Wall clock time and date at job start Mon Mar 30 2020 03:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30886 * 1 3 3 Si 1.86799 * 120.00330 * 2 1 4 4 H 1.48508 * 109.46940 * 240.00319 * 3 2 1 5 5 H 1.48495 * 109.46950 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47255 * 120.00361 * 3 2 1 7 7 C 1.39882 * 119.99644 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99802 * 163.09807 * 7 2 1 9 9 C 1.41191 * 119.99679 * 343.09597 * 7 2 1 10 10 C 1.40766 * 120.09816 * 334.49210 * 9 7 2 11 11 C 1.37846 * 119.59975 * 179.97438 * 10 9 7 12 12 O 1.35609 * 132.90803 * 180.02562 * 11 10 9 13 13 C 1.34241 * 109.04960 * 179.97438 * 12 11 10 14 14 O 1.21579 * 125.21920 * 179.97438 * 13 12 11 15 15 N 1.34728 * 109.56560 * 359.97438 * 13 12 11 16 16 H 0.96994 * 126.17112 * 179.97438 * 15 13 12 17 17 C 1.38914 * 107.66069 * 0.22601 * 15 13 12 18 18 C 1.39361 * 133.08544 * 180.42702 * 17 15 13 19 19 Cl 1.73601 * 119.87998 * 359.36045 * 18 17 15 20 20 C 1.36449 * 120.22961 * 179.62995 * 18 17 15 21 21 H 0.96999 * 119.99288 * 359.97438 * 1 2 3 22 22 H 1.07994 * 120.20220 * 0.02562 * 10 9 7 23 23 H 1.08004 * 119.95734 * 179.77648 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.0967 1.6963 -1.2126 5 1 1.2780 2.7464 -0.0006 6 1 3.0968 1.6963 1.2124 7 6 2.0082 -1.2115 -0.0005 8 1 3.0532 -1.2316 -0.2725 9 6 1.3479 -2.4079 0.3545 10 6 0.2185 -2.3685 1.1938 11 6 -0.4186 -3.5428 1.5335 12 8 -1.5013 -3.8167 2.3027 13 6 -1.7105 -5.1427 2.3086 14 8 -2.6050 -5.7087 2.9066 15 7 -0.7772 -5.7500 1.5502 16 1 -0.7027 -6.7035 1.3885 17 6 0.0626 -4.7650 1.0462 18 6 1.1777 -4.8005 0.2110 19 17 1.7601 -6.3216 -0.3898 20 6 1.8165 -3.6445 -0.1317 21 1 -0.4849 0.8401 0.0004 22 1 -0.1471 -1.4241 1.5688 23 1 2.6824 -3.6775 -0.7763 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259974243.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:10 Heat of formation + Delta-G solvation = -59.730713 kcal Electronic energy + Delta-G solvation = -14294.809991 eV Core-core repulsion = 11519.801313 eV Total energy + Delta-G solvation = -2775.008679 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 239.014 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.98346 -39.47935 -38.42712 -37.37075 -36.39028 -34.99187 -30.99634 -30.91378 -27.02909 -24.42811 -23.89934 -23.21900 -19.95158 -19.14387 -18.59501 -18.24464 -17.17221 -16.90739 -16.32130 -15.65197 -15.13465 -14.77652 -14.49830 -13.97721 -13.94056 -13.33589 -12.88570 -12.67054 -12.50062 -12.16791 -12.12681 -11.99863 -11.80552 -11.62060 -10.90877 -9.42840 -9.14698 -8.76488 -6.47220 0.40075 0.54279 1.17499 1.43242 1.47408 1.48668 1.54702 1.59488 2.14755 2.21129 2.48216 3.37406 3.89935 4.17493 4.31799 4.76903 4.96992 5.10964 5.17254 5.28904 5.63847 5.65441 5.82591 6.14836 6.45099 6.65139 6.71117 6.80850 8.17976 Molecular weight = 239.01amu Principal moments of inertia in cm(-1) A = 0.026876 B = 0.008574 C = 0.006621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.585149 B = 3264.788375 C = 4227.682893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.036 3.964 3 Si 0.987 3.013 4 H -0.253 1.253 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.458 4.458 8 H 0.105 0.895 9 C 0.112 3.888 10 C -0.164 4.164 11 C 0.061 3.939 12 O -0.259 6.259 13 C 0.628 3.372 14 O -0.545 6.545 15 N -0.612 5.612 16 H 0.445 0.555 17 C -0.075 4.075 18 C 0.032 3.968 19 Cl -0.071 7.071 20 C -0.190 4.190 21 H 0.296 0.704 22 H 0.123 0.877 23 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.000 -2.491 -1.818 5.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.183 4.183 3 Si 0.808 3.192 4 H -0.177 1.177 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.486 4.486 8 H 0.123 0.877 9 C 0.108 3.892 10 C -0.185 4.185 11 C 0.015 3.985 12 O -0.165 6.165 13 C 0.382 3.618 14 O -0.434 6.434 15 N -0.270 5.270 16 H 0.289 0.711 17 C -0.173 4.173 18 C 0.003 3.997 19 Cl -0.042 7.042 20 C -0.210 4.210 21 H 0.107 0.893 22 H 0.140 0.860 23 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.185 -2.492 -1.422 5.074 hybrid contribution -0.081 -0.028 -0.056 0.102 sum 4.104 -2.520 -1.477 5.037 Atomic orbital electron populations 1.69852 1.09310 1.31751 1.32130 1.26895 0.95429 1.05054 0.90892 0.85133 0.78679 0.74912 0.80511 1.17710 1.19829 1.18160 1.19934 0.98915 0.90869 1.38835 0.87737 1.17418 0.90084 0.93141 0.88608 1.20255 1.00523 0.93678 1.03998 1.19046 0.87956 0.95334 0.96159 1.84876 1.44256 1.25259 1.62068 1.18456 0.82949 0.79465 0.80930 1.91047 1.35744 1.65523 1.51118 1.42760 1.27082 1.10360 1.46803 0.71072 1.17523 1.00915 0.87168 1.11710 1.19207 0.94363 0.87464 0.98617 1.98302 1.88063 1.30762 1.87085 1.20822 1.04414 0.89728 1.06064 0.89285 0.85953 0.84052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -37.07 10.96 21.82 0.24 -36.83 14 2 C 0.04 1.53 5.15 85.23 0.44 1.97 14 3 Si 0.99 32.29 29.59 68.60 2.03 34.32 14 4 H -0.25 -7.90 7.11 99.48 0.71 -7.19 14 5 H -0.27 -8.79 7.11 99.48 0.71 -8.08 14 6 H -0.26 -8.28 7.11 99.48 0.71 -7.57 14 7 C -0.46 -20.27 9.03 23.39 0.21 -20.06 14 8 H 0.10 4.21 7.90 -2.91 -0.02 4.19 14 9 C 0.11 5.08 5.57 -21.28 -0.12 4.96 14 10 C -0.16 -7.82 8.69 22.80 0.20 -7.63 14 11 C 0.06 2.77 7.33 22.63 0.17 2.94 14 12 O -0.26 -11.92 10.73 7.86 0.08 -11.84 14 13 C 0.63 26.67 9.43 129.80 1.22 27.90 14 14 O -0.55 -24.72 18.05 19.26 0.35 -24.37 14 15 N -0.61 -22.41 6.19 -429.47 -2.66 -25.07 14 16 H 0.45 13.19 8.96 -92.71 -0.83 12.36 14 17 C -0.08 -3.07 7.05 38.74 0.27 -2.79 14 18 C 0.03 1.23 6.29 22.12 0.14 1.37 14 19 Cl -0.07 -2.16 28.94 -2.72 -0.08 -2.24 14 20 C -0.19 -7.63 9.49 22.50 0.21 -7.41 14 21 H 0.30 12.38 8.30 -92.71 -0.77 11.61 14 22 H 0.12 6.16 6.19 -2.91 -0.02 6.14 14 23 H 0.14 5.06 8.06 -2.91 -0.02 5.03 14 Total: -1.00 -51.45 233.21 3.17 -48.29 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: 0.46 Total: 16.49 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 2.75 Total: 1.25 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: -2.42 Total: -61.90 kcal Atomic # 8 Polarization: -36.64 SS G_CDS: 0.43 Total: -36.21 kcal Atomic # 14 Polarization: 32.29 SS G_CDS: 2.03 Total: 34.32 kcal Atomic # 17 Polarization: -2.16 SS G_CDS: -0.08 Total: -2.24 kcal Total: -51.45 3.17 -48.29 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259974243.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.443 kcal (2) G-P(sol) polarization free energy of solvation -51.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds