Wall clock time and date at job start Mon Mar 30 2020 03:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00422 * 2 1 4 4 H 1.48496 * 109.47559 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47021 * 300.00182 * 3 2 1 6 6 H 1.48497 * 109.46958 * 60.00050 * 3 2 1 7 7 C 1.37880 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00038 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99965 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.44704 * 59.77785 * 9 7 2 11 11 C 1.55151 * 109.60448 * 299.54248 * 9 7 2 12 12 S 1.83991 * 100.90836 * 198.62762 * 11 9 7 13 13 C 1.83389 * 95.85007 * 35.35132 * 12 11 9 14 14 H 1.08999 * 110.43520 * 221.33106 * 13 12 11 15 15 C 1.50712 * 110.34052 * 99.12402 * 13 12 11 16 16 C 1.34511 * 125.78940 * 124.45220 * 15 13 12 17 17 C 1.41377 * 106.83818 * 180.02562 * 16 15 13 18 18 C 1.34515 * 106.84366 * 359.97438 * 17 16 15 19 19 O 1.34296 * 125.78462 * 304.14618 * 15 13 12 20 20 C 1.52937 * 109.60252 * 180.02562 * 9 7 2 21 21 H 1.09004 * 108.77838 * 29.31818 * 20 9 7 22 22 N 1.46905 * 108.88862 * 270.82763 * 20 9 7 23 23 H 0.97003 * 119.99649 * 359.97438 * 1 2 3 24 24 H 1.09000 * 111.12964 * 80.71782 * 11 9 7 25 25 H 1.08993 * 111.13343 * 316.54034 * 11 9 7 26 26 H 1.07995 * 126.57903 * 0.03793 * 16 15 13 27 27 H 1.07998 * 126.57824 * 180.02562 * 17 16 15 28 28 H 1.08000 * 125.79076 * 180.02562 * 18 17 16 29 29 H 1.00901 * 110.99869 * 175.56929 * 22 20 9 30 30 H 1.00896 * 110.99543 * 299.52052 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6211 -2.5546 -0.8884 11 6 0.3671 -2.5900 1.2713 12 16 0.0423 -4.3996 1.3412 13 6 1.6863 -4.9092 0.7082 14 1 1.5836 -5.7332 0.0021 15 6 2.5865 -5.3076 1.8494 16 6 3.2205 -6.4872 1.9763 17 6 3.9497 -6.4321 3.1862 18 6 3.7182 -5.2219 3.7261 19 8 2.8964 -4.5430 2.9090 20 6 2.2421 -3.6639 -0.0005 21 1 3.1548 -3.3480 0.5048 22 7 2.5656 -4.0131 -1.3903 23 1 -0.4850 0.8401 0.0004 24 1 -0.5592 -2.0290 1.1470 25 1 0.9121 -2.2542 2.1535 26 1 3.1802 -7.3170 1.2863 27 1 4.5736 -7.2117 3.5977 28 1 4.1276 -4.8565 4.6562 29 1 3.2732 -4.7315 -1.4273 30 1 1.7381 -4.2943 -1.8944 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259698880.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:17 Heat of formation + Delta-G solvation = 13.639641 kcal Electronic energy + Delta-G solvation = -15119.332163 eV Core-core repulsion = 12621.214957 eV Total energy + Delta-G solvation = -2498.117206 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.29208 -36.90162 -33.17185 -32.66400 -30.66774 -30.09135 -26.45129 -25.29653 -22.83514 -21.51130 -20.36317 -19.38912 -17.52901 -16.45752 -15.97359 -15.42911 -14.95985 -14.51942 -14.19378 -14.15261 -13.27261 -12.79646 -12.58922 -12.45419 -12.21642 -11.73212 -11.27302 -10.95806 -10.72975 -10.67463 -10.48227 -9.91626 -9.68966 -9.49597 -8.87139 -8.57997 -8.47053 -7.84054 -7.06679 -6.11460 -4.14218 1.79818 2.53707 2.97801 3.17337 3.26608 3.32193 3.36144 3.40582 4.37920 4.75761 5.06755 5.12744 5.20992 5.29052 5.38607 5.48748 5.93897 6.05531 6.09733 6.28899 6.54144 6.58894 6.62050 6.68838 7.23799 7.41670 7.51236 7.79340 7.86228 7.96730 8.22908 8.86750 9.49439 10.97110 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.028929 B = 0.008150 C = 0.007649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.652910 B = 3434.558628 C = 3659.719355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.496 4.496 8 H 0.062 0.938 9 C 0.059 3.941 10 H 0.049 0.951 11 C -0.019 4.019 12 S -0.349 6.349 13 C 0.001 3.999 14 H 0.116 0.884 15 C 0.026 3.974 16 C -0.220 4.220 17 C -0.216 4.216 18 C -0.045 4.045 19 O -0.157 6.157 20 C 0.101 3.899 21 H 0.084 0.916 22 N -0.824 5.824 23 H 0.262 0.738 24 H 0.117 0.883 25 H 0.073 0.927 26 H 0.143 0.857 27 H 0.144 0.856 28 H 0.199 0.801 29 H 0.328 0.672 30 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.171 -9.997 3.519 11.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.211 1.211 7 C -0.536 4.536 8 H 0.080 0.920 9 C 0.038 3.962 10 H 0.067 0.933 11 C -0.167 4.167 12 S -0.118 6.118 13 C -0.129 4.129 14 H 0.134 0.866 15 C -0.028 4.028 16 C -0.242 4.242 17 C -0.235 4.235 18 C -0.114 4.114 19 O -0.052 6.052 20 C -0.012 4.012 21 H 0.102 0.898 22 N -0.352 5.352 23 H 0.072 0.928 24 H 0.135 0.865 25 H 0.092 0.908 26 H 0.160 0.840 27 H 0.162 0.838 28 H 0.216 0.784 29 H 0.139 0.861 30 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 4.099 -9.428 3.800 10.960 hybrid contribution 1.142 0.230 0.122 1.171 sum 5.241 -9.198 3.922 11.290 Atomic orbital electron populations 1.69902 1.05915 1.26823 1.50392 1.24987 0.94936 0.99356 0.94825 0.86439 0.80163 0.83327 0.77556 1.19678 1.20940 1.21056 1.21038 0.92957 0.89181 1.50441 0.91997 1.19467 0.91607 0.91719 0.93389 0.93267 1.24884 1.04848 0.84526 1.02427 1.87531 1.19881 1.16565 1.87858 1.23293 0.92693 1.03425 0.93514 0.86633 1.22125 0.99952 0.90588 0.90091 1.21439 1.03766 0.98583 1.00436 1.21700 1.05533 0.98790 0.97505 1.23998 0.97343 0.92777 0.97291 1.84101 1.51750 1.41397 1.27939 1.22396 1.00955 0.90712 0.87158 0.89778 1.58820 1.14862 1.48215 1.13271 0.92779 0.86530 0.90828 0.83957 0.83835 0.78418 0.86058 0.84889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.58 11.78 55.43 0.65 -23.92 16 2 C 0.06 1.63 5.31 -17.82 -0.09 1.54 16 3 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.50 -13.14 8.44 -34.44 -0.29 -13.43 16 8 H 0.06 1.66 7.54 -52.49 -0.40 1.27 16 9 C 0.06 1.40 2.09 -90.66 -0.19 1.21 16 10 H 0.05 1.28 7.91 -51.93 -0.41 0.87 16 11 C -0.02 -0.45 6.18 38.30 0.24 -0.21 16 12 S -0.35 -7.18 22.64 -107.50 -2.43 -9.61 16 13 C 0.00 0.03 3.48 -27.52 -0.10 -0.07 16 14 H 0.12 1.81 7.87 -51.93 -0.41 1.41 16 15 C 0.03 0.46 5.67 -35.62 -0.20 0.25 16 16 C -0.22 -3.30 10.79 -39.71 -0.43 -3.72 16 17 C -0.22 -2.91 10.91 -39.70 -0.43 -3.34 16 18 C -0.05 -0.64 12.09 29.42 0.36 -0.28 16 19 O -0.16 -2.86 10.65 5.72 0.06 -2.80 16 20 C 0.10 2.01 2.91 -67.39 -0.20 1.81 16 21 H 0.08 1.83 7.09 -51.93 -0.37 1.47 16 22 N -0.82 -14.34 9.00 -4.39 -0.04 -14.38 16 23 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 24 H 0.12 2.95 7.08 -51.93 -0.37 2.58 16 25 H 0.07 1.78 8.10 -51.93 -0.42 1.36 16 26 H 0.14 1.80 8.06 -52.49 -0.42 1.37 16 27 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 28 H 0.20 1.98 8.06 -52.49 -0.42 1.56 16 29 H 0.33 4.73 9.04 -39.29 -0.36 4.38 16 30 H 0.34 5.50 8.87 -39.29 -0.35 5.15 16 LS Contribution 268.79 15.07 4.05 4.05 Total: -1.00 -28.70 268.79 -7.55 -36.25 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -3.48 Total: 10.73 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -1.34 Total: -16.25 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.61 Total: -38.31 kcal Atomic # 8 Polarization: -2.86 SS G_CDS: 0.06 Total: -2.80 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: -7.18 SS G_CDS: -2.43 Total: -9.61 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.70 -7.55 -36.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259698880.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.885 kcal (2) G-P(sol) polarization free energy of solvation -28.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds