Wall clock time and date at job start Mon Mar 30 2020 03:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.40783 * 120.73739 * 35.28918 * 3 2 1 5 5 N 1.38619 * 120.87138 * 0.02562 * 4 3 2 6 6 C 1.39423 * 118.25328 * 180.28792 * 4 3 2 7 7 C 1.50697 * 120.17955 * 179.75577 * 6 4 3 8 8 F 1.39901 * 109.47040 * 200.77300 * 7 6 4 9 9 F 1.39903 * 109.46910 * 320.77037 * 7 6 4 10 10 C 1.38581 * 119.63891 * 359.72591 * 6 4 3 11 11 N 1.31458 * 121.51616 * 0.02562 * 10 6 4 12 12 C 1.33637 * 121.89520 * 359.97438 * 11 10 6 13 13 C 1.40871 * 119.91547 * 180.02562 * 12 11 10 14 14 H 1.08003 * 119.99766 * 180.02562 * 13 12 11 15 15 C 1.40279 * 119.99948 * 359.97438 * 13 12 11 16 16 N 1.30600 * 120.00323 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99877 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47003 * 179.97438 * 17 15 13 19 19 H 1.48498 * 109.47187 * 300.00206 * 17 15 13 20 20 H 1.48497 * 109.47349 * 59.99915 * 17 15 13 21 21 H 0.96997 * 119.99790 * 351.91366 * 5 4 3 22 22 H 0.96998 * 119.99986 * 171.91959 * 5 4 3 23 23 H 1.09000 * 109.47487 * 80.76735 * 7 6 4 24 24 H 1.08003 * 119.24166 * 179.97438 * 10 6 4 25 25 H 0.97000 * 120.00197 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2880 -0.9867 -0.6991 5 7 2.6293 -1.9821 -1.4040 6 6 4.6809 -0.9404 -0.6591 7 6 5.4947 -1.9789 -1.3873 8 9 6.7825 -2.0282 -0.8429 9 9 4.8830 -3.2298 -1.2518 10 6 5.3130 0.0663 0.0533 11 7 4.6290 0.9855 0.6979 12 6 3.2928 0.9992 0.7006 13 6 2.6019 2.0045 1.4052 14 1 1.5219 2.0166 1.4086 15 6 3.3166 2.9893 2.1033 16 7 4.6225 2.9744 2.0995 17 14 2.4004 4.3220 3.0382 18 1 3.3778 5.2329 3.6864 19 1 1.5527 5.0947 2.0951 20 1 1.5424 3.6974 4.0769 21 1 1.6671 -2.0760 -1.3258 22 1 3.1307 -2.5847 -1.9753 23 1 5.5564 -1.7172 -2.4436 24 1 6.3922 0.0959 0.0803 25 1 5.1167 3.6555 2.5819 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238648138.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:31 Heat of formation + Delta-G solvation = -68.222770 kcal Electronic energy + Delta-G solvation = -16331.602746 eV Core-core repulsion = 13172.554989 eV Total energy + Delta-G solvation = -3159.047757 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 239.056 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.73138 -47.77075 -40.48578 -37.17331 -36.59230 -35.14866 -32.64089 -30.74646 -28.90566 -25.73865 -24.51724 -22.83718 -19.70286 -19.39652 -18.82708 -18.11313 -17.39245 -17.33981 -16.95570 -16.33888 -15.68044 -15.00476 -14.86720 -14.55282 -14.16630 -14.02288 -13.79728 -13.61845 -13.53209 -13.29449 -13.02096 -12.91448 -12.53835 -12.18996 -11.99273 -11.75794 -11.18491 -9.73242 -9.67539 -8.78456 -8.50913 -6.83666 0.44462 1.00427 1.38984 1.50309 1.51016 1.99778 2.15377 2.43003 2.70904 2.93942 3.17577 3.47131 3.75607 3.84717 4.06408 4.25905 4.37266 4.58493 4.91960 5.09148 5.28553 5.35944 5.70185 6.02947 6.28903 6.54686 6.69763 6.85093 6.98493 8.03911 8.21034 Molecular weight = 239.06amu Principal moments of inertia in cm(-1) A = 0.028820 B = 0.008552 C = 0.006669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.304857 B = 3273.311822 C = 4197.664416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C 0.311 3.689 3 C -0.314 4.314 4 C 0.357 3.643 5 N -0.850 5.850 6 C -0.435 4.435 7 C 0.346 3.654 8 F -0.212 7.212 9 F -0.216 7.216 10 C 0.207 3.793 11 N -0.531 5.531 12 C 0.286 3.714 13 C -0.420 4.420 14 H 0.080 0.920 15 C 0.030 3.970 16 N -0.710 5.710 17 Si 0.980 3.020 18 H -0.254 1.254 19 H -0.261 1.261 20 H -0.263 1.263 21 H 0.398 0.602 22 H 0.411 0.589 23 H 0.142 0.858 24 H 0.153 0.847 25 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.856 -3.903 -4.694 7.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.208 5.208 2 C 0.002 3.998 3 C -0.328 4.328 4 C 0.239 3.761 5 N -0.390 5.390 6 C -0.447 4.447 7 C 0.292 3.708 8 F -0.194 7.194 9 F -0.198 7.198 10 C 0.034 3.966 11 N -0.244 5.244 12 C 0.163 3.837 13 C -0.448 4.448 14 H 0.098 0.902 15 C -0.198 4.198 16 N -0.329 5.329 17 Si 0.800 3.200 18 H -0.177 1.177 19 H -0.185 1.185 20 H -0.188 1.188 21 H 0.226 0.774 22 H 0.245 0.755 23 H 0.159 0.841 24 H 0.170 0.830 25 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.713 -3.123 -4.104 5.828 hybrid contribution -0.521 -0.485 -0.073 0.716 sum 2.192 -3.608 -4.178 5.940 Atomic orbital electron populations 1.81038 1.12595 1.12273 1.14867 1.25508 0.92361 0.91140 0.90764 1.16409 0.84246 1.08447 1.23747 1.17130 0.90216 0.84262 0.84468 1.42493 1.10672 1.34843 1.51001 1.20255 0.91835 1.08934 1.23679 1.20123 0.74496 0.77569 0.98650 1.92909 1.40955 1.96462 1.89033 1.92851 1.83152 1.46271 1.97490 1.22679 1.00134 0.87063 0.86702 1.68839 1.06469 1.25588 1.23500 1.18502 0.88476 0.89099 0.87603 1.20076 0.94731 1.06885 1.23122 0.90209 1.26957 0.95746 1.00503 0.96564 1.70047 1.08201 1.28613 1.26036 0.85268 0.79061 0.77098 0.78588 1.17689 1.18539 1.18756 0.77400 0.75502 0.84055 0.83014 0.89542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -24.40 18.54 19.00 0.35 -24.05 15 2 C 0.31 14.26 12.83 88.33 1.13 15.40 15 3 C -0.31 -14.44 5.84 -20.51 -0.12 -14.56 15 4 C 0.36 13.83 6.70 38.98 0.26 14.09 15 5 N -0.85 -25.84 8.55 -50.54 -0.43 -26.28 15 6 C -0.44 -16.02 5.77 -19.50 -0.11 -16.13 15 7 C 0.35 9.75 5.28 71.24 0.38 10.12 15 8 F -0.21 -6.41 16.24 44.97 0.73 -5.68 15 9 F -0.22 -6.17 14.79 44.97 0.67 -5.51 15 10 C 0.21 8.61 10.54 84.83 0.89 9.51 15 11 N -0.53 -26.25 7.84 -188.63 -1.48 -27.73 15 12 C 0.29 14.53 6.58 40.42 0.27 14.80 15 13 C -0.42 -21.43 8.78 23.41 0.21 -21.22 15 14 H 0.08 4.07 6.88 -2.91 -0.02 4.05 15 15 C 0.03 1.40 5.50 85.37 0.47 1.87 15 16 N -0.71 -33.99 11.46 21.88 0.25 -33.74 15 17 Si 0.98 35.43 29.56 68.60 2.03 37.46 15 18 H -0.25 -8.33 7.11 99.48 0.71 -7.62 15 19 H -0.26 -9.39 7.11 99.48 0.71 -8.68 15 20 H -0.26 -9.55 7.11 99.48 0.71 -8.84 15 21 H 0.40 11.88 7.83 -92.71 -0.73 11.15 15 22 H 0.41 10.21 6.35 -92.71 -0.59 9.62 15 23 H 0.14 2.87 8.14 -2.39 -0.02 2.85 15 24 H 0.15 5.60 7.36 -2.91 -0.02 5.58 15 25 H 0.29 12.40 8.29 -92.71 -0.77 11.64 15 Total: -1.00 -57.35 240.95 5.47 -51.89 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -0.02 Total: 19.76 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: 3.37 Total: 13.87 kcal Atomic # 7 Polarization: -110.48 SS G_CDS: -1.31 Total: -111.78 kcal Atomic # 9 Polarization: -12.59 SS G_CDS: 1.40 Total: -11.19 kcal Atomic # 14 Polarization: 35.43 SS G_CDS: 2.03 Total: 37.46 kcal Total: -57.35 5.47 -51.89 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238648138.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.333 kcal (2) G-P(sol) polarization free energy of solvation -57.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds