Wall clock time and date at job start Mon Mar 30 2020 03:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36927 * 120.00314 * 2 1 4 4 H 1.07997 * 120.00236 * 203.69999 * 3 2 1 5 5 C 1.38816 * 119.99952 * 23.71012 * 3 2 1 6 6 N 1.31619 * 119.99957 * 14.48022 * 5 3 2 7 7 Si 1.86804 * 119.99891 * 194.48284 * 5 3 2 8 8 H 1.48503 * 109.46875 * 59.99892 * 7 5 3 9 9 H 1.48496 * 109.46842 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47156 * 299.99824 * 7 5 3 11 11 C 1.46505 * 119.99611 * 180.02562 * 2 1 3 12 12 H 1.08994 * 110.27493 * 185.38060 * 11 2 1 13 13 C 1.54590 * 110.39498 * 307.53012 * 11 2 1 14 14 C 1.54942 * 102.92544 * 97.00066 * 13 11 2 15 15 N 1.48535 * 103.22381 * 37.41063 * 14 13 11 16 16 C 1.46894 * 111.00217 * 200.27753 * 15 14 13 17 17 C 1.54267 * 110.03563 * 299.37161 * 16 15 14 18 18 C 1.54967 * 104.16167 * 217.13564 * 17 16 15 19 19 C 1.54887 * 102.77715 * 37.88426 * 18 17 16 20 20 C 1.53874 * 110.03481 * 182.15105 * 16 15 14 21 21 C 1.47900 * 105.82391 * 320.79928 * 15 14 13 22 22 H 1.09008 * 109.47272 * 267.95329 * 1 2 3 23 23 H 1.08999 * 109.46902 * 27.95090 * 1 2 3 24 24 H 1.09005 * 109.47685 * 147.95042 * 1 2 3 25 25 H 0.97005 * 119.99634 * 180.02562 * 6 5 3 26 26 H 1.09000 * 110.72314 * 215.35837 * 13 11 2 27 27 H 1.09008 * 110.72391 * 338.64582 * 13 11 2 28 28 H 1.09006 * 110.66631 * 278.98356 * 14 13 11 29 29 H 1.08995 * 110.81274 * 155.91893 * 14 13 11 30 30 H 1.09007 * 110.01548 * 60.76031 * 16 15 14 31 31 H 1.09004 * 110.48320 * 335.78052 * 17 16 15 32 32 H 1.08994 * 110.48939 * 98.42290 * 17 16 15 33 33 H 1.09001 * 110.71354 * 279.57244 * 18 17 16 34 34 H 1.08999 * 110.92211 * 156.29329 * 18 17 16 35 35 H 1.09000 * 110.48773 * 203.41243 * 19 18 17 36 36 H 1.09000 * 110.59801 * 80.82031 * 19 18 17 37 37 H 1.09004 * 110.03205 * 238.57345 * 20 16 15 38 38 H 1.08999 * 110.03187 * 0.02562 * 20 16 15 39 39 H 1.08998 * 109.91377 * 265.97292 * 21 15 14 40 40 H 1.08994 * 110.08468 * 144.77312 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1614 1.2252 -0.3759 5 6 1.5435 2.3373 0.4834 6 7 0.4400 2.2508 1.1954 7 14 2.2941 4.0095 0.1233 8 1 2.3480 4.2219 -1.3455 9 1 1.4620 5.0700 0.7462 10 1 3.6687 4.0659 0.6824 11 6 2.1974 -1.2688 -0.0006 12 1 3.2678 -1.0871 0.0954 13 6 1.7023 -2.1772 1.1481 14 6 0.6819 -3.1046 0.4414 15 7 1.3044 -3.3460 -0.8855 16 6 0.3033 -3.7928 -1.8632 17 6 -0.3407 -5.1138 -1.3942 18 6 -0.5460 -5.9206 -2.7012 19 6 0.7245 -5.5781 -3.5183 20 6 0.9800 -4.0876 -3.2134 21 6 1.9025 -2.0556 -1.2911 22 1 -0.3634 -0.0367 1.0271 23 1 -0.3633 0.9078 -0.4817 24 1 -0.3634 -0.8710 -0.5453 25 1 0.0162 3.0555 1.5329 26 1 2.5264 -2.7567 1.5642 27 1 1.2142 -1.5869 1.9237 28 1 -0.2799 -2.6039 0.3296 29 1 0.5658 -4.0404 0.9879 30 1 -0.4630 -3.0278 -1.9888 31 1 0.3291 -5.6460 -0.7187 32 1 -1.2979 -4.9207 -0.9099 33 1 -1.4427 -5.5870 -3.2234 34 1 -0.5960 -6.9897 -2.4949 35 1 0.5441 -5.7240 -4.5833 36 1 1.5677 -6.1849 -3.1884 37 1 0.5416 -3.4662 -3.9943 38 1 2.0514 -3.8995 -3.1430 39 1 1.2003 -1.4999 -1.9125 40 1 2.8280 -2.2282 -1.8404 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259345661.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:28 Heat of formation + Delta-G solvation = 3.477117 kcal Electronic energy + Delta-G solvation = -18006.993896 eV Core-core repulsion = 15435.067990 eV Total energy + Delta-G solvation = -2571.925906 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 238.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.66647 -38.31252 -36.11786 -33.22674 -31.25267 -30.19273 -28.90477 -27.96748 -27.36748 -24.47755 -22.59942 -21.56517 -20.73347 -20.16906 -18.87116 -17.49088 -17.18632 -16.50309 -16.15532 -15.35213 -15.25948 -14.74527 -14.41146 -14.21685 -14.01896 -13.66663 -13.29744 -13.01434 -12.89183 -12.56933 -12.38795 -12.24971 -12.07285 -12.06120 -11.88763 -11.81171 -11.75487 -11.65529 -11.58155 -11.43562 -11.33113 -10.63246 -9.34345 -8.77780 -7.87296 -5.33575 1.45410 1.47960 1.54596 2.48811 3.04686 3.27262 3.63014 3.70454 3.79632 3.85305 4.11328 4.15816 4.34607 4.45359 4.50130 4.61297 4.63501 4.67205 4.70433 4.80598 4.86049 4.88162 4.99673 5.02097 5.11140 5.14789 5.18449 5.22030 5.24681 5.35794 5.36536 5.38066 5.52843 5.59256 5.63028 5.94828 6.25723 6.33195 7.12462 7.84751 8.30537 9.18036 Molecular weight = 238.17amu Principal moments of inertia in cm(-1) A = 0.044689 B = 0.005723 C = 0.005544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.404907 B = 4891.112615 C = 5049.447109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.190 3.810 2 N -0.605 5.605 3 C -0.268 4.268 4 H 0.071 0.929 5 C -0.051 4.051 6 N -0.939 5.939 7 Si 0.970 3.030 8 H -0.279 1.279 9 H -0.294 1.294 10 H -0.274 1.274 11 C 0.157 3.843 12 H 0.065 0.935 13 C -0.132 4.132 14 C 0.047 3.953 15 N -0.503 5.503 16 C 0.066 3.934 17 C -0.113 4.113 18 C -0.118 4.118 19 C -0.114 4.114 20 C -0.117 4.117 21 C 0.035 3.965 22 H -0.004 1.004 23 H 0.019 0.981 24 H 0.015 0.985 25 H 0.249 0.751 26 H 0.082 0.918 27 H 0.048 0.952 28 H 0.028 0.972 29 H 0.093 0.907 30 H 0.020 0.980 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.028 0.972 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.536 -15.612 -6.834 17.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.328 5.328 3 C -0.398 4.398 4 H 0.088 0.912 5 C -0.246 4.246 6 N -0.585 5.585 7 Si 0.798 3.202 8 H -0.205 1.205 9 H -0.220 1.220 10 H -0.199 1.199 11 C 0.049 3.951 12 H 0.083 0.917 13 C -0.172 4.172 14 C -0.081 4.081 15 N -0.228 5.228 16 C -0.043 4.043 17 C -0.150 4.150 18 C -0.155 4.155 19 C -0.152 4.152 20 C -0.155 4.155 21 C -0.095 4.095 22 H 0.014 0.986 23 H 0.037 0.963 24 H 0.033 0.967 25 H 0.058 0.942 26 H 0.101 0.899 27 H 0.066 0.934 28 H 0.046 0.954 29 H 0.111 0.889 30 H 0.038 0.962 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.046 0.954 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.238 -15.880 -6.750 17.257 hybrid contribution -0.545 2.135 0.092 2.206 sum -0.783 -13.745 -6.658 15.293 Atomic orbital electron populations 1.20333 0.83307 0.95633 0.96265 1.44170 1.01666 1.01252 1.85682 1.19549 0.99114 0.86833 1.34334 0.91163 1.25793 0.98845 1.01970 0.97995 1.70228 1.22392 1.27905 1.37992 0.85304 0.77771 0.79358 0.77787 1.20536 1.22034 1.19924 1.21387 0.95538 0.85171 0.92961 0.91680 1.22868 0.99175 0.97182 0.97955 1.23116 0.95398 0.98869 0.90701 1.65000 1.28961 1.26517 1.02284 1.22585 0.92065 0.96762 0.92906 1.22409 0.99714 0.94356 0.98568 1.22463 0.97889 1.00246 0.94950 1.22281 0.98120 0.94455 1.00295 1.22170 1.00781 0.97854 0.94680 1.23277 0.99210 0.89161 0.97819 0.98588 0.96254 0.96693 0.94236 0.89940 0.93360 0.95390 0.88858 0.96220 0.90566 0.92031 0.91387 0.89958 0.90663 0.91221 0.92365 0.91676 0.95365 0.90314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.75 7.48 127.77 0.96 10.71 16 2 N -0.61 -31.09 2.76 -697.86 -1.93 -33.02 16 3 C -0.27 -15.03 9.57 84.04 0.80 -14.23 16 4 H 0.07 3.81 7.87 -2.91 -0.02 3.78 16 5 C -0.05 -2.89 5.01 84.86 0.43 -2.47 16 6 N -0.94 -56.59 10.89 21.65 0.24 -56.36 16 7 Si 0.97 45.60 29.58 68.60 2.03 47.63 16 8 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 9 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 11 C 0.16 6.62 3.51 45.87 0.16 6.78 16 12 H 0.06 2.76 7.93 -2.39 -0.02 2.74 16 13 C -0.13 -4.92 6.29 31.80 0.20 -4.72 16 14 C 0.05 1.52 5.34 86.65 0.46 1.98 16 15 N -0.50 -15.76 4.99 -853.63 -4.26 -20.02 16 16 C 0.07 1.82 2.34 45.64 0.11 1.92 16 17 C -0.11 -2.49 5.61 31.70 0.18 -2.32 16 18 C -0.12 -2.07 6.91 31.91 0.22 -1.85 16 19 C -0.11 -2.10 6.83 31.67 0.22 -1.88 16 20 C -0.12 -2.81 6.12 31.32 0.19 -2.62 16 21 C 0.04 1.28 5.07 86.45 0.44 1.72 16 22 H 0.00 -0.23 7.69 -2.38 -0.02 -0.25 16 23 H 0.02 1.07 6.95 -2.39 -0.02 1.05 16 24 H 0.01 0.68 5.50 -2.38 -0.01 0.67 16 25 H 0.25 14.57 8.31 -92.70 -0.77 13.80 16 26 H 0.08 2.71 8.14 -2.39 -0.02 2.70 16 27 H 0.05 2.07 7.84 -2.38 -0.02 2.05 16 28 H 0.03 1.00 6.30 -2.38 -0.02 0.99 16 29 H 0.09 2.58 7.90 -2.39 -0.02 2.56 16 30 H 0.02 0.63 8.01 -2.38 -0.02 0.61 16 31 H 0.08 1.70 7.90 -2.38 -0.02 1.68 16 32 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.06 1.68 7.20 -2.39 -0.02 1.66 16 39 H 0.03 1.14 6.74 -2.39 -0.02 1.12 16 40 H 0.08 2.66 7.86 -2.39 -0.02 2.64 16 Total: -1.00 -61.89 300.62 1.42 -60.47 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: 0.98 Total: 8.27 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 4.36 Total: -6.98 kcal Atomic # 7 Polarization: -103.44 SS G_CDS: -5.95 Total: -109.39 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -61.89 1.42 -60.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259345661.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.949 kcal (2) G-P(sol) polarization free energy of solvation -61.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds