Wall clock time and date at job start Mon Mar 30 2020 03:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39676 * 120.80180 * 115.70041 * 3 2 1 5 5 C 1.40428 * 118.98171 * 180.29850 * 4 3 2 6 6 C 1.41322 * 119.71541 * 179.70245 * 5 4 3 7 7 H 1.07997 * 120.00080 * 359.97438 * 6 5 4 8 8 C 1.40047 * 119.99811 * 180.02562 * 6 5 4 9 9 N 1.30728 * 120.00156 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99713 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47304 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47278 * 119.99606 * 10 8 6 13 13 H 1.48500 * 109.47310 * 239.99643 * 10 8 6 14 14 N 1.33710 * 120.56836 * 359.44993 * 5 4 3 15 15 C 1.31936 * 121.75788 * 0.54541 * 14 5 4 16 16 N 1.38853 * 119.51612 * 179.72400 * 15 14 5 17 17 C 1.39642 * 120.97307 * 359.74317 * 15 14 5 18 18 C 1.50700 * 120.33869 * 179.97438 * 17 15 14 19 19 F 1.39902 * 109.47002 * 300.02076 * 18 17 15 20 20 F 1.39900 * 109.47244 * 60.02687 * 18 17 15 21 21 H 1.08002 * 120.50590 * 0.02562 * 4 3 2 22 22 H 0.97005 * 120.00171 * 179.97438 * 9 8 6 23 23 H 0.96999 * 120.00275 * 180.02562 * 16 15 14 24 24 H 0.96995 * 120.00059 * 0.02562 * 16 15 14 25 25 H 1.09008 * 109.47085 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2831 0.5212 -1.0811 5 6 4.6866 0.4968 -1.0436 6 6 5.4255 1.0136 -2.1318 7 1 4.9106 1.4247 -2.9875 8 6 6.8255 0.9917 -2.1010 9 7 7.4488 0.4936 -1.0654 10 14 7.8021 1.6742 -3.5396 11 1 6.8675 2.1752 -4.5792 12 1 8.6632 2.7888 -3.0690 13 1 8.6521 0.6009 -4.1146 14 7 5.3300 -0.0068 0.0148 15 6 4.6807 -0.5047 1.0498 16 7 5.3959 -1.0210 2.1221 17 6 3.2847 -0.5206 1.0825 18 6 2.5577 -1.0934 2.2718 19 9 2.9108 -2.4377 2.4310 20 9 2.9098 -0.3792 3.4220 21 1 2.7644 0.9322 -1.9346 22 1 8.4185 0.4781 -1.0442 23 1 4.9257 -1.3892 2.8865 24 1 6.3657 -1.0135 2.1069 25 1 1.4822 -1.0168 2.1116 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238644755.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:24 Heat of formation + Delta-G solvation = -59.282018 kcal Electronic energy + Delta-G solvation = -16371.239884 eV Core-core repulsion = 13212.579828 eV Total energy + Delta-G solvation = -3158.660056 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 239.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.89165 -47.83353 -40.45449 -37.80698 -36.15458 -34.79147 -33.17670 -30.64518 -28.97420 -25.67528 -24.84082 -22.58839 -20.51450 -19.31119 -18.10942 -18.09633 -17.82258 -17.05290 -16.81777 -16.16283 -15.57152 -15.17610 -14.91948 -14.74977 -14.43892 -14.25803 -14.10669 -14.02871 -13.80726 -13.17353 -12.93176 -12.79008 -12.64372 -11.94441 -11.75451 -11.65988 -10.98325 -10.10750 -9.67245 -8.64088 -8.36923 -6.66104 0.11657 0.91460 1.48450 1.51287 1.57656 1.64510 2.22419 2.24893 2.76259 2.81295 2.93137 3.15175 3.49293 3.78636 3.81893 4.29352 4.62265 4.70140 4.94624 5.19099 5.27374 5.35919 5.67601 6.12123 6.32615 6.46646 6.67075 6.87650 7.04820 8.18112 8.36985 Molecular weight = 239.06amu Principal moments of inertia in cm(-1) A = 0.031136 B = 0.008047 C = 0.006660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.056667 B = 3478.860362 C = 4203.398566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.283 3.717 3 C 0.081 3.919 4 C -0.248 4.248 5 C 0.261 3.739 6 C -0.424 4.424 7 H 0.107 0.893 8 C 0.024 3.976 9 N -0.728 5.728 10 Si 0.989 3.011 11 H -0.250 1.250 12 H -0.269 1.269 13 H -0.269 1.269 14 N -0.557 5.557 15 C 0.449 3.551 16 N -0.845 5.845 17 C -0.405 4.405 18 C 0.339 3.661 19 F -0.210 7.210 20 F -0.210 7.210 21 H 0.131 0.869 22 H 0.284 0.716 23 H 0.402 0.598 24 H 0.403 0.597 25 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.072 -0.741 1.522 1.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.031 4.031 3 C 0.072 3.928 4 C -0.274 4.274 5 C 0.135 3.865 6 C -0.455 4.455 7 H 0.125 0.875 8 C -0.201 4.201 9 N -0.348 5.348 10 Si 0.809 3.191 11 H -0.173 1.173 12 H -0.194 1.194 13 H -0.194 1.194 14 N -0.281 5.281 15 C 0.203 3.797 16 N -0.390 5.390 17 C -0.416 4.416 18 C 0.285 3.715 19 F -0.191 7.191 20 F -0.191 7.191 21 H 0.149 0.851 22 H 0.095 0.905 23 H 0.233 0.767 24 H 0.233 0.767 25 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.780 -0.785 1.620 1.962 hybrid contribution 0.243 -0.022 0.037 0.247 sum -0.537 -0.807 1.657 1.920 Atomic orbital electron populations 1.81158 1.12024 1.09829 1.09212 1.25788 0.92548 0.92513 0.92254 1.15358 0.82942 0.99328 0.95196 1.21889 0.94806 1.11243 0.99490 1.18591 0.88614 0.88500 0.90763 1.20286 0.92170 1.31200 1.01860 0.87543 1.27014 0.99211 0.94280 0.99584 1.70187 1.10492 1.26312 1.27820 0.85037 0.78089 0.78390 0.77602 1.17329 1.19401 1.19409 1.68258 1.36938 1.21276 1.01621 1.18324 0.86370 0.86872 0.88097 1.42116 1.09436 1.68505 1.18947 1.19763 0.93524 1.27596 1.00739 1.19810 0.98269 0.72866 0.80552 1.92945 1.94126 1.35953 1.96114 1.92944 1.94148 1.78572 1.53470 0.85083 0.90484 0.76705 0.76749 0.87567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -16.58 18.54 19.01 0.35 -16.23 15 2 C 0.28 10.52 13.68 88.33 1.21 11.73 15 3 C 0.08 3.27 5.75 -21.28 -0.12 3.14 15 4 C -0.25 -10.64 9.57 23.15 0.22 -10.42 15 5 C 0.26 12.67 6.55 40.15 0.26 12.93 15 6 C -0.42 -19.71 9.13 23.47 0.21 -19.50 15 7 H 0.11 4.47 7.85 -2.91 -0.02 4.45 15 8 C 0.02 1.07 5.50 85.30 0.47 1.54 15 9 N -0.73 -34.28 11.45 21.84 0.25 -34.03 15 10 Si 0.99 33.04 29.56 68.60 2.03 35.06 15 11 H -0.25 -7.97 7.11 99.48 0.71 -7.27 15 12 H -0.27 -8.84 7.11 99.48 0.71 -8.13 15 13 H -0.27 -8.84 7.11 99.48 0.71 -8.13 15 14 N -0.56 -27.57 7.85 -186.80 -1.47 -29.04 15 15 C 0.45 19.92 7.65 133.38 1.02 20.94 15 16 N -0.84 -31.47 8.83 -55.46 -0.49 -31.95 15 17 C -0.40 -16.61 5.46 -19.12 -0.10 -16.71 15 18 C 0.34 11.95 4.81 71.24 0.34 12.30 15 19 F -0.21 -7.35 16.27 44.97 0.73 -6.62 15 20 F -0.21 -7.35 16.27 44.97 0.73 -6.62 15 21 H 0.13 5.04 8.06 -2.91 -0.02 5.01 15 22 H 0.28 12.01 8.29 -92.70 -0.77 11.24 15 23 H 0.40 13.43 6.21 -92.71 -0.58 12.86 15 24 H 0.40 14.33 8.95 -92.71 -0.83 13.50 15 25 H 0.11 3.43 6.54 -2.38 -0.02 3.41 15 Total: -1.00 -52.07 244.10 5.53 -46.53 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: -0.12 Total: 26.94 kcal Atomic # 6 Polarization: 12.42 SS G_CDS: 3.51 Total: 15.94 kcal Atomic # 7 Polarization: -109.89 SS G_CDS: -1.35 Total: -111.25 kcal Atomic # 9 Polarization: -14.70 SS G_CDS: 1.46 Total: -13.24 kcal Atomic # 14 Polarization: 33.04 SS G_CDS: 2.03 Total: 35.06 kcal Total: -52.07 5.53 -46.53 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238644755.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.747 kcal (2) G-P(sol) polarization free energy of solvation -52.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds