Wall clock time and date at job start Mon Mar 30 2020 03:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30691 * 1 3 3 Si 1.86799 * 120.00339 * 2 1 4 4 H 1.48493 * 109.47223 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46858 * 300.00239 * 3 2 1 6 6 H 1.48501 * 109.47012 * 60.00239 * 3 2 1 7 7 C 1.40094 * 119.99630 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99634 * 179.97438 * 7 2 1 9 9 C 1.41469 * 119.99793 * 359.97438 * 7 2 1 10 10 N 1.34283 * 120.64328 * 0.02562 * 9 7 2 11 11 C 1.31310 * 120.79689 * 179.97438 * 10 9 7 12 12 C 1.50698 * 118.89776 * 180.02562 * 11 10 9 13 13 C 1.52998 * 117.50273 * 188.74537 * 12 11 10 14 14 C 1.53000 * 117.49888 * 120.08138 * 12 11 10 15 15 N 1.32040 * 122.20791 * 359.97438 * 11 10 9 16 16 C 1.32955 * 121.19377 * 0.02562 * 15 11 10 17 17 N 1.38623 * 120.47374 * 180.26938 * 16 15 11 18 18 C 1.39685 * 119.04533 * 359.97438 * 16 15 11 19 19 Cl 1.73600 * 120.97974 * 180.02562 * 18 16 15 20 20 H 0.97002 * 119.99997 * 359.97438 * 1 2 3 21 21 H 1.09000 * 115.54672 * 334.41640 * 12 11 10 22 22 H 1.08997 * 117.49520 * 359.97438 * 13 12 11 23 23 H 1.08995 * 117.50549 * 145.01823 * 13 12 11 24 24 H 1.09000 * 117.49728 * 214.97815 * 14 12 11 25 25 H 1.08992 * 117.50394 * 359.97438 * 14 12 11 26 26 H 0.97001 * 119.99980 * 179.71800 * 17 16 15 27 27 H 0.97003 * 120.00222 * 359.72126 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6177 0.0000 4 1 3.7009 1.3463 -0.0006 5 1 1.8822 2.3964 -1.2125 6 1 1.8823 2.3964 1.2125 7 6 2.0073 -1.2133 -0.0005 8 1 3.0872 -1.2133 -0.0010 9 6 1.2998 -2.4384 -0.0005 10 7 -0.0429 -2.4533 -0.0005 11 6 -0.7026 -3.5887 -0.0010 12 6 -2.2092 -3.5555 -0.0016 13 6 -2.9452 -4.8809 0.2041 14 6 -2.9301 -4.2197 -1.1764 15 7 -0.0902 -4.7585 -0.0021 16 6 1.2368 -4.8410 -0.0021 17 7 1.8642 -6.0771 -0.0088 18 6 1.9895 -3.6643 -0.0016 19 17 3.7248 -3.7136 -0.0024 20 1 -0.4850 0.8401 0.0004 21 1 -2.6598 -2.6584 0.4231 22 1 -2.3396 -5.7770 0.3395 23 1 -3.8801 -4.8560 0.7639 24 1 -3.8551 -3.7600 -1.5242 25 1 -2.3146 -4.6804 -1.9491 26 1 2.8328 -6.1293 -0.0130 27 1 1.3347 -6.8899 -0.0094 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261087460.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:23 Heat of formation + Delta-G solvation = 36.765091 kcal Electronic energy + Delta-G solvation = -14621.655464 eV Core-core repulsion = 12018.957003 eV Total energy + Delta-G solvation = -2602.698461 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 239.052 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.98153 -37.91543 -36.82057 -36.45453 -34.96983 -32.54248 -30.74376 -28.04928 -25.31791 -23.57741 -23.05630 -21.69586 -19.44090 -18.76666 -17.56967 -16.78859 -16.26289 -15.99250 -15.81284 -15.42306 -15.03322 -14.59097 -13.16234 -13.07572 -12.94926 -12.76726 -12.69535 -12.26698 -12.24819 -11.96890 -11.59875 -11.50244 -11.35101 -10.99697 -10.84534 -9.97016 -9.35581 -8.75692 -8.37717 -6.76136 0.67959 1.16065 1.40889 1.56796 1.57266 1.86283 2.20050 2.73358 2.78749 3.15308 3.58490 3.85262 4.05515 4.19179 4.41524 4.63353 4.75740 4.85465 4.99413 5.13015 5.13899 5.34241 5.47090 5.70650 6.09410 6.39986 6.47911 6.74724 6.78375 7.36191 8.22659 8.34758 Molecular weight = 239.05amu Principal moments of inertia in cm(-1) A = 0.019520 B = 0.011266 C = 0.007289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.086987 B = 2484.833644 C = 3840.369222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.732 5.732 2 C 0.025 3.975 3 Si 0.988 3.012 4 H -0.255 1.255 5 H -0.262 1.262 6 H -0.262 1.262 7 C -0.431 4.431 8 H 0.097 0.903 9 C 0.264 3.736 10 N -0.553 5.553 11 C 0.355 3.645 12 C -0.108 4.108 13 C -0.136 4.136 14 C -0.147 4.147 15 N -0.652 5.652 16 C 0.442 3.558 17 N -0.835 5.835 18 C -0.334 4.334 19 Cl -0.089 7.089 20 H 0.285 0.715 21 H 0.113 0.887 22 H 0.094 0.906 23 H 0.120 0.880 24 H 0.120 0.880 25 H 0.076 0.924 26 H 0.410 0.590 27 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.018 -4.238 -0.352 4.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.352 5.352 2 C -0.200 4.200 3 Si 0.807 3.193 4 H -0.178 1.178 5 H -0.187 1.187 6 H -0.186 1.186 7 C -0.463 4.463 8 H 0.115 0.885 9 C 0.138 3.862 10 N -0.276 5.276 11 C 0.084 3.916 12 C -0.129 4.129 13 C -0.174 4.174 14 C -0.185 4.185 15 N -0.387 5.387 16 C 0.200 3.800 17 N -0.382 5.382 18 C -0.374 4.374 19 Cl -0.061 7.061 20 H 0.096 0.904 21 H 0.131 0.869 22 H 0.113 0.887 23 H 0.139 0.861 24 H 0.139 0.861 25 H 0.095 0.905 26 H 0.241 0.759 27 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -1.967 -4.003 -0.348 4.474 hybrid contribution 1.771 0.283 0.008 1.794 sum -0.196 -3.720 -0.340 3.740 Atomic orbital electron populations 1.70184 1.08895 1.29789 1.26366 1.27088 0.95800 1.04669 0.92413 0.85067 0.79419 0.75610 0.79176 1.17846 1.18664 1.18638 1.20126 0.95311 0.89695 1.41129 0.88476 1.18806 0.88145 0.91927 0.87338 1.69193 1.07099 1.27322 1.23999 1.22290 0.96281 0.83886 0.89189 1.20511 0.86132 0.98944 1.07280 1.22954 1.01201 0.94633 0.98600 1.22895 1.01513 1.02754 0.91345 1.67487 1.06763 1.29829 1.34633 1.18111 0.88432 0.85847 0.87560 1.41850 1.09342 1.03506 1.83496 1.21734 0.83703 0.95352 1.36573 1.98138 1.11329 1.98419 1.98248 0.90367 0.86935 0.88725 0.86136 0.86142 0.90547 0.75896 0.76304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -38.18 11.52 21.85 0.25 -37.93 15 2 C 0.03 1.26 5.50 85.31 0.47 1.73 15 3 Si 0.99 37.18 29.56 68.60 2.03 39.21 15 4 H -0.26 -9.39 7.11 99.48 0.71 -8.69 15 5 H -0.26 -9.42 7.11 99.48 0.71 -8.71 15 6 H -0.26 -9.40 7.11 99.48 0.71 -8.69 15 7 C -0.43 -23.22 8.88 23.52 0.21 -23.01 15 8 H 0.10 5.01 6.78 -2.91 -0.02 4.99 15 9 C 0.26 14.80 6.58 40.16 0.26 15.07 15 10 N -0.55 -31.06 7.93 -181.54 -1.44 -32.50 15 11 C 0.35 17.76 7.31 138.82 1.01 18.78 15 12 C -0.11 -4.37 6.22 -11.54 -0.07 -4.44 15 13 C -0.14 -4.23 10.01 30.62 0.31 -3.93 15 14 C -0.15 -4.74 10.24 30.62 0.31 -4.42 15 15 N -0.65 -30.85 9.34 -185.49 -1.73 -32.58 15 16 C 0.44 20.38 7.83 133.16 1.04 21.43 15 17 N -0.84 -29.11 9.03 -55.02 -0.50 -29.60 15 18 C -0.33 -16.81 6.45 23.21 0.15 -16.66 15 19 Cl -0.09 -3.76 26.36 -2.72 -0.07 -3.84 15 20 H 0.29 13.24 8.29 -92.71 -0.77 12.47 15 21 H 0.11 4.57 8.14 -2.39 -0.02 4.55 15 22 H 0.09 3.15 7.53 -2.39 -0.02 3.14 15 23 H 0.12 2.92 8.14 -2.39 -0.02 2.90 15 24 H 0.12 3.13 8.14 -2.39 -0.02 3.11 15 25 H 0.08 2.68 8.14 -2.39 -0.02 2.66 15 26 H 0.41 12.82 7.63 -92.71 -0.71 12.11 15 27 H 0.41 12.01 8.95 -92.71 -0.83 11.18 15 Total: -1.00 -63.60 255.82 1.93 -61.66 By element: Atomic # 1 Polarization: 31.33 SS G_CDS: -0.30 Total: 31.03 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 3.70 Total: 4.54 kcal Atomic # 7 Polarization: -129.19 SS G_CDS: -3.42 Total: -132.60 kcal Atomic # 14 Polarization: 37.18 SS G_CDS: 2.03 Total: 39.21 kcal Atomic # 17 Polarization: -3.76 SS G_CDS: -0.07 Total: -3.84 kcal Total: -63.60 1.93 -61.66 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261087460.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.429 kcal (2) G-P(sol) polarization free energy of solvation -63.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds