 C 0.00 -0.03 6.28 42.61 0.27 0.24 15 6 C 0.34 11.02 5.52 71.23 0.39 11.42 15 7 F -0.21 -6.77 17.24 44.97 0.78 -6.00 15 8 F -0.20 -6.49 17.24 44.97 0.78 -5.71 15 9 C -0.22 -8.47 9.44 22.50 0.21 -8.25 15 10 C 0.22 9.22 6.30 39.28 0.25 9.47 15 11 N -0.83 -29.13 8.04 -50.08 -0.40 -29.54 15 12 C 0.07 3.19 5.31 -20.87 -0.11 3.08 15 13 C -0.48 -22.22 7.87 23.30 0.18 -22.04 15 14 H 0.08 3.78 7.79 -2.91 -0.02 3.76 15 15 C 0.04 1.86 3.54 85.38 0.30 2.16 15 16 N -0.79 -33.70 11.31 21.89 0.25 -33.45 15 17 Si 0.97 32.24 29.60 68.60 2.03 34.27 15 18 H -0.25 -7.77 7.11 99.48 0.71 -7.07 15 19 H -0.26 -8.03 7.11 99.48 0.71 -7.32 15 20 H -0.28 -9.82 7.11 99.48 0.71 -9.11 15 21 H 0.14 3.89 8.10 -2.38 -0.02 3.87 15 22 H 0.14 4.57 8.06 -2.91 -0.02 4.55 15 23 H 0.40 11.25 8.85 -92.71 -0.82 10.43 15 24 H 0.40 14.30 5.68 -92.71 -0.53 13.78 15 25 H 0.30 11.48 8.30 -92.70 -0.77 10.71 15 Total: -1.00 -52.82 245.68 5.00 -47.82 By element: Atomic # 1 Polarization: 23.66 SS G_CDS: -0.06 Total: 23.59 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: 3.06 Total: 15.03 kcal Atomic # 7 Polarization: -107.42 SS G_CDS: -1.58 Total: -109.00 kcal Atomic # 9 Polarization: -13.26 SS G_CDS: 1.55 Total: -11.71 kcal Atomic # 14 Polarization: 32.24 SS G_CDS: 2.03 Total: 34.27 kcal Total: -52.82 5.00 -47.82 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238636889.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.450 kcal (2) G-P(sol) polarization free energy of solvation -52.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds