Wall clock time and date at job start Mon Mar 30 2020 03:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36927 * 120.00314 * 2 1 4 4 H 1.07997 * 120.00236 * 203.69999 * 3 2 1 5 5 C 1.38816 * 119.99952 * 23.71012 * 3 2 1 6 6 N 1.31619 * 119.99957 * 14.48022 * 5 3 2 7 7 Si 1.86804 * 119.99891 * 194.48284 * 5 3 2 8 8 H 1.48503 * 109.46875 * 59.99892 * 7 5 3 9 9 H 1.48496 * 109.46842 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47156 * 299.99824 * 7 5 3 11 11 C 1.46505 * 119.99611 * 180.02562 * 2 1 3 12 12 H 1.08994 * 110.27493 * 185.38060 * 11 2 1 13 13 C 1.54590 * 110.39498 * 307.53012 * 11 2 1 14 14 C 1.54942 * 102.92544 * 97.00066 * 13 11 2 15 15 N 1.48535 * 103.22381 * 37.41063 * 14 13 11 16 16 C 1.46894 * 111.00217 * 200.27753 * 15 14 13 17 17 C 1.54267 * 110.03563 * 299.37161 * 16 15 14 18 18 C 1.54967 * 104.16167 * 217.13564 * 17 16 15 19 19 C 1.54887 * 102.77715 * 37.88426 * 18 17 16 20 20 C 1.53874 * 110.03481 * 182.15105 * 16 15 14 21 21 C 1.47900 * 105.82391 * 320.79928 * 15 14 13 22 22 H 1.09008 * 109.47272 * 267.95329 * 1 2 3 23 23 H 1.08999 * 109.46902 * 27.95090 * 1 2 3 24 24 H 1.09005 * 109.47685 * 147.95042 * 1 2 3 25 25 H 0.97005 * 119.99634 * 180.02562 * 6 5 3 26 26 H 1.09000 * 110.72314 * 215.35837 * 13 11 2 27 27 H 1.09008 * 110.72391 * 338.64582 * 13 11 2 28 28 H 1.09006 * 110.66631 * 278.98356 * 14 13 11 29 29 H 1.08995 * 110.81274 * 155.91893 * 14 13 11 30 30 H 1.09007 * 110.01548 * 60.76031 * 16 15 14 31 31 H 1.09004 * 110.48320 * 335.78052 * 17 16 15 32 32 H 1.08994 * 110.48939 * 98.42290 * 17 16 15 33 33 H 1.09001 * 110.71354 * 279.57244 * 18 17 16 34 34 H 1.08999 * 110.92211 * 156.29329 * 18 17 16 35 35 H 1.09000 * 110.48773 * 203.41243 * 19 18 17 36 36 H 1.09000 * 110.59801 * 80.82031 * 19 18 17 37 37 H 1.09004 * 110.03205 * 238.57345 * 20 16 15 38 38 H 1.08999 * 110.03187 * 0.02562 * 20 16 15 39 39 H 1.08998 * 109.91377 * 265.97292 * 21 15 14 40 40 H 1.08994 * 110.08468 * 144.77312 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1614 1.2252 -0.3759 5 6 1.5435 2.3373 0.4834 6 7 0.4400 2.2508 1.1954 7 14 2.2941 4.0095 0.1233 8 1 2.3480 4.2219 -1.3455 9 1 1.4620 5.0700 0.7462 10 1 3.6687 4.0659 0.6824 11 6 2.1974 -1.2688 -0.0006 12 1 3.2678 -1.0871 0.0954 13 6 1.7023 -2.1772 1.1481 14 6 0.6819 -3.1046 0.4414 15 7 1.3044 -3.3460 -0.8855 16 6 0.3033 -3.7928 -1.8632 17 6 -0.3407 -5.1138 -1.3942 18 6 -0.5460 -5.9206 -2.7012 19 6 0.7245 -5.5781 -3.5183 20 6 0.9800 -4.0876 -3.2134 21 6 1.9025 -2.0556 -1.2911 22 1 -0.3634 -0.0367 1.0271 23 1 -0.3633 0.9078 -0.4817 24 1 -0.3634 -0.8710 -0.5453 25 1 0.0162 3.0555 1.5329 26 1 2.5264 -2.7567 1.5642 27 1 1.2142 -1.5869 1.9237 28 1 -0.2799 -2.6039 0.3296 29 1 0.5658 -4.0404 0.9879 30 1 -0.4630 -3.0278 -1.9888 31 1 0.3291 -5.6460 -0.7187 32 1 -1.2979 -4.9207 -0.9099 33 1 -1.4427 -5.5870 -3.2234 34 1 -0.5960 -6.9897 -2.4949 35 1 0.5441 -5.7240 -4.5833 36 1 1.5677 -6.1849 -3.1884 37 1 0.5416 -3.4662 -3.9943 38 1 2.0514 -3.8995 -3.1430 39 1 1.2003 -1.4999 -1.9125 40 1 2.8280 -2.2282 -1.8404 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259345661.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:28 Heat of formation + Delta-G solvation = 20.354787 kcal Electronic energy + Delta-G solvation = -18006.262025 eV Core-core repulsion = 15435.067990 eV Total energy + Delta-G solvation = -2571.194035 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 238.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.30304 -36.97407 -34.35764 -31.39226 -29.71409 -28.95037 -27.52160 -26.27382 -25.74186 -22.58385 -21.25329 -20.49572 -19.41030 -18.67790 -16.83404 -16.22805 -15.66582 -15.06320 -14.53706 -14.04171 -13.58395 -13.21645 -12.94792 -12.87382 -12.38972 -12.12680 -11.78728 -11.28327 -11.07347 -11.05577 -10.95983 -10.72167 -10.64106 -10.62873 -10.55988 -10.52448 -10.42400 -10.32460 -9.98413 -9.80290 -9.72332 -8.52036 -7.92053 -6.71430 -5.73332 -3.17050 3.39778 3.45097 3.46254 4.35351 4.53971 4.64943 4.74779 5.02862 5.36200 5.39457 5.49597 5.52169 5.56274 5.61978 5.69900 5.76140 5.82122 5.89190 5.94460 5.99464 6.09624 6.11353 6.21160 6.25508 6.34098 6.37563 6.38908 6.56267 6.64625 6.77068 6.91981 7.03506 7.31954 7.40662 7.57576 7.69711 7.81847 8.43238 9.25193 9.89286 10.39655 11.33391 Molecular weight = 238.17amu Principal moments of inertia in cm(-1) A = 0.044689 B = 0.005723 C = 0.005544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.404907 B = 4891.112615 C = 5049.447109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.166 3.834 2 N -0.591 5.591 3 C -0.256 4.256 4 H 0.067 0.933 5 C 0.003 3.997 6 N -0.907 5.907 7 Si 0.904 3.096 8 H -0.285 1.285 9 H -0.291 1.291 10 H -0.283 1.283 11 C 0.168 3.832 12 H 0.070 0.930 13 C -0.139 4.139 14 C 0.039 3.961 15 N -0.512 5.512 16 C 0.072 3.928 17 C -0.116 4.116 18 C -0.123 4.123 19 C -0.119 4.119 20 C -0.117 4.117 21 C 0.021 3.979 22 H 0.020 0.980 23 H 0.048 0.952 24 H -0.007 1.007 25 H 0.253 0.747 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.044 0.956 29 H 0.067 0.933 30 H 0.040 0.960 31 H 0.075 0.925 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.049 0.951 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.128 -13.887 -5.911 15.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.313 5.313 3 C -0.386 4.386 4 H 0.085 0.915 5 C -0.196 4.196 6 N -0.552 5.552 7 Si 0.734 3.266 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.209 1.209 11 C 0.059 3.941 12 H 0.088 0.912 13 C -0.179 4.179 14 C -0.089 4.089 15 N -0.237 5.237 16 C -0.037 4.037 17 C -0.154 4.154 18 C -0.161 4.161 19 C -0.157 4.157 20 C -0.155 4.155 21 C -0.109 4.109 22 H 0.038 0.962 23 H 0.067 0.933 24 H 0.011 0.989 25 H 0.063 0.937 26 H 0.079 0.921 27 H 0.094 0.906 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.058 0.942 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.851 -14.117 -5.813 15.291 hybrid contribution -0.383 1.651 -0.187 1.705 sum -1.233 -12.466 -6.001 13.890 Atomic orbital electron populations 1.20698 0.83026 0.96270 0.97870 1.43986 1.01593 1.00256 1.85418 1.19192 0.98845 0.85619 1.34952 0.91484 1.25012 0.98177 0.98538 0.97847 1.70068 1.20950 1.27430 1.36728 0.86345 0.78416 0.83880 0.77957 1.21119 1.21676 1.20898 1.21157 0.96146 0.86064 0.90756 0.91223 1.22997 0.98185 0.97376 0.99354 1.23171 0.96955 0.98383 0.90394 1.64917 1.28322 1.28343 1.02083 1.22434 0.92801 0.96139 0.92350 1.22425 0.99947 0.95571 0.97428 1.22467 0.97906 0.99458 0.96303 1.22295 0.97791 0.96430 0.99173 1.22171 1.01650 0.95925 0.95724 1.23532 0.98960 0.88745 0.99667 0.96200 0.93339 0.98873 0.93726 0.92074 0.90622 0.93771 0.91485 0.94156 0.90618 0.92206 0.91872 0.91839 0.92231 0.91630 0.92302 0.90784 0.93304 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.14 7.48 59.85 0.45 4.59 16 2 N -0.59 -14.91 2.76 -171.93 -0.47 -15.39 16 3 C -0.26 -7.10 9.57 -15.06 -0.14 -7.25 16 4 H 0.07 1.81 7.87 -52.49 -0.41 1.40 16 5 C 0.00 0.07 5.01 -17.43 -0.09 -0.01 16 6 N -0.91 -26.65 10.89 55.49 0.60 -26.05 16 7 Si 0.90 21.97 29.58 -169.99 -5.03 16.95 16 8 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 9 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 C 0.17 3.55 3.51 -66.57 -0.23 3.31 16 12 H 0.07 1.49 7.93 -51.93 -0.41 1.08 16 13 C -0.14 -2.64 6.29 -24.87 -0.16 -2.79 16 14 C 0.04 0.65 5.34 -1.89 -0.01 0.64 16 15 N -0.51 -8.41 4.99 -221.16 -1.10 -9.51 16 16 C 0.07 1.05 2.34 -66.60 -0.16 0.89 16 17 C -0.12 -1.43 5.61 -25.03 -0.14 -1.57 16 18 C -0.12 -1.28 6.91 -24.70 -0.17 -1.45 16 19 C -0.12 -1.28 6.83 -25.07 -0.17 -1.45 16 20 C -0.12 -1.51 6.12 -25.61 -0.16 -1.67 16 21 C 0.02 0.38 5.07 -2.75 -0.01 0.37 16 22 H 0.02 0.53 7.69 -51.92 -0.40 0.13 16 23 H 0.05 1.32 6.95 -51.93 -0.36 0.95 16 24 H -0.01 -0.16 5.50 -51.93 -0.29 -0.45 16 25 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.08 1.61 7.84 -51.92 -0.41 1.20 16 28 H 0.04 0.80 6.30 -51.93 -0.33 0.48 16 29 H 0.07 1.01 7.90 -51.93 -0.41 0.60 16 30 H 0.04 0.65 8.01 -51.93 -0.42 0.24 16 31 H 0.08 0.96 7.90 -51.93 -0.41 0.55 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 1.02 7.20 -51.93 -0.37 0.65 16 39 H 0.05 0.99 6.74 -51.93 -0.35 0.64 16 40 H 0.07 1.15 7.86 -51.93 -0.41 0.75 16 LS Contribution 300.62 15.07 4.53 4.53 Total: -1.00 -28.74 300.62 -9.53 -38.27 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -7.07 Total: -2.41 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: -0.99 Total: -6.39 kcal Atomic # 7 Polarization: -49.97 SS G_CDS: -0.97 Total: -50.94 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.74 -9.53 -38.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259345661.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.626 kcal (2) G-P(sol) polarization free energy of solvation -28.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds