Wall clock time and date at job start Mon Mar 30 2020 03:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00422 * 2 1 4 4 H 1.48496 * 109.47559 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47021 * 300.00182 * 3 2 1 6 6 H 1.48497 * 109.46958 * 60.00050 * 3 2 1 7 7 C 1.37880 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00038 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99965 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.44704 * 59.77785 * 9 7 2 11 11 C 1.55151 * 109.60448 * 299.54248 * 9 7 2 12 12 S 1.83991 * 100.90836 * 198.62762 * 11 9 7 13 13 C 1.83389 * 95.85007 * 35.35132 * 12 11 9 14 14 H 1.08999 * 110.43520 * 221.33106 * 13 12 11 15 15 C 1.50712 * 110.34052 * 99.12402 * 13 12 11 16 16 C 1.34511 * 125.78940 * 124.45220 * 15 13 12 17 17 C 1.41377 * 106.83818 * 180.02562 * 16 15 13 18 18 C 1.34515 * 106.84366 * 359.97438 * 17 16 15 19 19 O 1.34296 * 125.78462 * 304.14618 * 15 13 12 20 20 C 1.52937 * 109.60252 * 180.02562 * 9 7 2 21 21 H 1.09004 * 108.77838 * 29.31818 * 20 9 7 22 22 N 1.46905 * 108.88862 * 270.82763 * 20 9 7 23 23 H 0.97003 * 119.99649 * 359.97438 * 1 2 3 24 24 H 1.09000 * 111.12964 * 80.71782 * 11 9 7 25 25 H 1.08993 * 111.13343 * 316.54034 * 11 9 7 26 26 H 1.07995 * 126.57903 * 0.03793 * 16 15 13 27 27 H 1.07998 * 126.57824 * 180.02562 * 17 16 15 28 28 H 1.08000 * 125.79076 * 180.02562 * 18 17 16 29 29 H 1.00901 * 110.99869 * 175.56929 * 22 20 9 30 30 H 1.00896 * 110.99543 * 299.52052 * 22 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6211 -2.5546 -0.8884 11 6 0.3671 -2.5900 1.2713 12 16 0.0423 -4.3996 1.3412 13 6 1.6863 -4.9092 0.7082 14 1 1.5836 -5.7332 0.0021 15 6 2.5865 -5.3076 1.8494 16 6 3.2205 -6.4872 1.9763 17 6 3.9497 -6.4321 3.1862 18 6 3.7182 -5.2219 3.7261 19 8 2.8964 -4.5430 2.9090 20 6 2.2421 -3.6639 -0.0005 21 1 3.1548 -3.3480 0.5048 22 7 2.5656 -4.0131 -1.3903 23 1 -0.4850 0.8401 0.0004 24 1 -0.5592 -2.0290 1.1470 25 1 0.9121 -2.2542 2.1535 26 1 3.1802 -7.3170 1.2863 27 1 4.5736 -7.2117 3.5977 28 1 4.1276 -4.8565 4.6562 29 1 3.2732 -4.7315 -1.4273 30 1 1.7381 -4.2943 -1.8944 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259698880.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:17 Heat of formation + Delta-G solvation = -5.076577 kcal Electronic energy + Delta-G solvation = -15120.143759 eV Core-core repulsion = 12621.214957 eV Total energy + Delta-G solvation = -2498.928802 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.47080 -38.55165 -35.01882 -33.90099 -31.96290 -31.92649 -27.86280 -27.22559 -24.54513 -22.66943 -21.66608 -21.03282 -19.03261 -18.11742 -17.47595 -16.82517 -16.57030 -16.27515 -15.78230 -15.53533 -14.99298 -14.31956 -13.85670 -13.67344 -13.59779 -13.35147 -13.10477 -12.74079 -12.60691 -12.40719 -12.33520 -11.73404 -11.32591 -10.82745 -10.79730 -10.48371 -9.88217 -9.16240 -8.72088 -8.15780 -6.25700 0.47077 1.22075 1.38233 1.42821 1.48465 1.54493 1.81180 2.13081 2.42473 3.13975 3.47691 3.68985 3.86869 4.01477 4.18896 4.28314 4.35854 4.64006 4.72528 4.82029 4.92640 5.01239 5.17799 5.35151 5.59261 5.65392 5.81252 6.18882 6.26759 6.31445 6.70032 6.79525 7.40986 8.91420 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.028929 B = 0.008150 C = 0.007649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.652910 B = 3434.558628 C = 3659.719355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.016 3.984 3 Si 0.956 3.044 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.512 4.512 8 H 0.052 0.948 9 C 0.060 3.940 10 H 0.022 0.978 11 C -0.014 4.014 12 S -0.350 6.350 13 C 0.019 3.981 14 H 0.143 0.857 15 C -0.018 4.018 16 C -0.203 4.203 17 C -0.217 4.217 18 C -0.049 4.049 19 O -0.193 6.193 20 C 0.114 3.886 21 H 0.065 0.935 22 N -0.829 5.829 23 H 0.263 0.737 24 H 0.090 0.910 25 H 0.056 0.944 26 H 0.168 0.832 27 H 0.178 0.822 28 H 0.233 0.767 29 H 0.348 0.652 30 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.771 -11.603 3.872 13.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.184 4.184 3 Si 0.782 3.218 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.551 4.551 8 H 0.071 0.929 9 C 0.040 3.960 10 H 0.040 0.960 11 C -0.163 4.163 12 S -0.119 6.119 13 C -0.111 4.111 14 H 0.161 0.839 15 C -0.070 4.070 16 C -0.225 4.225 17 C -0.236 4.236 18 C -0.117 4.117 19 O -0.089 6.089 20 C 0.000 4.000 21 H 0.083 0.917 22 N -0.359 5.359 23 H 0.072 0.928 24 H 0.109 0.891 25 H 0.075 0.925 26 H 0.185 0.815 27 H 0.195 0.805 28 H 0.249 0.751 29 H 0.162 0.838 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 5.709 -11.057 4.143 13.116 hybrid contribution 0.711 0.629 0.051 0.951 sum 6.420 -10.428 4.193 12.944 Atomic orbital electron populations 1.70015 1.07050 1.27485 1.51082 1.25701 0.95690 1.02362 0.94604 0.85526 0.79037 0.79661 0.77593 1.19342 1.20574 1.20623 1.21286 0.92707 0.90756 1.50388 0.92936 1.19343 0.91828 0.92657 0.92203 0.95986 1.24428 1.03354 0.86949 1.01548 1.87392 1.22705 1.13455 1.88336 1.23275 0.90560 1.02997 0.94294 0.83898 1.22063 1.02276 0.91942 0.90745 1.21861 1.01868 0.97866 1.00909 1.22130 1.05381 0.99294 0.96748 1.24865 0.96006 0.93042 0.97739 1.84072 1.53080 1.42892 1.28860 1.21946 0.98792 0.90559 0.88655 0.91699 1.58682 1.15904 1.49529 1.11784 0.92752 0.89115 0.92509 0.81457 0.80476 0.75110 0.83770 0.83993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.96 11.78 21.45 0.25 -51.71 16 2 C 0.02 0.87 5.31 84.66 0.45 1.32 16 3 Si 0.96 43.51 29.54 68.60 2.03 45.53 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 7 C -0.51 -27.78 8.44 25.60 0.22 -27.57 16 8 H 0.05 2.88 7.54 -2.91 -0.02 2.86 16 9 C 0.06 2.95 2.09 -10.82 -0.02 2.93 16 10 H 0.02 1.19 7.91 -2.39 -0.02 1.17 16 11 C -0.01 -0.70 6.18 72.72 0.45 -0.25 16 12 S -0.35 -14.43 22.64 -56.49 -1.28 -15.71 16 13 C 0.02 0.66 3.48 30.08 0.10 0.77 16 14 H 0.14 4.12 7.87 -2.39 -0.02 4.10 16 15 C -0.02 -0.59 5.67 24.84 0.14 -0.45 16 16 C -0.20 -5.39 10.79 22.19 0.24 -5.16 16 17 C -0.22 -5.02 10.91 22.19 0.24 -4.77 16 18 C -0.05 -1.25 12.09 66.97 0.81 -0.44 16 19 O -0.19 -6.83 10.65 -2.46 -0.03 -6.85 16 20 C 0.11 4.54 2.91 45.12 0.13 4.67 16 21 H 0.06 2.85 7.09 -2.39 -0.02 2.84 16 22 N -0.83 -27.99 9.00 -167.79 -1.51 -29.50 16 23 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 24 H 0.09 4.84 7.08 -2.39 -0.02 4.82 16 25 H 0.06 2.88 8.10 -2.39 -0.02 2.86 16 26 H 0.17 3.48 8.06 -2.91 -0.02 3.46 16 27 H 0.18 2.82 8.06 -2.91 -0.02 2.80 16 28 H 0.23 3.90 8.06 -2.91 -0.02 3.88 16 29 H 0.35 9.32 9.04 -89.69 -0.81 8.51 16 30 H 0.35 10.86 8.87 -89.70 -0.80 10.07 16 Total: -1.00 -63.09 268.79 1.78 -61.31 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: -0.44 Total: 25.90 kcal Atomic # 6 Polarization: -31.73 SS G_CDS: 2.76 Total: -28.97 kcal Atomic # 7 Polarization: -79.95 SS G_CDS: -1.26 Total: -81.21 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: -0.03 Total: -6.85 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: -14.43 SS G_CDS: -1.28 Total: -15.71 kcal Total: -63.09 1.78 -61.31 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259698880.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.229 kcal (2) G-P(sol) polarization free energy of solvation -63.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds