Wall clock time and date at job start Mon Mar 30 2020 03:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99999 * 2 1 4 4 H 1.48508 * 109.46770 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47404 * 300.00285 * 3 2 1 6 6 H 1.48503 * 109.47077 * 60.00665 * 3 2 1 7 7 C 1.37875 * 119.99660 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99843 * 179.97438 * 7 2 1 9 9 C 1.50708 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.46993 * 180.02562 * 9 7 2 11 11 H 1.09004 * 109.47261 * 55.00015 * 10 9 7 12 12 O 1.42905 * 109.47264 * 294.99926 * 10 9 7 13 13 C 1.50699 * 109.47078 * 175.00050 * 10 9 7 14 14 N 1.28336 * 124.90724 * 74.69486 * 13 10 9 15 15 C 1.33484 * 117.83902 * 179.79408 * 14 13 10 16 16 C 1.33867 * 113.18132 * 0.53016 * 15 14 13 17 17 S 1.70752 * 124.90406 * 255.00002 * 13 10 9 18 18 C 1.51714 * 110.88975 * 179.65258 * 16 15 14 19 19 C 1.54298 * 104.81290 * 342.83773 * 18 16 15 20 20 C 1.52614 * 137.15113 * 180.27603 * 15 14 13 21 21 H 0.96996 * 119.99431 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.47066 * 60.00228 * 9 7 2 23 23 H 1.09000 * 109.47067 * 299.99785 * 9 7 2 24 24 H 0.96702 * 113.99404 * 300.00214 * 12 10 9 25 25 H 1.08988 * 110.37516 * 101.65746 * 18 16 15 26 26 H 1.09000 * 110.36613 * 223.99245 * 18 16 15 27 27 H 1.09000 * 110.96310 * 268.04798 * 19 18 16 28 28 H 1.09009 * 111.00309 * 144.30714 * 19 18 16 29 29 H 1.09001 * 110.32071 * 316.60859 * 20 15 14 30 30 H 1.09000 * 110.32059 * 78.80328 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 1 2.9293 -3.5553 0.8413 12 8 2.9875 -3.6542 -1.2216 13 6 1.4957 -4.9637 0.1233 14 7 0.8229 -5.5163 -0.8196 15 6 0.2156 -6.6753 -0.5554 16 6 0.4004 -7.0922 0.7032 17 16 1.4129 -5.9125 1.5405 18 6 -0.3172 -8.4061 0.9488 19 6 -1.3316 -8.5237 -0.2079 20 6 -0.6553 -7.6788 -1.3062 21 1 -0.4849 0.8401 0.0004 22 1 0.6240 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8897 24 1 2.4413 -3.7456 -2.0144 25 1 0.3891 -9.2356 0.9194 26 1 -0.8356 -8.3818 1.9073 27 1 -2.2951 -8.0987 0.0736 28 1 -1.4429 -9.5604 -0.5261 29 1 -1.4067 -7.1581 -1.8998 30 1 -0.0389 -8.3115 -1.9449 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261123292.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:12 Heat of formation + Delta-G solvation = -37.011523 kcal Electronic energy + Delta-G solvation = -14490.222096 eV Core-core repulsion = 11989.908490 eV Total energy + Delta-G solvation = -2500.313605 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.33246 -38.71104 -36.52461 -35.03989 -32.00467 -29.44438 -29.22482 -27.09576 -24.70856 -22.86009 -21.94977 -19.84520 -19.33757 -18.47219 -17.41112 -16.72649 -16.52470 -15.99701 -15.48284 -14.97522 -14.81164 -14.24919 -14.16870 -13.71057 -13.33489 -13.09901 -12.80844 -12.58284 -12.51809 -12.17931 -12.11148 -12.08871 -11.87528 -11.34146 -11.15832 -10.63661 -10.38767 -10.20454 -9.48633 -8.23555 -6.34837 -0.28180 0.22934 0.79082 1.40342 1.41132 1.55374 1.73060 2.39839 2.76264 3.09541 3.57831 3.58855 3.69903 4.07172 4.15075 4.31192 4.53049 4.54616 4.66399 4.76332 4.87632 4.94423 5.11064 5.24094 5.28565 5.30644 5.46781 5.71921 6.11611 6.65092 6.76930 6.79930 7.34155 8.88720 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.044556 B = 0.005632 C = 0.005534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.275685 B = 4970.078965 C = 5058.559346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.970 3.030 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.276 1.276 7 C -0.531 4.531 8 H 0.064 0.936 9 C 0.018 3.982 10 C 0.198 3.802 11 H 0.114 0.886 12 O -0.550 6.550 13 C 0.014 3.986 14 N -0.492 5.492 15 C 0.009 3.991 16 C -0.259 4.259 17 S 0.154 5.846 18 C -0.034 4.034 19 C -0.104 4.104 20 C -0.040 4.040 21 H 0.264 0.736 22 H -0.003 1.003 23 H 0.002 0.998 24 H 0.382 0.618 25 H 0.104 0.896 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.121 0.879 29 H 0.077 0.923 30 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.250 -18.238 2.053 18.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.794 3.206 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.201 1.201 7 C -0.569 4.569 8 H 0.083 0.917 9 C -0.021 4.021 10 C 0.135 3.865 11 H 0.131 0.869 12 O -0.355 6.355 13 C -0.265 4.265 14 N -0.207 5.207 15 C -0.121 4.121 16 C -0.380 4.380 17 S 0.412 5.588 18 C -0.074 4.074 19 C -0.143 4.143 20 C -0.080 4.080 21 H 0.073 0.927 22 H 0.016 0.984 23 H 0.020 0.980 24 H 0.230 0.770 25 H 0.122 0.878 26 H 0.110 0.890 27 H 0.098 0.902 28 H 0.139 0.861 29 H 0.096 0.904 30 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.444 -17.660 2.983 17.916 hybrid contribution -0.717 0.935 -1.065 1.589 sum -1.161 -16.725 1.918 16.874 Atomic orbital electron populations 1.70120 1.07879 1.27868 1.51571 1.25970 0.95729 1.03409 0.94532 0.85322 0.79055 0.78402 0.77807 1.18564 1.20462 1.20105 1.21474 0.93593 0.91219 1.50593 0.91737 1.19523 0.93941 0.92721 0.95931 1.20548 0.91968 0.85621 0.88339 0.86868 1.86402 1.37466 1.95833 1.15831 1.27974 1.02027 1.03050 0.93473 1.65227 1.09971 1.10693 1.34834 1.22460 1.01793 0.92299 0.95518 1.27697 1.07204 1.05084 0.97985 1.83365 1.46308 1.13821 1.15339 1.20871 0.96721 0.88826 1.00955 1.22414 0.97563 1.01837 0.92449 1.21053 0.96203 0.92776 0.97940 0.92678 0.98425 0.97982 0.77004 0.87764 0.89049 0.90178 0.86059 0.90436 0.88289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.63 13.29 21.45 0.28 -57.35 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.97 45.03 29.54 68.60 2.03 47.05 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 6 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.53 -30.75 8.88 25.60 0.23 -30.53 16 8 H 0.06 3.65 7.74 -2.91 -0.02 3.63 16 9 C 0.02 0.97 4.64 29.85 0.14 1.11 16 10 C 0.20 8.91 3.42 29.85 0.10 9.01 16 11 H 0.11 4.84 8.14 -2.38 -0.02 4.82 16 12 O -0.55 -24.58 13.08 -148.98 -1.95 -26.53 16 13 C 0.01 0.57 6.26 88.62 0.55 1.12 16 14 N -0.49 -19.98 10.37 -176.80 -1.83 -21.81 16 15 C 0.01 0.30 7.70 41.93 0.32 0.63 16 16 C -0.26 -7.37 7.42 25.02 0.19 -7.18 16 17 S 0.15 4.98 23.18 -56.49 -1.31 3.67 16 18 C -0.03 -0.59 6.80 30.61 0.21 -0.38 16 19 C -0.10 -1.48 7.12 31.44 0.22 -1.25 16 20 C -0.04 -0.87 6.81 30.87 0.21 -0.66 16 21 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 22 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 23 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 24 H 0.38 15.95 8.90 -74.06 -0.66 15.29 16 25 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.12 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -71.14 273.50 0.35 -70.79 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.49 Total: 11.76 kcal Atomic # 6 Polarization: -30.22 SS G_CDS: 2.64 Total: -27.59 kcal Atomic # 7 Polarization: -77.61 SS G_CDS: -1.55 Total: -79.15 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -1.95 Total: -26.53 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: 4.98 SS G_CDS: -1.31 Total: 3.67 kcal Total: -71.14 0.35 -70.79 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261123292.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.776 kcal (2) G-P(sol) polarization free energy of solvation -71.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds