Wall clock time and date at job start Mon Mar 30 2020 03:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99999 * 2 1 4 4 H 1.48508 * 109.46770 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47404 * 300.00285 * 3 2 1 6 6 H 1.48503 * 109.47077 * 60.00665 * 3 2 1 7 7 C 1.37875 * 119.99660 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99843 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46993 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.47261 * 55.00015 * 10 9 7 12 12 O 1.42905 * 109.47264 * 294.99926 * 10 9 7 13 13 C 1.50699 * 109.47078 * 175.00050 * 10 9 7 14 14 N 1.28336 * 124.90724 * 74.69486 * 13 10 9 15 15 C 1.33484 * 117.83902 * 179.79408 * 14 13 10 16 16 C 1.33867 * 113.18132 * 0.53016 * 15 14 13 17 17 S 1.70752 * 124.90406 * 255.00002 * 13 10 9 18 18 C 1.51714 * 110.88975 * 179.65258 * 16 15 14 19 19 C 1.54298 * 104.81290 * 342.83773 * 18 16 15 20 20 C 1.52614 * 137.15113 * 180.27603 * 15 14 13 21 21 H 0.96996 * 119.99431 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47066 * 60.00228 * 9 7 2 23 23 H 1.09000 * 109.47067 * 299.99785 * 9 7 2 24 24 H 0.96702 * 113.99404 * 300.00214 * 12 10 9 25 25 H 1.08988 * 110.37516 * 101.65746 * 18 16 15 26 26 H 1.09000 * 110.36613 * 223.99245 * 18 16 15 27 27 H 1.09000 * 110.96310 * 268.04798 * 19 18 16 28 28 H 1.09009 * 111.00309 * 144.30714 * 19 18 16 29 29 H 1.09001 * 110.32071 * 316.60859 * 20 15 14 30 30 H 1.09000 * 110.32059 * 78.80328 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 1 2.9293 -3.5553 0.8413 12 8 2.9875 -3.6542 -1.2216 13 6 1.4957 -4.9637 0.1233 14 7 0.8229 -5.5163 -0.8196 15 6 0.2156 -6.6753 -0.5554 16 6 0.4004 -7.0922 0.7032 17 16 1.4129 -5.9125 1.5405 18 6 -0.3172 -8.4061 0.9488 19 6 -1.3316 -8.5237 -0.2079 20 6 -0.6553 -7.6788 -1.3062 21 1 -0.4849 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8897 24 1 2.4413 -3.7456 -2.0144 25 1 0.3891 -9.2356 0.9194 26 1 -0.8356 -8.3818 1.9073 27 1 -2.2951 -8.0987 0.0736 28 1 -1.4429 -9.5604 -0.5261 29 1 -1.4067 -7.1581 -1.8998 30 1 -0.0389 -8.3115 -1.9449 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261123292.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:12 Heat of formation + Delta-G solvation = -14.182823 kcal Electronic energy + Delta-G solvation = -14489.232169 eV Core-core repulsion = 11989.908490 eV Total energy + Delta-G solvation = -2499.323679 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.08343 -37.16840 -35.24090 -32.88864 -30.15254 -28.43480 -27.81055 -25.45127 -22.94019 -21.47567 -20.71286 -18.47502 -17.97354 -16.56934 -15.86997 -15.46609 -14.63417 -14.31022 -13.95176 -13.73674 -13.29624 -13.06149 -12.79075 -12.26610 -12.13764 -11.30516 -11.20575 -11.17826 -10.94856 -10.78800 -10.75344 -10.54309 -10.19879 -9.51734 -9.18962 -8.92932 -8.82761 -8.41561 -8.19113 -6.03062 -4.05628 1.05495 1.51702 2.12334 3.06534 3.32035 3.39432 3.45147 3.96971 4.45061 4.51088 4.77870 4.85154 5.25872 5.29907 5.37482 5.39763 5.54828 5.59485 5.70015 5.77467 5.92218 6.02055 6.15512 6.45144 6.51414 7.44406 7.59336 7.93587 8.08648 8.28398 8.41202 9.00575 9.58219 11.08357 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.044556 B = 0.005632 C = 0.005534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.275685 B = 4970.078965 C = 5058.559346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.513 4.513 8 H 0.064 0.936 9 C 0.006 3.994 10 C 0.186 3.814 11 H 0.107 0.893 12 O -0.544 6.544 13 C 0.058 3.942 14 N -0.468 5.468 15 C 0.049 3.951 16 C -0.272 4.272 17 S 0.124 5.876 18 C -0.033 4.033 19 C -0.116 4.116 20 C -0.039 4.039 21 H 0.261 0.739 22 H 0.030 0.970 23 H 0.026 0.974 24 H 0.377 0.623 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.294 -16.534 1.492 16.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.724 3.276 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.082 0.918 9 C -0.033 4.033 10 C 0.123 3.877 11 H 0.125 0.875 12 O -0.348 6.348 13 C -0.222 4.222 14 N -0.182 5.182 15 C -0.082 4.082 16 C -0.393 4.393 17 S 0.382 5.618 18 C -0.073 4.073 19 C -0.155 4.155 20 C -0.079 4.079 21 H 0.070 0.930 22 H 0.048 0.952 23 H 0.044 0.956 24 H 0.225 0.775 25 H 0.098 0.902 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.498 -15.951 2.425 16.142 hybrid contribution -0.647 0.519 -0.908 1.230 sum -1.144 -15.431 1.517 15.548 Atomic orbital electron populations 1.69992 1.06123 1.26665 1.50715 1.25017 0.94851 0.99393 0.95207 0.86455 0.80197 0.83380 0.77521 1.19532 1.21003 1.21050 1.21128 0.93386 0.89966 1.50657 0.91799 1.19759 0.93791 0.90971 0.98750 1.20973 0.92930 0.85568 0.88199 0.87498 1.86451 1.37185 1.95707 1.15489 1.28582 0.99973 1.02392 0.91247 1.65266 1.09950 1.09205 1.33781 1.21641 1.00543 0.92399 0.93617 1.26900 1.09268 1.04160 0.98925 1.83636 1.46369 1.14259 1.17497 1.20564 0.96219 0.91009 0.99489 1.22351 0.98396 1.00303 0.94470 1.20814 0.96653 0.93435 0.97016 0.92978 0.95192 0.95594 0.77512 0.90227 0.90723 0.90437 0.89792 0.90073 0.89837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 13.29 55.43 0.74 -26.23 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 7 C -0.51 -14.48 8.88 -34.44 -0.31 -14.79 16 8 H 0.06 1.78 7.74 -52.48 -0.41 1.38 16 9 C 0.01 0.16 4.64 -27.88 -0.13 0.03 16 10 C 0.19 4.04 3.42 -27.88 -0.10 3.94 16 11 H 0.11 2.22 8.14 -51.93 -0.42 1.79 16 12 O -0.54 -11.77 13.08 -35.23 -0.46 -12.23 16 13 C 0.06 1.16 6.26 -13.74 -0.09 1.07 16 14 N -0.47 -9.29 10.37 -7.24 -0.08 -9.37 16 15 C 0.05 0.82 7.70 -82.45 -0.63 0.18 16 16 C -0.27 -4.13 7.42 -35.34 -0.26 -4.39 16 17 S 0.12 2.04 23.18 -107.50 -2.49 -0.45 16 18 C -0.03 -0.35 6.80 -26.70 -0.18 -0.53 16 19 C -0.12 -1.06 7.12 -25.43 -0.18 -1.24 16 20 C -0.04 -0.47 6.81 -26.30 -0.18 -0.65 16 21 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 22 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.38 7.50 8.90 45.56 0.41 7.91 16 25 H 0.08 0.73 8.14 -51.94 -0.42 0.30 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 273.50 15.07 4.12 4.12 Total: -1.00 -32.07 273.50 -8.28 -40.35 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -2.94 Total: 1.88 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: -2.15 Total: -14.84 kcal Atomic # 7 Polarization: -36.25 SS G_CDS: 0.66 Total: -35.59 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -0.46 Total: -12.23 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -2.49 Total: -0.45 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -32.07 -8.28 -40.35 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261123292.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.169 kcal (2) G-P(sol) polarization free energy of solvation -32.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds