Wall clock time and date at job start Mon Mar 30 2020 03:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.41215 * 120.43530 * 62.61409 * 3 2 1 5 5 N 1.38766 * 120.85679 * 359.74324 * 4 3 2 6 6 C 1.38788 * 118.28000 * 179.72190 * 4 3 2 7 7 C 1.40483 * 119.03471 * 0.02562 * 6 4 3 8 8 C 1.41139 * 119.61672 * 180.02562 * 7 6 4 9 9 H 1.08008 * 119.99748 * 359.97438 * 8 7 6 10 10 C 1.40188 * 120.00151 * 179.97438 * 8 7 6 11 11 N 1.30641 * 120.00338 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00118 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.47228 * 59.99865 * 12 10 8 14 14 H 1.48494 * 109.47476 * 179.97438 * 12 10 8 15 15 H 1.48504 * 109.47190 * 299.99875 * 12 10 8 16 16 N 1.33901 * 120.76749 * 359.97438 * 7 6 4 17 17 C 1.31109 * 121.89899 * 359.97438 * 16 7 6 18 18 C 1.50695 * 119.55935 * 180.02562 * 17 16 7 19 19 F 1.39896 * 109.47062 * 29.98148 * 18 17 16 20 20 F 1.39901 * 109.47238 * 149.98305 * 18 17 16 21 21 H 0.97004 * 120.00624 * 0.02562 * 5 4 3 22 22 H 0.97001 * 119.99945 * 180.02562 * 5 4 3 23 23 H 1.07998 * 120.48414 * 180.02562 * 6 4 3 24 24 H 0.96999 * 120.00645 * 179.97438 * 11 10 8 25 25 H 1.09006 * 109.47400 * 269.97914 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2836 -0.5591 -1.0811 5 7 2.6173 -1.1240 -2.1593 6 6 4.6705 -0.5292 -1.0375 7 6 5.3053 0.0521 0.0727 8 6 6.7151 0.0896 0.1295 9 1 7.2993 -0.3275 -0.6775 10 6 7.3570 0.6682 1.2334 11 7 6.6504 1.1731 2.2093 12 14 9.2228 0.7184 1.3082 13 1 9.7443 1.4844 0.1478 14 1 9.6501 1.3778 2.5682 15 1 9.7573 -0.6665 1.2677 16 7 4.5885 0.5719 1.0772 17 6 3.2775 0.5625 1.0701 18 6 2.5235 1.1629 2.2284 19 9 3.2768 2.2007 2.7875 20 9 1.2988 1.6664 1.7769 21 1 1.6475 -1.1375 -2.1773 22 1 3.1213 -1.5053 -2.8952 23 1 5.2531 -0.9467 -1.8453 24 1 7.0945 1.5731 2.9732 25 1 2.3452 0.3962 2.9825 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238656203.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:46 Heat of formation + Delta-G solvation = -61.795034 kcal Electronic energy + Delta-G solvation = -16468.076757 eV Core-core repulsion = 13309.307728 eV Total energy + Delta-G solvation = -3158.769029 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 239.056 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.86964 -47.86775 -40.47936 -37.34489 -36.17737 -35.34977 -32.67177 -30.38681 -28.48883 -27.39323 -23.73332 -22.62989 -19.73092 -19.44895 -18.67858 -18.37253 -17.83309 -17.54386 -16.62954 -15.96412 -15.41221 -15.05054 -14.81837 -14.66700 -14.42197 -14.34945 -13.87423 -13.62249 -13.25933 -13.06644 -12.88125 -12.77504 -12.71964 -12.19144 -12.06264 -11.71816 -11.10928 -9.78062 -9.70780 -8.70981 -8.42798 -6.65805 0.28940 1.16544 1.48683 1.54269 1.61035 1.98205 2.22889 2.32074 2.72405 2.89041 3.05564 3.29225 3.48649 3.69416 3.85075 4.15937 4.66282 4.81191 4.93078 5.17395 5.34566 5.46523 5.61628 6.11934 6.43347 6.67665 6.77200 6.84828 7.06632 7.91833 8.30139 Molecular weight = 239.06amu Principal moments of inertia in cm(-1) A = 0.028015 B = 0.009278 C = 0.007038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.208294 B = 3017.212168 C = 3977.615234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C 0.300 3.700 3 C -0.293 4.293 4 C 0.311 3.689 5 N -0.854 5.854 6 C -0.354 4.354 7 C 0.248 3.752 8 C -0.413 4.413 9 H 0.108 0.892 10 C 0.021 3.979 11 N -0.722 5.722 12 Si 0.990 3.010 13 H -0.258 1.258 14 H -0.272 1.272 15 H -0.254 1.254 16 N -0.494 5.494 17 C 0.150 3.850 18 C 0.321 3.679 19 F -0.195 7.195 20 F -0.206 7.206 21 H 0.396 0.604 22 H 0.412 0.588 23 H 0.129 0.871 24 H 0.288 0.712 25 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.878 -2.743 -1.916 3.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.188 5.188 2 C -0.010 4.010 3 C -0.310 4.310 4 C 0.198 3.802 5 N -0.393 5.393 6 C -0.382 4.382 7 C 0.128 3.872 8 C -0.441 4.441 9 H 0.126 0.874 10 C -0.205 4.205 11 N -0.341 5.341 12 Si 0.810 3.190 13 H -0.182 1.182 14 H -0.196 1.196 15 H -0.178 1.178 16 N -0.207 5.207 17 C -0.009 4.009 18 C 0.267 3.733 19 F -0.176 7.176 20 F -0.187 7.187 21 H 0.224 0.776 22 H 0.242 0.758 23 H 0.146 0.854 24 H 0.099 0.901 25 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.724 -2.239 -1.030 2.569 hybrid contribution 0.327 -0.195 -0.827 0.910 sum 1.051 -2.434 -1.857 3.237 Atomic orbital electron populations 1.81069 1.12374 1.15020 1.10302 1.25456 0.92227 0.90993 0.92330 1.15682 0.84024 1.28059 1.03239 1.17331 0.91025 0.86654 0.85208 1.42123 1.08994 1.66661 1.21556 1.21115 0.91336 1.21043 1.04747 1.18708 0.94227 0.87499 0.86769 1.20309 0.90460 1.29034 1.04259 0.87411 1.27152 1.06019 0.93101 0.94258 1.70131 1.39915 1.19163 1.04886 0.85114 0.74964 0.80010 0.78918 1.18184 1.19622 1.17838 1.68337 1.02998 1.21247 1.28157 1.21627 0.92461 0.94283 0.92519 1.20378 0.74600 0.85718 0.92638 1.92982 1.76851 1.61833 1.85964 1.92958 1.45496 1.89426 1.90864 0.77577 0.75752 0.85361 0.90083 0.83372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -21.25 18.38 19.00 0.35 -20.91 15 2 C 0.30 12.34 11.43 88.33 1.01 13.35 15 3 C -0.29 -12.45 5.78 -20.84 -0.12 -12.57 15 4 C 0.31 12.20 6.80 38.91 0.26 12.46 15 5 N -0.85 -25.35 8.99 -50.56 -0.45 -25.81 15 6 C -0.35 -14.88 9.69 22.95 0.22 -14.66 15 7 C 0.25 11.99 6.55 40.09 0.26 12.25 15 8 C -0.41 -19.05 9.12 23.46 0.21 -18.84 15 9 H 0.11 4.46 7.85 -2.91 -0.02 4.43 15 10 C 0.02 0.93 5.50 85.34 0.47 1.40 15 11 N -0.72 -34.53 11.44 21.86 0.25 -34.28 15 12 Si 0.99 32.74 29.56 68.60 2.03 34.77 15 13 H -0.26 -8.29 7.11 99.48 0.71 -7.58 15 14 H -0.27 -8.78 7.11 99.48 0.71 -8.07 15 15 H -0.25 -8.05 7.11 99.48 0.71 -7.34 15 16 N -0.49 -24.67 7.40 -176.51 -1.31 -25.98 15 17 C 0.15 6.79 6.62 43.13 0.29 7.08 15 18 C 0.32 12.91 5.53 71.23 0.39 13.30 15 19 F -0.20 -8.56 17.05 44.97 0.77 -7.79 15 20 F -0.21 -8.49 14.50 44.97 0.65 -7.84 15 21 H 0.40 11.25 7.79 -92.71 -0.72 10.53 15 22 H 0.41 9.66 8.85 -92.71 -0.82 8.84 15 23 H 0.13 4.75 8.06 -2.91 -0.02 4.73 15 24 H 0.29 12.51 8.29 -92.71 -0.77 11.74 15 25 H 0.15 4.88 8.14 -2.38 -0.02 4.86 15 Total: -1.00 -56.95 244.64 5.03 -51.92 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: -0.26 Total: 22.13 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: 3.00 Total: 13.78 kcal Atomic # 7 Polarization: -105.80 SS G_CDS: -1.16 Total: -106.96 kcal Atomic # 9 Polarization: -17.05 SS G_CDS: 1.42 Total: -15.63 kcal Atomic # 14 Polarization: 32.74 SS G_CDS: 2.03 Total: 34.77 kcal Total: -56.95 5.03 -51.92 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238656203.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.872 kcal (2) G-P(sol) polarization free energy of solvation -56.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds