Wall clock time and date at job start Mon Mar 30 2020 03:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31463 * 1 3 3 Si 1.86791 * 120.00085 * 2 1 4 4 H 1.48496 * 109.47274 * 269.99745 * 3 2 1 5 5 H 1.48503 * 109.47399 * 29.99659 * 3 2 1 6 6 H 1.48502 * 109.47601 * 149.99607 * 3 2 1 7 7 C 1.38890 * 119.99719 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00294 * 0.02562 * 7 2 1 9 9 N 1.37195 * 119.99565 * 179.97438 * 7 2 1 10 10 C 1.34776 * 119.99801 * 180.02562 * 9 7 2 11 11 O 1.21507 * 119.99950 * 0.02562 * 10 9 7 12 12 O 1.34660 * 119.99861 * 180.02562 * 10 9 7 13 13 C 1.45199 * 117.00115 * 180.02562 * 12 10 9 14 14 C 1.50698 * 109.47586 * 180.02562 * 13 12 10 15 15 C 1.38219 * 120.00966 * 359.97438 * 14 13 12 16 16 C 1.38227 * 120.02402 * 179.72409 * 15 14 13 17 17 C 1.38263 * 120.05156 * 0.30685 * 16 15 14 18 18 C 1.38177 * 120.02526 * 359.97438 * 17 16 15 19 19 C 1.38439 * 120.01637 * 180.29637 * 14 13 12 20 20 F 1.35105 * 120.02463 * 359.97438 * 19 14 13 21 21 H 0.96999 * 120.00112 * 0.02562 * 1 2 3 22 22 H 0.97000 * 120.00382 * 0.02562 * 9 7 2 23 23 H 1.08996 * 109.47548 * 59.99135 * 13 12 10 24 24 H 1.09005 * 109.46709 * 299.99429 * 13 12 10 25 25 H 1.08002 * 119.99072 * 0.02562 * 15 14 13 26 26 H 1.07999 * 119.97012 * 180.27779 * 16 15 14 27 27 H 1.08004 * 119.99046 * 179.97438 * 17 16 15 28 28 H 1.08000 * 120.01271 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3146 0.0000 0.0000 3 14 2.2486 1.6176 0.0000 4 1 2.4962 2.0463 -1.4000 5 1 1.4461 2.6527 0.7000 6 1 3.5462 1.4402 0.7001 7 6 2.0090 -1.2029 0.0005 8 1 1.4690 -2.1382 0.0005 9 7 3.3810 -1.2028 0.0000 10 6 4.0548 -2.3700 0.0000 11 8 3.4473 -3.4223 0.0000 12 8 5.4015 -2.3700 0.0000 13 6 6.0607 -3.6637 -0.0006 14 6 7.5547 -3.4663 0.0002 15 6 8.0833 -2.1892 0.0007 16 6 9.4536 -2.0078 0.0071 17 6 10.2970 -3.1034 0.0066 18 6 9.7709 -4.3810 0.0002 19 6 8.3983 -4.5640 -0.0064 20 9 7.8827 -5.8128 -0.0130 21 1 -0.4850 0.8400 -0.0004 22 1 3.8660 -0.3628 -0.0004 23 1 5.7678 -4.2204 -0.8907 24 1 5.7679 -4.2211 0.8893 25 1 7.4254 -1.3327 0.0010 26 1 9.8656 -1.0095 0.0120 27 1 11.3676 -2.9605 0.0112 28 1 10.4299 -5.2366 0.0003 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258630037.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:55 Heat of formation + Delta-G solvation = -119.132193 kcal Electronic energy + Delta-G solvation = -16084.369363 eV Core-core repulsion = 13014.281562 eV Total energy + Delta-G solvation = -3070.087801 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.98405 -41.37238 -39.94601 -37.78582 -36.14634 -33.95483 -33.09443 -31.50004 -28.15995 -26.67213 -23.88434 -22.72417 -22.05284 -21.00417 -19.12549 -18.45207 -17.88135 -17.63427 -17.07038 -16.78056 -16.66138 -16.24594 -15.10665 -15.00600 -14.90474 -14.87914 -14.28925 -14.17138 -13.62452 -13.28201 -13.01939 -12.51045 -12.42887 -12.06239 -12.01827 -11.95320 -11.67602 -11.41701 -10.42438 -9.94530 -9.66721 -8.46343 -6.13210 0.09884 0.23595 1.27126 1.34726 1.36567 1.49102 1.88245 2.20428 2.60208 3.07617 3.22893 3.34514 3.68028 3.93150 4.02106 4.14181 4.23320 4.38778 4.46959 4.87069 5.00785 5.12247 5.18612 5.41166 5.44090 5.52087 5.87344 5.91406 6.42302 6.67805 7.17794 7.77185 8.69677 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.040125 B = 0.005432 C = 0.004797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.655615 B = 5152.984020 C = 5835.486796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.003 4.003 3 Si 0.963 3.037 4 H -0.254 1.254 5 H -0.268 1.268 6 H -0.237 1.237 7 C -0.329 4.329 8 H 0.066 0.934 9 N -0.559 5.559 10 C 0.600 3.400 11 O -0.636 6.636 12 O -0.365 6.365 13 C 0.133 3.867 14 C -0.141 4.141 15 C -0.086 4.086 16 C -0.122 4.122 17 C -0.082 4.082 18 C -0.148 4.148 19 C 0.083 3.917 20 F -0.149 7.149 21 H 0.284 0.716 22 H 0.396 0.604 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.137 0.863 26 H 0.162 0.838 27 H 0.173 0.827 28 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.186 -0.020 0.025 24.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.203 4.203 3 Si 0.782 3.218 4 H -0.178 1.178 5 H -0.192 1.192 6 H -0.161 1.161 7 C -0.456 4.456 8 H 0.084 0.916 9 N -0.208 5.208 10 C 0.352 3.648 11 O -0.530 6.530 12 O -0.279 6.279 13 C 0.058 3.942 14 C -0.142 4.142 15 C -0.104 4.104 16 C -0.139 4.139 17 C -0.099 4.099 18 C -0.167 4.167 19 C 0.063 3.937 20 F -0.128 7.128 21 H 0.094 0.906 22 H 0.233 0.767 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.155 0.845 26 H 0.179 0.821 27 H 0.190 0.810 28 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 23.741 -0.490 0.026 23.746 hybrid contribution -0.716 0.167 0.000 0.735 sum 23.025 -0.323 0.026 23.028 Atomic orbital electron populations 1.69772 1.07774 1.29651 1.49168 1.25939 0.96450 1.02382 0.95520 0.85397 0.79352 0.76848 0.80202 1.17844 1.19233 1.16076 1.18894 0.78717 0.95818 1.52206 0.91582 1.40545 1.05649 1.04664 1.69923 1.17824 0.80484 0.84852 0.81613 1.90831 1.69396 1.32142 1.60678 1.86037 1.18481 1.34952 1.88405 1.21313 0.88426 0.81866 1.02614 1.19677 0.92499 0.94982 1.07053 1.21123 0.96859 0.95456 0.96938 1.21637 0.91934 1.01353 0.99014 1.21531 1.02131 0.90377 0.95902 1.21439 0.91496 1.00835 1.02923 1.17683 0.92931 0.77918 1.05126 1.91478 1.87903 1.39357 1.94082 0.90625 0.76708 0.90931 0.90950 0.84497 0.82068 0.80981 0.82085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.61 13.96 21.66 0.30 -54.31 15 2 C 0.00 -0.16 5.50 84.90 0.47 0.31 15 3 Si 0.96 38.61 27.73 68.60 1.90 40.51 15 4 H -0.25 -9.65 7.11 99.48 0.71 -8.94 15 5 H -0.27 -10.45 7.11 99.48 0.71 -9.75 15 6 H -0.24 -8.31 6.52 99.48 0.65 -7.66 15 7 C -0.33 -19.36 10.16 84.01 0.85 -18.51 15 8 H 0.07 4.55 7.39 -2.91 -0.02 4.53 15 9 N -0.56 -27.97 5.10 -432.96 -2.21 -30.18 15 10 C 0.60 29.99 8.70 129.79 1.13 31.12 15 11 O -0.64 -36.89 15.71 19.82 0.31 -36.58 15 12 O -0.36 -14.57 8.74 -55.70 -0.49 -15.06 15 13 C 0.13 4.69 5.44 71.24 0.39 5.08 15 14 C -0.14 -3.94 5.89 -19.82 -0.12 -4.06 15 15 C -0.09 -2.00 9.38 22.26 0.21 -1.79 15 16 C -0.12 -1.90 10.04 22.27 0.22 -1.68 15 17 C -0.08 -1.06 10.04 22.26 0.22 -0.83 15 18 C -0.15 -2.52 10.03 22.31 0.22 -2.30 15 19 C 0.08 2.05 7.25 22.38 0.16 2.21 15 20 F -0.15 -4.16 16.80 44.97 0.76 -3.40 15 21 H 0.28 15.22 8.31 -92.71 -0.77 14.45 15 22 H 0.40 16.81 5.87 -92.71 -0.54 16.26 15 23 H 0.07 2.66 8.14 -2.39 -0.02 2.64 15 24 H 0.07 2.65 8.14 -2.38 -0.02 2.63 15 25 H 0.14 3.31 6.99 -2.91 -0.02 3.29 15 26 H 0.16 1.52 8.06 -2.91 -0.02 1.50 15 27 H 0.17 0.88 8.06 -2.91 -0.02 0.86 15 28 H 0.16 1.88 8.06 -2.91 -0.02 1.85 15 Total: -1.00 -72.73 260.22 4.94 -67.79 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: 0.60 Total: 21.67 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 3.76 Total: 9.55 kcal Atomic # 7 Polarization: -82.58 SS G_CDS: -1.90 Total: -84.49 kcal Atomic # 8 Polarization: -51.46 SS G_CDS: -0.18 Total: -51.64 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.76 Total: -3.40 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 1.90 Total: 40.51 kcal Total: -72.73 4.94 -67.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258630037.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.337 kcal (2) G-P(sol) polarization free energy of solvation -72.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds