Wall clock time and date at job start Mon Mar 30 2020 03:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35939 * 117.00176 * 2 1 4 4 C 1.36373 * 119.93749 * 0.23453 * 3 2 1 5 5 C 1.41528 * 119.73799 * 180.27937 * 4 3 2 6 6 C 1.39699 * 120.18755 * 179.76090 * 5 4 3 7 7 H 1.07997 * 120.00073 * 25.18445 * 6 5 4 8 8 C 1.46568 * 119.99871 * 205.17951 * 6 5 4 9 9 N 1.29501 * 119.99867 * 12.85877 * 8 6 5 10 10 Si 1.86796 * 119.99961 * 192.85281 * 8 6 5 11 11 H 1.48502 * 109.46714 * 60.00567 * 10 8 6 12 12 H 1.48502 * 109.47167 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47725 * 300.00485 * 10 8 6 14 14 C 1.41691 * 119.62309 * 359.73599 * 5 4 3 15 15 C 1.36048 * 119.86998 * 0.02562 * 14 5 4 16 16 N 1.48003 * 119.86949 * 180.02562 * 15 14 5 17 17 O 1.31703 * 119.99869 * 359.97438 * 16 15 14 18 18 O 1.31697 * 120.00325 * 179.97438 * 16 15 14 19 19 C 1.39687 * 120.25916 * 0.02562 * 15 14 5 20 20 O 1.35314 * 119.80826 * 179.97438 * 19 15 14 21 21 H 1.09000 * 109.47355 * 300.00555 * 1 2 3 22 22 H 1.09003 * 109.46931 * 60.00930 * 1 2 3 23 23 H 1.09004 * 109.47452 * 179.97438 * 1 2 3 24 24 H 1.08004 * 120.12922 * 0.03845 * 4 3 2 25 25 H 0.97000 * 119.99705 * 179.97438 * 9 8 6 26 26 H 1.08001 * 120.06209 * 180.02562 * 14 5 4 27 27 H 0.96692 * 114.00606 * 89.99145 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.3022 2.3541 0.0048 5 6 1.9492 3.6129 -0.0012 6 6 1.1963 4.7896 -0.0013 7 1 0.1939 4.7894 0.4007 8 6 1.7667 6.0245 -0.5470 9 7 2.8545 5.9806 -1.2483 10 14 0.9246 7.6617 -0.2310 11 1 0.8612 7.9115 1.2314 12 1 1.6948 8.7492 -0.8865 13 1 -0.4518 7.6260 -0.7872 14 6 3.3648 3.6728 -0.0065 15 6 4.0916 2.5227 -0.0063 16 7 5.5703 2.5853 -0.0113 17 8 6.1800 3.7527 -0.0164 18 8 6.2765 1.4737 -0.0106 19 6 3.4478 1.2831 -0.0015 20 8 4.1797 0.1450 -0.0019 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 0.2236 2.2989 0.0093 25 1 3.2319 6.7979 -1.6098 26 1 3.8658 4.6296 -0.0107 27 1 4.3958 -0.1840 0.8813 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259364956.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:44 Heat of formation + Delta-G solvation = -43.510778 kcal Electronic energy + Delta-G solvation = -16877.000014 eV Core-core repulsion = 13797.818615 eV Total energy + Delta-G solvation = -3079.181400 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.067 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.64481 -38.10145 -36.60742 -36.06907 -33.72145 -33.35331 -30.55906 -29.33336 -27.05614 -25.69110 -24.76939 -21.52663 -20.87467 -18.73204 -17.59119 -17.31961 -16.53732 -15.89928 -15.68280 -15.38314 -15.04851 -14.90618 -14.26142 -13.49959 -13.35893 -12.47159 -12.17484 -11.70804 -11.56862 -11.48435 -11.03654 -10.92570 -10.60908 -10.45243 -10.36396 -10.27797 -9.78359 -9.75276 -9.51309 -8.35943 -7.50713 -7.46091 -4.93100 0.39298 2.13341 2.23527 2.49456 2.72946 2.77387 2.80228 3.44881 3.85566 3.89217 4.83211 5.16714 5.44170 5.52134 5.72786 5.99118 6.08997 6.16904 6.20611 6.36195 6.48148 6.81175 7.02389 7.22453 7.38234 7.68616 7.78735 7.93413 8.07678 8.17433 8.65498 9.41574 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.020203 B = 0.010121 C = 0.006871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.614529 B = 2765.728670 C = 4074.099167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.317 6.317 3 C 0.154 3.846 4 C -0.291 4.291 5 C 0.121 3.879 6 C -0.423 4.423 7 H 0.098 0.902 8 C 0.065 3.935 9 N -0.736 5.736 10 Si 0.931 3.069 11 H -0.255 1.255 12 H -0.270 1.270 13 H -0.257 1.257 14 C -0.121 4.121 15 C 0.044 3.956 16 N -0.002 5.002 17 O -0.211 6.211 18 O -0.180 6.180 19 C -0.049 4.049 20 O -0.464 6.464 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.090 0.910 24 H 0.120 0.880 25 H 0.303 0.697 26 H 0.155 0.845 27 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.218 -0.907 2.560 6.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.230 6.230 3 C 0.108 3.892 4 C -0.312 4.312 5 C 0.117 3.883 6 C -0.448 4.448 7 H 0.116 0.884 8 C -0.165 4.165 9 N -0.355 5.355 10 Si 0.753 3.247 11 H -0.179 1.179 12 H -0.195 1.195 13 H -0.181 1.181 14 C -0.142 4.142 15 C -0.043 4.043 16 N 0.472 4.528 17 O -0.398 6.398 18 O -0.376 6.376 19 C -0.097 4.097 20 O -0.270 6.270 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.108 0.892 24 H 0.138 0.862 25 H 0.116 0.884 26 H 0.173 0.827 27 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -6.600 -0.891 1.776 6.893 hybrid contribution -0.010 0.824 0.477 0.952 sum -6.610 -0.067 2.253 6.984 Atomic orbital electron populations 1.22923 0.79472 1.02648 1.01290 1.86011 1.20350 1.27401 1.89254 1.18370 0.90043 0.84175 0.96598 1.20906 0.98886 0.91449 1.19926 1.17128 0.89675 0.92364 0.89160 1.20805 1.01076 0.91193 1.31761 0.88385 1.27727 0.94159 1.02644 0.91923 1.69021 1.15671 1.33241 1.17577 0.85961 0.80210 0.77845 0.80665 1.17850 1.19458 1.18100 1.21343 0.94343 0.96622 1.01870 1.20178 0.74468 0.96155 1.13513 1.50553 1.05459 1.01869 0.94906 1.96202 1.74198 1.11854 1.57499 1.96184 1.66919 1.19200 1.55305 1.16543 0.86182 0.83790 1.23196 1.84851 1.72073 1.38613 1.31448 0.93046 0.92925 0.89160 0.86238 0.88355 0.82744 0.78888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.81 101.05 0.99 1.45 15 2 O -0.32 -6.19 10.28 -34.05 -0.35 -6.54 15 3 C 0.15 3.40 6.67 -39.46 -0.26 3.14 15 4 C -0.29 -6.32 8.75 -39.00 -0.34 -6.66 15 5 C 0.12 2.86 5.62 -106.78 -0.60 2.26 15 6 C -0.42 -9.44 9.29 -35.68 -0.33 -9.77 15 7 H 0.10 1.99 7.97 -52.49 -0.42 1.57 15 8 C 0.07 1.37 5.40 -15.18 -0.08 1.29 15 9 N -0.74 -16.55 10.84 55.99 0.61 -15.94 15 10 Si 0.93 15.45 29.66 -169.99 -5.04 10.41 15 11 H -0.25 -4.20 7.11 56.52 0.40 -3.80 15 12 H -0.27 -4.40 7.11 56.52 0.40 -4.00 15 13 H -0.26 -4.17 7.11 56.52 0.40 -3.77 15 14 C -0.12 -3.01 8.23 -39.05 -0.32 -3.33 15 15 C 0.04 1.10 6.86 -80.20 -0.55 0.55 15 16 N 0.00 -0.06 4.98 33.84 0.17 0.11 15 17 O -0.21 -5.41 19.11 -31.57 -0.60 -6.02 15 18 O -0.18 -4.47 17.88 -39.23 -0.70 -5.17 15 19 C -0.05 -1.16 6.75 -38.25 -0.26 -1.42 15 20 O -0.46 -10.43 11.15 -46.37 -0.52 -10.95 15 21 H 0.05 0.67 7.64 -51.93 -0.40 0.28 15 22 H 0.05 0.72 7.66 -51.93 -0.40 0.33 15 23 H 0.09 1.00 8.14 -51.93 -0.42 0.57 15 24 H 0.12 2.28 6.23 -52.48 -0.33 1.95 15 25 H 0.30 6.09 8.27 -40.82 -0.34 5.75 15 26 H 0.16 3.97 5.51 -52.49 -0.29 3.69 15 27 H 0.36 6.59 9.06 45.56 0.41 7.00 15 LS Contribution 253.04 15.07 3.81 3.81 Total: -1.00 -27.86 253.04 -5.35 -33.21 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -0.97 Total: 9.58 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: -1.76 Total: -12.49 kcal Atomic # 7 Polarization: -16.61 SS G_CDS: 0.78 Total: -15.84 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -2.17 Total: -28.68 kcal Atomic # 14 Polarization: 15.45 SS G_CDS: -5.04 Total: 10.41 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -27.86 -5.35 -33.21 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259364956.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.300 kcal (2) G-P(sol) polarization free energy of solvation -27.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds