Wall clock time and date at job start Mon Mar 30 2020 03:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 119.99950 * 2 1 4 4 H 1.48507 * 109.47268 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47452 * 300.00299 * 3 2 1 6 6 H 1.48494 * 109.47274 * 60.00766 * 3 2 1 7 7 C 1.37880 * 120.00242 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00548 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99611 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.47496 * 300.00455 * 9 7 2 11 11 N 1.46909 * 109.46905 * 60.00585 * 9 7 2 12 12 C 1.50695 * 109.47169 * 180.02562 * 9 7 2 13 13 C 1.33074 * 125.19184 * 100.00247 * 12 9 7 14 14 C 1.38912 * 115.63402 * 179.74081 * 13 12 9 15 15 C 1.34868 * 113.67374 * 0.02562 * 14 13 12 16 16 S 1.75514 * 110.04648 * 359.97438 * 15 14 13 17 17 C 1.51399 * 123.68394 * 179.97438 * 15 14 13 18 18 C 1.53439 * 107.90126 * 344.48177 * 17 15 14 19 19 O 1.43043 * 109.07625 * 47.46439 * 18 17 15 20 20 C 1.43007 * 114.25809 * 288.74625 * 19 18 17 21 21 H 0.97001 * 120.00014 * 359.97438 * 1 2 3 22 22 H 1.00903 * 110.99676 * 60.00158 * 11 9 7 23 23 H 1.00894 * 110.99856 * 183.95018 * 11 9 7 24 24 H 1.07997 * 122.18075 * 359.71946 * 13 12 9 25 25 H 1.09000 * 109.77495 * 104.07947 * 17 15 14 26 26 H 1.08993 * 109.77843 * 224.82268 * 17 15 14 27 27 H 1.08991 * 109.53766 * 167.34816 * 18 17 15 28 28 H 1.08996 * 109.53459 * 287.59045 * 18 17 15 29 29 H 1.08999 * 109.67942 * 292.34194 * 20 19 18 30 30 H 1.09002 * 109.70291 * 171.76606 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8896 11 7 0.4061 -2.5767 -1.1998 12 6 2.2302 -3.6446 -0.0005 13 6 2.5850 -4.3503 1.0705 14 6 3.5013 -5.3691 0.8423 15 6 3.8847 -5.4741 -0.4464 16 16 3.0731 -4.2573 -1.4166 17 6 4.8742 -6.5049 -0.9468 18 6 5.6081 -7.0838 0.2700 19 8 4.6494 -7.4257 1.2751 20 6 4.0452 -6.3001 1.9178 21 1 -0.4850 0.8401 0.0004 22 1 0.9639 -2.5251 -2.0391 23 1 -0.1578 -3.4133 -1.1913 24 1 2.1868 -4.1441 2.0529 25 1 4.3446 -7.3005 -1.4709 26 1 5.5898 -6.0330 -1.6199 27 1 6.1588 -7.9762 -0.0271 28 1 6.3011 -6.3410 0.6650 29 1 4.7903 -5.7750 2.5154 30 1 3.2302 -6.6366 2.5586 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260203077.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:34 Heat of formation + Delta-G solvation = -17.688959 kcal Electronic energy + Delta-G solvation = -14699.617469 eV Core-core repulsion = 12200.141753 eV Total energy + Delta-G solvation = -2499.475716 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.37722 -36.58147 -34.34719 -32.17304 -31.40761 -28.90137 -26.12034 -25.30472 -23.82594 -21.82891 -20.36343 -17.85615 -17.02056 -16.43007 -16.24215 -15.14980 -14.72161 -14.56936 -14.29069 -13.81038 -13.29840 -13.05366 -12.63516 -12.35056 -12.04590 -11.67125 -11.40543 -11.10700 -10.93012 -10.70528 -10.64029 -10.28261 -9.90020 -9.55959 -9.27608 -8.49816 -7.84102 -7.74683 -7.22392 -5.94520 -4.10139 1.57399 2.17686 2.64856 3.21543 3.29581 3.37990 3.42358 3.86931 4.43944 4.83376 4.95150 5.12693 5.25613 5.31026 5.46795 5.51369 5.63798 5.66823 5.87006 6.10677 6.19356 6.26396 6.65904 6.86490 7.02813 7.17529 7.33852 7.84261 8.06417 8.51194 8.88650 9.04622 9.58857 11.09748 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.039739 B = 0.006480 C = 0.006366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.423741 B = 4319.626875 C = 4397.417560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.084 3.916 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.532 4.532 8 H 0.056 0.944 9 C 0.281 3.719 10 H 0.058 0.942 11 N -0.807 5.807 12 C -0.133 4.133 13 C -0.169 4.169 14 C -0.132 4.132 15 C -0.220 4.220 16 S 0.090 5.910 17 C -0.073 4.073 18 C 0.067 3.933 19 O -0.382 6.382 20 C 0.127 3.873 21 H 0.257 0.743 22 H 0.318 0.682 23 H 0.301 0.699 24 H 0.133 0.867 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.097 0.903 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.265 -11.787 -0.042 14.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.123 4.123 3 Si 0.714 3.286 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.572 4.572 8 H 0.074 0.926 9 C 0.169 3.831 10 H 0.076 0.924 11 N -0.333 5.333 12 C -0.254 4.254 13 C -0.197 4.197 14 C -0.146 4.146 15 C -0.337 4.337 16 S 0.356 5.644 17 C -0.113 4.113 18 C -0.011 4.011 19 O -0.300 6.300 20 C 0.048 3.952 21 H 0.067 0.933 22 H 0.130 0.870 23 H 0.112 0.888 24 H 0.151 0.849 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.115 0.885 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.677 -10.750 -1.292 13.273 hybrid contribution 1.031 0.108 1.156 1.553 sum 8.708 -10.642 -0.136 13.752 Atomic orbital electron populations 1.70107 1.05693 1.25824 1.46387 1.24943 0.94682 0.98631 0.94023 0.86648 0.80266 0.84073 0.77618 1.19831 1.20913 1.20961 1.20861 0.92342 0.89167 1.54788 0.92622 1.17948 0.86388 0.87313 0.91441 0.92404 1.59176 1.27897 1.42157 1.04038 1.26741 1.02688 1.01873 0.94053 1.19661 1.02124 0.97869 1.00057 1.20124 1.00347 0.99499 0.94654 1.24434 1.07769 1.04351 0.97148 1.83876 1.40532 1.27016 1.12938 1.20800 0.96257 0.95893 0.98304 1.22598 0.90393 1.00321 0.87808 1.87910 1.57561 1.31407 1.53157 1.21492 0.96588 0.85385 0.91699 0.93330 0.87022 0.88835 0.84945 0.90221 0.90159 0.88525 0.92771 0.91911 0.87812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.35 12.77 55.43 0.71 -23.64 16 2 C 0.08 2.34 5.39 -17.82 -0.10 2.24 16 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.53 -14.53 8.71 -34.44 -0.30 -14.84 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.28 6.92 3.05 -70.01 -0.21 6.71 16 10 H 0.06 1.55 8.12 -51.93 -0.42 1.13 16 11 N -0.81 -18.97 8.46 -6.65 -0.06 -19.03 16 12 C -0.13 -2.84 5.37 -36.11 -0.19 -3.03 16 13 C -0.17 -3.28 9.89 -41.13 -0.41 -3.69 16 14 C -0.13 -2.28 5.86 -104.78 -0.61 -2.89 16 15 C -0.22 -3.71 6.44 -35.16 -0.23 -3.94 16 16 S 0.09 1.67 22.51 -107.50 -2.42 -0.75 16 17 C -0.07 -0.95 6.55 -27.31 -0.18 -1.13 16 18 C 0.07 0.78 6.83 37.39 0.26 1.04 16 19 O -0.38 -5.38 10.72 -35.23 -0.38 -5.76 16 20 C 0.13 1.78 7.15 36.79 0.26 2.04 16 21 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 22 H 0.32 7.23 8.32 -39.29 -0.33 6.90 16 23 H 0.30 6.36 9.06 -39.30 -0.36 6.00 16 24 H 0.13 2.44 8.06 -52.49 -0.42 2.01 16 25 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.61 8.08 -51.93 -0.42 0.19 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 268.94 15.07 4.05 4.05 Total: -1.00 -29.95 268.94 -8.43 -38.38 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -3.60 Total: 8.03 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -1.71 Total: -17.49 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: 0.65 Total: -42.67 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -0.38 Total: -5.76 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 1.67 SS G_CDS: -2.42 Total: -0.75 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.95 -8.43 -38.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260203077.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.689 kcal (2) G-P(sol) polarization free energy of solvation -29.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds