Wall clock time and date at job start Mon Mar 30 2020 03:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30737 * 1 3 3 Si 1.86802 * 119.99645 * 2 1 4 4 H 1.48500 * 109.47256 * 240.00257 * 3 2 1 5 5 H 1.48503 * 109.47391 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47108 * 120.00117 * 3 2 1 7 7 C 1.40039 * 120.00065 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00096 * 179.97438 * 7 2 1 9 9 C 1.40684 * 120.00211 * 0.02562 * 7 2 1 10 10 C 1.41946 * 120.04389 * 180.02562 * 9 7 2 11 11 C 1.35580 * 119.17715 * 179.97438 * 10 9 7 12 12 O 1.35406 * 120.39631 * 180.27433 * 11 10 9 13 13 N 1.37515 * 119.20380 * 359.97438 * 11 10 9 14 14 N 1.39982 * 132.36547 * 179.97438 * 13 11 10 15 15 C 1.31499 * 109.07459 * 180.02562 * 14 13 11 16 16 C 1.38524 * 109.16566 * 0.02562 * 15 14 13 17 17 Cl 1.73598 * 126.25057 * 179.97438 * 16 15 14 18 18 C 1.37626 * 120.04840 * 0.02562 * 13 11 10 19 19 N 1.32867 * 120.85945 * 0.02562 * 18 13 11 20 20 H 0.96996 * 120.00108 * 0.02562 * 1 2 3 21 21 H 1.08005 * 120.41030 * 359.94924 * 10 9 7 22 22 H 0.96704 * 113.99746 * 269.72138 * 12 11 10 23 23 H 1.07999 * 125.41175 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.0950 1.6966 -1.2125 5 1 1.2762 2.7465 0.0006 6 1 3.0950 1.6965 1.2124 7 6 2.0076 -1.2128 -0.0005 8 1 3.0876 -1.2128 -0.0010 9 6 1.3042 -2.4312 -0.0016 10 6 2.0131 -3.6610 -0.0016 11 6 1.3175 -4.8248 -0.0022 12 8 1.9686 -6.0120 0.0034 13 7 -0.0570 -4.7849 -0.0021 14 7 -1.0299 -5.7914 -0.0031 15 6 -2.2221 -5.2367 -0.0031 16 6 -2.0825 -3.8585 -0.0029 17 17 -3.3718 -2.6961 -0.0035 18 6 -0.7114 -3.5742 -0.0021 19 7 -0.0320 -2.4323 -0.0026 20 1 -0.4850 0.8400 -0.0004 21 1 3.0931 -3.6695 -0.0016 22 1 2.1579 -6.3609 -0.8784 23 1 -3.1608 -5.7708 -0.0042 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260100329.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:36 Heat of formation + Delta-G solvation = 59.686618 kcal Electronic energy + Delta-G solvation = -14421.073534 eV Core-core repulsion = 11683.535931 eV Total energy + Delta-G solvation = -2737.537604 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 239.020 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.73083 -37.74188 -36.39999 -35.11062 -33.62527 -31.20819 -30.18235 -27.63098 -26.32804 -22.86177 -21.83013 -20.30203 -18.31093 -17.88005 -16.34113 -15.98613 -15.22777 -15.07672 -14.09929 -13.68297 -13.40431 -12.83102 -12.59890 -11.80720 -11.79022 -11.16053 -11.10082 -11.07308 -10.86456 -10.51653 -10.34423 -9.61327 -9.50669 -9.24421 -8.41700 -8.10443 -6.83961 -6.65083 -5.08649 1.82776 2.28290 2.88876 2.91754 2.92290 2.92509 3.56176 3.64819 3.89366 4.27403 4.43330 5.29212 5.41540 5.64213 6.01753 6.21156 6.48193 6.55000 6.62649 6.87317 7.30857 7.49166 7.74494 7.82503 8.00138 8.27686 8.72729 9.66272 9.86125 Molecular weight = 239.02amu Principal moments of inertia in cm(-1) A = 0.023014 B = 0.010499 C = 0.007233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.378534 B = 2666.396993 C = 3870.417975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.665 5.665 2 C 0.053 3.947 3 Si 0.919 3.081 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.261 1.261 7 C -0.368 4.368 8 H 0.098 0.902 9 C 0.256 3.744 10 C -0.233 4.233 11 C 0.332 3.668 12 O -0.479 6.479 13 N -0.372 5.372 14 N -0.371 5.371 15 C 0.106 3.894 16 C -0.277 4.277 17 Cl -0.065 7.065 18 C 0.362 3.638 19 N -0.501 5.501 20 H 0.286 0.714 21 H 0.144 0.856 22 H 0.393 0.607 23 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.138 -1.073 -1.683 2.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.284 5.284 2 C -0.179 4.179 3 Si 0.742 3.258 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.185 1.185 7 C -0.402 4.402 8 H 0.116 0.884 9 C 0.124 3.876 10 C -0.261 4.261 11 C 0.181 3.819 12 O -0.284 6.284 13 N -0.160 5.160 14 N -0.196 5.196 15 C -0.073 4.073 16 C -0.321 4.321 17 Cl -0.038 7.038 18 C 0.123 3.877 19 N -0.225 5.225 20 H 0.098 0.902 21 H 0.162 0.838 22 H 0.249 0.751 23 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 1.933 -1.318 -1.075 2.575 hybrid contribution 0.233 0.564 -0.475 0.773 sum 2.166 -0.755 -1.550 2.769 Atomic orbital electron populations 1.70104 1.07344 1.29512 1.21425 1.26248 0.95200 1.01798 0.94615 0.86163 0.80042 0.79365 0.80255 1.18497 1.19699 1.18491 1.19715 0.94985 0.88995 1.36473 0.88355 1.18651 0.87953 0.91282 0.89673 1.21939 1.00907 0.90514 1.12739 1.18156 0.77854 0.86178 0.99736 1.84761 1.74293 1.35539 1.33817 1.47537 1.04248 1.08448 1.55725 1.77507 0.94684 1.10872 1.36503 1.23154 0.96407 0.91597 0.96103 1.19268 0.85779 0.89036 1.37970 1.98194 1.47456 1.59643 1.98468 1.21004 0.92810 0.80502 0.93416 1.69327 1.06232 1.17673 1.29314 0.90215 0.83850 0.75069 0.80721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.66 -16.18 11.46 55.55 0.64 -15.55 14 2 C 0.05 1.17 5.50 -17.34 -0.10 1.08 14 3 Si 0.92 16.14 29.56 -169.99 -5.02 11.12 14 4 H -0.26 -4.48 7.11 56.52 0.40 -4.08 14 5 H -0.27 -4.77 7.11 56.52 0.40 -4.37 14 6 H -0.26 -4.51 7.11 56.52 0.40 -4.11 14 7 C -0.37 -8.39 9.13 -37.98 -0.35 -8.73 14 8 H 0.10 1.95 7.85 -52.48 -0.41 1.54 14 9 C 0.26 6.27 6.57 -84.75 -0.56 5.71 14 10 C -0.23 -4.95 9.70 -39.11 -0.38 -5.32 14 11 C 0.33 7.18 7.84 -15.95 -0.13 7.06 14 12 O -0.48 -8.61 13.55 -17.91 -0.24 -8.85 14 13 N -0.37 -9.05 3.94 -12.16 -0.05 -9.10 14 14 N -0.37 -8.64 12.65 30.46 0.39 -8.25 14 15 C 0.11 2.29 11.92 -17.59 -0.21 2.08 14 16 C -0.28 -6.62 6.78 -38.80 -0.26 -6.88 14 17 Cl -0.07 -1.42 29.32 -51.86 -1.52 -2.94 14 18 C 0.36 9.39 7.95 -155.61 -1.24 8.16 14 19 N -0.50 -13.39 7.98 -10.20 -0.08 -13.48 14 20 H 0.29 6.32 8.29 -40.82 -0.34 5.98 14 21 H 0.14 2.53 8.06 -52.48 -0.42 2.10 14 22 H 0.39 4.92 9.06 45.56 0.41 5.33 14 23 H 0.18 2.98 8.06 -52.49 -0.42 2.56 14 LS Contribution 236.48 15.07 3.56 3.56 Total: -1.00 -29.86 236.48 -5.52 -35.38 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: 0.02 Total: 4.97 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: -3.21 Total: 3.15 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: 0.89 Total: -46.38 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -0.24 Total: -8.85 kcal Atomic # 14 Polarization: 16.14 SS G_CDS: -5.02 Total: 11.12 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -1.52 Total: -2.94 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -29.86 -5.52 -35.38 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260100329.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.068 kcal (2) G-P(sol) polarization free energy of solvation -29.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds