Wall clock time and date at job start Mon Mar 30 2020 03:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35939 * 117.00176 * 2 1 4 4 C 1.36373 * 119.93749 * 0.23453 * 3 2 1 5 5 C 1.41528 * 119.73799 * 180.27937 * 4 3 2 6 6 C 1.39699 * 120.18755 * 179.76090 * 5 4 3 7 7 H 1.07997 * 120.00073 * 25.18445 * 6 5 4 8 8 C 1.46568 * 119.99871 * 205.17951 * 6 5 4 9 9 N 1.29501 * 119.99867 * 12.85877 * 8 6 5 10 10 Si 1.86796 * 119.99961 * 192.85281 * 8 6 5 11 11 H 1.48502 * 109.46714 * 60.00567 * 10 8 6 12 12 H 1.48502 * 109.47167 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47725 * 300.00485 * 10 8 6 14 14 C 1.41691 * 119.62309 * 359.73599 * 5 4 3 15 15 C 1.36048 * 119.86998 * 0.02562 * 14 5 4 16 16 N 1.48003 * 119.86949 * 180.02562 * 15 14 5 17 17 O 1.31703 * 119.99869 * 359.97438 * 16 15 14 18 18 O 1.31697 * 120.00325 * 179.97438 * 16 15 14 19 19 C 1.39687 * 120.25916 * 0.02562 * 15 14 5 20 20 O 1.35314 * 119.80826 * 179.97438 * 19 15 14 21 21 H 1.09000 * 109.47355 * 300.00555 * 1 2 3 22 22 H 1.09003 * 109.46931 * 60.00930 * 1 2 3 23 23 H 1.09004 * 109.47452 * 179.97438 * 1 2 3 24 24 H 1.08004 * 120.12922 * 0.03845 * 4 3 2 25 25 H 0.97000 * 119.99705 * 179.97438 * 9 8 6 26 26 H 1.08001 * 120.06209 * 180.02562 * 14 5 4 27 27 H 0.96692 * 114.00606 * 89.99145 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.3022 2.3541 0.0048 5 6 1.9492 3.6129 -0.0012 6 6 1.1963 4.7896 -0.0013 7 1 0.1939 4.7894 0.4007 8 6 1.7667 6.0245 -0.5470 9 7 2.8545 5.9806 -1.2483 10 14 0.9246 7.6617 -0.2310 11 1 0.8612 7.9115 1.2314 12 1 1.6948 8.7492 -0.8865 13 1 -0.4518 7.6260 -0.7872 14 6 3.3648 3.6728 -0.0065 15 6 4.0916 2.5227 -0.0063 16 7 5.5703 2.5853 -0.0113 17 8 6.1800 3.7527 -0.0164 18 8 6.2765 1.4737 -0.0106 19 6 3.4478 1.2831 -0.0015 20 8 4.1797 0.1450 -0.0019 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3634 -1.0277 -0.0005 24 1 0.2236 2.2989 0.0093 25 1 3.2319 6.7979 -1.6098 26 1 3.8658 4.6296 -0.0107 27 1 4.3958 -0.1840 0.8813 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259364956.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:44 Heat of formation + Delta-G solvation = -61.047390 kcal Electronic energy + Delta-G solvation = -16877.760459 eV Core-core repulsion = 13797.818615 eV Total energy + Delta-G solvation = -3079.941844 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.067 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.34850 -39.90044 -38.32845 -37.80347 -35.45053 -35.30213 -32.36771 -30.98185 -28.38148 -27.57901 -26.46999 -23.24200 -22.66607 -20.43501 -19.33428 -19.25599 -18.31345 -17.44418 -17.37147 -17.13673 -16.65671 -16.56354 -15.92945 -15.01532 -14.88726 -13.99604 -13.76591 -13.22718 -13.16430 -12.93409 -12.61636 -12.39233 -12.31827 -12.25729 -11.99232 -11.90445 -11.80425 -11.38479 -11.23464 -10.12807 -9.20809 -9.06732 -6.67173 -1.56075 0.24974 0.47422 0.69964 1.36759 1.45513 1.53792 2.06402 2.27155 2.41253 3.10497 3.45816 4.21378 4.26721 4.32117 4.42519 4.45214 4.52499 4.68948 4.75092 4.80358 5.04022 5.23000 5.49695 5.62477 5.87304 6.01552 6.27544 6.36533 6.52003 7.01310 7.83871 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.020203 B = 0.010121 C = 0.006871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.614529 B = 2765.728670 C = 4074.099167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.327 6.327 3 C 0.158 3.842 4 C -0.285 4.285 5 C 0.097 3.903 6 C -0.435 4.435 7 H 0.119 0.881 8 C 0.028 3.972 9 N -0.771 5.771 10 Si 1.005 2.995 11 H -0.251 1.251 12 H -0.267 1.267 13 H -0.245 1.245 14 C -0.145 4.145 15 C 0.029 3.971 16 N -0.003 5.003 17 O -0.243 6.243 18 O -0.168 6.168 19 C -0.066 4.066 20 O -0.472 6.472 21 H 0.064 0.936 22 H 0.057 0.943 23 H 0.125 0.875 24 H 0.148 0.852 25 H 0.311 0.689 26 H 0.138 0.862 27 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.554 -0.803 2.838 9.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.241 6.241 3 C 0.111 3.889 4 C -0.306 4.306 5 C 0.093 3.907 6 C -0.459 4.459 7 H 0.136 0.864 8 C -0.198 4.198 9 N -0.391 5.391 10 Si 0.823 3.177 11 H -0.175 1.175 12 H -0.191 1.191 13 H -0.168 1.168 14 C -0.166 4.166 15 C -0.058 4.058 16 N 0.469 4.531 17 O -0.422 6.422 18 O -0.369 6.369 19 C -0.115 4.115 20 O -0.281 6.281 21 H 0.083 0.917 22 H 0.076 0.924 23 H 0.143 0.857 24 H 0.166 0.834 25 H 0.125 0.875 26 H 0.156 0.844 27 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -8.926 -0.753 2.060 9.191 hybrid contribution 0.629 0.655 0.375 0.983 sum -8.297 -0.098 2.435 8.647 Atomic orbital electron populations 1.23340 0.76477 1.05384 1.02156 1.86005 1.23327 1.25998 1.88776 1.18355 0.89567 0.85316 0.95612 1.21173 1.00224 0.90555 1.18602 1.17474 0.89304 0.93920 0.90007 1.21298 1.01914 0.91558 1.31097 0.86365 1.28741 0.94359 1.05889 0.90836 1.69079 1.17003 1.34753 1.18229 0.84879 0.79393 0.72906 0.80545 1.17453 1.19142 1.16789 1.21286 0.95199 0.95902 1.04252 1.20490 0.73836 0.97057 1.14416 1.50715 1.05978 1.01701 0.94716 1.96192 1.74462 1.12056 1.59453 1.96144 1.67203 1.19204 1.54304 1.16759 0.87236 0.83533 1.23945 1.84773 1.72095 1.38135 1.33049 0.91703 0.92400 0.85661 0.83431 0.87546 0.84425 0.76944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 9.81 113.37 1.11 1.63 15 2 O -0.33 -12.06 10.28 -79.00 -0.81 -12.87 15 3 C 0.16 6.81 6.67 22.35 0.15 6.96 15 4 C -0.29 -11.96 8.75 22.65 0.20 -11.76 15 5 C 0.10 4.57 5.62 -21.26 -0.12 4.46 15 6 C -0.43 -18.89 9.29 24.80 0.23 -18.66 15 7 H 0.12 4.52 7.97 -2.91 -0.02 4.49 15 8 C 0.03 1.17 5.40 87.21 0.47 1.64 15 9 N -0.77 -34.98 10.84 23.22 0.25 -34.72 15 10 Si 1.01 30.06 29.66 68.60 2.03 32.09 15 11 H -0.25 -7.32 7.11 99.48 0.71 -6.62 15 12 H -0.27 -7.79 7.11 99.48 0.71 -7.08 15 13 H -0.24 -6.82 7.11 99.48 0.71 -6.11 15 14 C -0.15 -7.43 8.23 22.61 0.19 -7.24 15 15 C 0.03 1.50 6.86 36.22 0.25 1.75 15 16 N 0.00 -0.17 4.98 -46.85 -0.23 -0.41 15 17 O -0.24 -12.95 19.11 3.51 0.07 -12.88 15 18 O -0.17 -8.38 17.88 10.85 0.19 -8.19 15 19 C -0.07 -3.16 6.75 23.13 0.16 -3.00 15 20 O -0.47 -21.01 11.15 -58.54 -0.65 -21.66 15 21 H 0.06 1.46 7.64 -2.39 -0.02 1.44 15 22 H 0.06 1.40 7.66 -2.39 -0.02 1.38 15 23 H 0.13 2.25 8.14 -2.38 -0.02 2.23 15 24 H 0.15 5.20 6.23 -2.91 -0.02 5.18 15 25 H 0.31 12.60 8.27 -92.71 -0.77 11.84 15 26 H 0.14 7.40 5.51 -2.91 -0.02 7.39 15 27 H 0.38 13.55 9.06 -74.06 -0.67 12.88 15 Total: -1.00 -59.91 253.04 4.05 -55.86 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: 0.57 Total: 27.02 kcal Atomic # 6 Polarization: -26.87 SS G_CDS: 2.63 Total: -24.24 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: 0.02 Total: -35.13 kcal Atomic # 8 Polarization: -54.40 SS G_CDS: -1.20 Total: -55.60 kcal Atomic # 14 Polarization: 30.06 SS G_CDS: 2.03 Total: 32.09 kcal Total: -59.91 4.05 -55.86 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259364956.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.190 kcal (2) G-P(sol) polarization free energy of solvation -59.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds