Wall clock time and date at job start Mon Mar 30 2020 03:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99986 * 2 1 4 4 H 1.48503 * 109.47059 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47089 * 299.99705 * 3 2 1 6 6 H 1.48500 * 109.47435 * 59.99819 * 3 2 1 7 7 C 1.37876 * 119.99859 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00236 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00287 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46643 * 299.99489 * 9 7 2 11 11 C 1.53004 * 109.47159 * 59.99469 * 9 7 2 12 12 N 1.46892 * 109.47028 * 185.00515 * 11 9 7 13 13 C 1.50690 * 109.47252 * 179.97438 * 9 7 2 14 14 N 1.30363 * 126.27682 * 300.01940 * 13 9 7 15 15 N 1.28472 * 110.03733 * 180.02562 * 14 13 9 16 16 C 1.31990 * 109.50812 * 0.02562 * 15 14 13 17 17 S 1.76049 * 143.53724 * 179.97438 * 16 15 14 18 18 C 1.75813 * 90.65652 * 179.97438 * 17 16 15 19 19 N 1.27587 * 110.27894 * 0.02562 * 18 17 16 20 20 N 1.35477 * 107.65705 * 359.97438 * 16 15 14 21 21 H 0.96999 * 120.00023 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46868 * 305.00509 * 11 9 7 23 23 H 1.08997 * 109.47080 * 65.00009 * 11 9 7 24 24 H 1.00900 * 111.00233 * 56.04690 * 12 11 9 25 25 H 1.00901 * 111.00190 * 180.02562 * 12 11 9 26 26 H 1.07996 * 124.85566 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6241 -2.5567 0.8904 11 6 0.3718 -2.5805 -1.2490 12 7 -0.4515 -3.7956 -1.1901 13 6 2.2303 -3.6446 0.0005 14 7 3.1312 -3.8892 -0.9094 15 7 3.7957 -4.9438 -0.5986 16 6 3.3429 -5.4300 0.5419 17 16 3.5582 -6.7264 1.7133 18 6 2.2555 -6.0784 2.7002 19 7 1.7709 -5.0293 2.1594 20 7 2.3370 -4.6252 0.9611 21 1 -0.4850 0.8400 -0.0004 22 1 -0.2756 -1.7048 -1.2953 23 1 1.0038 -2.6124 -2.1365 24 1 -0.9994 -3.8205 -0.3432 25 1 -1.0414 -3.8726 -2.0051 26 1 1.9138 -6.5075 3.6305 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261085865.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:59 Heat of formation + Delta-G solvation = 144.165284 kcal Electronic energy + Delta-G solvation = -14797.522935 eV Core-core repulsion = 12233.818153 eV Total energy + Delta-G solvation = -2563.704782 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 239.054 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.72629 -38.00168 -35.44936 -32.31000 -31.60992 -30.58532 -27.80266 -24.87427 -24.07687 -22.72444 -21.57911 -20.30900 -18.14367 -16.85057 -16.24966 -15.93792 -15.18142 -15.02423 -14.71992 -13.74079 -13.13857 -13.09964 -12.71121 -12.12527 -11.61455 -11.37913 -11.07450 -10.93256 -10.53153 -10.41601 -10.32219 -10.15314 -9.93833 -9.71197 -9.35805 -8.64463 -7.84287 -7.69625 -6.22593 -4.30421 0.60925 1.03906 1.32962 2.16910 2.24132 3.22015 3.29478 3.33162 3.40200 4.25588 4.36226 4.83457 5.06772 5.47373 5.65629 5.71632 5.89448 6.39723 6.61501 6.79047 7.27102 7.49372 7.57064 7.76516 7.85090 8.14984 8.24810 8.72345 9.07263 9.34739 10.82438 Molecular weight = 239.05amu Principal moments of inertia in cm(-1) A = 0.032142 B = 0.007799 C = 0.007368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.924700 B = 3589.254035 C = 3799.479692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.905 3.095 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.509 4.509 8 H 0.066 0.934 9 C 0.129 3.871 10 H 0.051 0.949 11 C 0.065 3.935 12 N -0.863 5.863 13 C 0.320 3.680 14 N -0.269 5.269 15 N -0.239 5.239 16 C 0.036 3.964 17 S 0.155 5.845 18 C 0.061 3.939 19 N -0.214 5.214 20 N -0.337 5.337 21 H 0.265 0.735 22 H 0.080 0.920 23 H 0.059 0.941 24 H 0.329 0.671 25 H 0.326 0.674 26 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.979 -10.951 6.073 12.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.136 4.136 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.548 4.548 8 H 0.084 0.916 9 C 0.108 3.892 10 H 0.069 0.931 11 C -0.065 4.065 12 N -0.390 5.390 13 C 0.054 3.946 14 N -0.107 5.107 15 N -0.084 5.084 16 C -0.337 4.337 17 S 0.385 5.615 18 C -0.260 4.260 19 N -0.024 5.024 20 N -0.123 5.123 21 H 0.075 0.925 22 H 0.097 0.903 23 H 0.077 0.923 24 H 0.140 0.860 25 H 0.136 0.864 26 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 2.469 -11.263 4.907 12.531 hybrid contribution -1.428 1.864 0.933 2.527 sum 1.041 -9.399 5.840 11.114 Atomic orbital electron populations 1.69859 1.05956 1.27139 1.49833 1.24926 0.95013 0.99427 0.94227 0.86303 0.80241 0.82497 0.77737 1.19443 1.20597 1.20827 1.20953 0.93444 0.88479 1.51960 0.91587 1.17673 0.89190 0.85842 0.96521 0.93107 1.22049 0.95957 0.90614 0.97919 1.59019 1.30020 1.43681 1.06318 1.26464 0.97709 0.89776 0.80660 1.74305 1.06343 1.08975 1.21105 1.74612 1.21285 1.05566 1.06986 1.27991 0.99656 1.02293 1.03768 1.85019 1.38319 1.24782 1.13349 1.29899 0.97353 0.94439 1.04308 1.73575 1.19308 1.14115 0.95412 1.49242 1.25130 1.22561 1.15396 0.92524 0.90255 0.92273 0.86026 0.86397 0.74466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.96 11.29 55.43 0.63 -23.34 15 2 C 0.07 1.77 5.29 -17.82 -0.09 1.68 15 3 Si 0.91 20.95 29.54 -169.99 -5.02 15.93 15 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 15 5 H -0.28 -6.40 7.11 56.52 0.40 -6.00 15 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 15 7 C -0.51 -13.94 8.55 -34.44 -0.29 -14.23 15 8 H 0.07 1.87 7.74 -52.49 -0.41 1.47 15 9 C 0.13 3.28 2.39 -92.92 -0.22 3.06 15 10 H 0.05 1.36 8.14 -51.93 -0.42 0.94 15 11 C 0.07 1.55 6.00 -3.83 -0.02 1.53 15 12 N -0.86 -17.45 9.34 -10.37 -0.10 -17.55 15 13 C 0.32 7.82 6.51 -153.07 -1.00 6.83 15 14 N -0.27 -6.79 12.18 33.18 0.40 -6.39 15 15 N -0.24 -5.54 12.28 30.56 0.38 -5.17 15 16 C 0.04 0.72 9.11 -88.72 -0.81 -0.08 15 17 S 0.15 1.97 23.37 -107.50 -2.51 -0.55 15 18 C 0.06 0.70 12.45 51.00 0.64 1.33 15 19 N -0.21 -3.71 11.97 29.88 0.36 -3.35 15 20 N -0.34 -7.22 4.46 -9.85 -0.04 -7.26 15 21 H 0.26 6.78 8.31 -40.82 -0.34 6.44 15 22 H 0.08 2.01 5.95 -51.93 -0.31 1.70 15 23 H 0.06 1.47 8.14 -51.93 -0.42 1.04 15 24 H 0.33 6.41 8.99 -39.29 -0.35 6.06 15 25 H 0.33 5.74 9.08 -39.29 -0.36 5.38 15 26 H 0.24 1.19 8.06 -52.49 -0.42 0.76 15 LS Contribution 250.46 15.07 3.77 3.77 Total: -1.00 -32.16 250.46 -5.77 -37.92 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -1.83 Total: 5.85 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -1.80 Total: 0.11 kcal Atomic # 7 Polarization: -64.68 SS G_CDS: 1.62 Total: -63.05 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -2.51 Total: -0.55 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -32.16 -5.77 -37.92 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261085865.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.090 kcal (2) G-P(sol) polarization free energy of solvation -32.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 149.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds