Wall clock time and date at job start Mon Mar 30 2020 03:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46893 * 111.00439 * 2 1 4 4 C 1.50700 * 109.47305 * 66.04415 * 3 2 1 5 5 H 1.08001 * 119.99763 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00090 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99876 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 120.00184 * 0.02562 * 6 4 3 9 9 H 1.48495 * 109.46989 * 89.99969 * 8 6 4 10 10 H 1.48501 * 109.47077 * 210.00424 * 8 6 4 11 11 H 1.48506 * 109.46920 * 329.99853 * 8 6 4 12 12 C 1.46904 * 110.99735 * 236.04564 * 2 1 3 13 13 H 1.09005 * 109.59542 * 179.14622 * 12 2 1 14 14 C 1.52875 * 109.53494 * 58.95637 * 12 2 1 15 15 C 1.52139 * 112.14314 * 176.04062 * 14 12 2 16 16 N 1.47114 * 110.66244 * 62.33679 * 15 14 12 17 17 C 1.44468 * 116.72272 * 36.05776 * 16 15 14 18 18 C 1.51024 * 112.28198 * 292.81095 * 17 16 15 19 19 C 1.51836 * 112.53242 * 343.54080 * 18 17 16 20 20 C 1.52228 * 113.26773 * 322.75885 * 19 18 17 21 21 C 1.46935 * 110.01675 * 264.92562 * 16 15 14 22 22 H 1.09001 * 109.47693 * 183.95206 * 1 2 3 23 23 H 1.09003 * 109.47102 * 303.95652 * 1 2 3 24 24 H 1.08999 * 109.46984 * 63.95525 * 1 2 3 25 25 H 1.09000 * 109.47202 * 186.04702 * 3 2 1 26 26 H 1.08999 * 109.47171 * 306.04547 * 3 2 1 27 27 H 0.96999 * 119.99726 * 180.02562 * 7 6 4 28 28 H 1.09002 * 108.93349 * 55.37912 * 14 12 2 29 29 H 1.08998 * 108.93174 * 296.69942 * 14 12 2 30 30 H 1.08998 * 109.23716 * 182.64585 * 15 14 12 31 31 H 1.08998 * 109.23743 * 302.03172 * 15 14 12 32 32 H 1.09003 * 108.86344 * 53.13891 * 17 16 15 33 33 H 1.08999 * 108.86318 * 171.55054 * 17 16 15 34 34 H 1.08996 * 107.91513 * 223.27023 * 18 17 16 35 35 H 1.09002 * 109.49714 * 104.88781 * 18 17 16 36 36 H 1.09005 * 108.19442 * 202.79761 * 19 18 17 37 37 H 1.09000 * 108.71156 * 288.99095 * 20 19 18 38 38 H 1.08994 * 108.71429 * 170.96759 * 20 19 18 39 39 H 1.09005 * 109.00512 * 204.68898 * 21 16 15 40 40 H 1.09001 * 109.00529 * 323.55243 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0269 3.3494 1.5284 7 7 1.7145 3.9390 2.6618 8 14 2.9990 4.2765 0.2303 9 1 2.0616 4.9802 -0.6813 10 1 3.8858 5.2681 0.8903 11 1 3.8225 3.3180 -0.5498 12 6 1.9954 -0.7660 -1.1376 13 1 3.0850 -0.7385 -1.1241 14 6 1.4849 -0.1574 -2.4438 15 6 2.0723 -0.8472 -3.6660 16 7 1.6726 -2.2624 -3.7055 17 6 0.3414 -2.5748 -3.2393 18 6 0.1832 -2.3361 -1.7565 19 6 1.5170 -2.2169 -1.0408 20 6 2.5796 -3.1593 -1.5884 21 6 2.7169 -3.0971 -3.0956 22 1 -0.3634 -1.0252 0.0708 23 1 -0.3633 0.5740 0.8524 24 1 -0.3633 0.4512 -0.9233 25 1 3.0798 1.3442 -0.1083 26 1 1.5612 1.9273 -0.8309 27 1 1.9885 4.8553 2.8234 28 1 1.7533 0.8987 -2.4705 29 1 0.3990 -0.2468 -2.4750 30 1 1.7151 -0.3477 -4.5665 31 1 3.1596 -0.7819 -3.6272 32 1 -0.3744 -1.9481 -3.7713 33 1 0.1260 -3.6197 -3.4625 34 1 -0.3693 -3.1776 -1.3385 35 1 -0.3890 -1.4227 -1.5940 36 1 1.3609 -2.4540 0.0116 37 1 2.3233 -4.1794 -1.3023 38 1 3.5391 -2.9034 -1.1390 39 1 2.6459 -4.1067 -3.5006 40 1 3.6935 -2.6826 -3.3453 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261144070.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:15 Heat of formation + Delta-G solvation = 22.346027 kcal Electronic energy + Delta-G solvation = -18575.135686 eV Core-core repulsion = 16004.027997 eV Total energy + Delta-G solvation = -2571.107689 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 238.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.89333 -36.62917 -33.06641 -32.52451 -31.42129 -30.95405 -27.75884 -26.13568 -24.68245 -23.32820 -22.98936 -20.91067 -19.15873 -17.96427 -16.99738 -16.56078 -15.93374 -15.09230 -14.44009 -14.22737 -13.87987 -13.44156 -13.26962 -13.14876 -12.86566 -12.54676 -12.32857 -12.23225 -12.10022 -11.55689 -11.13573 -10.96157 -10.70913 -10.68459 -10.65953 -10.43149 -10.36058 -10.02050 -9.85163 -9.62537 -9.25828 -8.58644 -8.02319 -7.32147 -6.06247 -4.03256 3.26415 3.34331 3.36214 4.02462 4.40705 4.65688 4.76404 4.83293 5.13361 5.21437 5.24262 5.26600 5.28193 5.40557 5.42883 5.58457 5.67530 5.75182 5.90156 5.94841 6.01718 6.07043 6.10069 6.11859 6.14952 6.18450 6.29684 6.40703 6.47802 6.65151 6.74071 6.87639 7.00654 7.21618 7.42352 7.60563 7.92168 8.06539 8.65969 9.02360 9.55713 11.06986 Molecular weight = 238.17amu Principal moments of inertia in cm(-1) A = 0.038216 B = 0.007066 C = 0.006627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.495814 B = 3961.750392 C = 4224.351718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.522 5.522 3 C 0.162 3.838 4 C -0.509 4.509 5 H 0.080 0.920 6 C 0.068 3.932 7 N -0.901 5.901 8 Si 0.875 3.125 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.267 1.267 12 C 0.089 3.911 13 H 0.072 0.928 14 C -0.193 4.193 15 C 0.076 3.924 16 N -0.561 5.561 17 C 0.082 3.918 18 C -0.162 4.162 19 C -0.076 4.076 20 C -0.140 4.140 21 C 0.066 3.934 22 H 0.055 0.945 23 H 0.076 0.924 24 H 0.014 0.986 25 H 0.025 0.975 26 H -0.015 1.015 27 H 0.263 0.737 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.385 -12.970 -12.463 17.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.244 5.244 3 C 0.036 3.964 4 C -0.547 4.547 5 H 0.098 0.902 6 C -0.134 4.134 7 N -0.540 5.540 8 Si 0.702 3.298 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.192 1.192 12 C -0.020 4.020 13 H 0.091 0.909 14 C -0.233 4.233 15 C -0.052 4.052 16 N -0.283 5.283 17 C -0.046 4.046 18 C -0.201 4.201 19 C -0.095 4.095 20 C -0.180 4.180 21 C -0.062 4.062 22 H 0.074 0.926 23 H 0.095 0.905 24 H 0.033 0.967 25 H 0.043 0.957 26 H 0.003 0.997 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.239 -13.117 -12.353 18.020 hybrid contribution 0.242 1.337 -0.422 1.423 sum 0.003 -11.780 -12.776 17.378 Atomic orbital electron populations 1.22474 0.88894 1.00153 1.00583 1.62281 1.07211 1.16393 1.38490 1.20174 0.95042 0.84341 0.96872 1.21054 1.35481 0.97182 1.00983 0.90196 1.24901 0.95769 0.97374 0.95310 1.69896 1.46968 1.13228 1.23901 0.86871 0.80663 0.80067 0.82207 1.20383 1.21118 1.19206 1.21792 0.99077 0.92734 0.88411 0.90939 1.22820 1.02349 1.01267 0.96848 1.21883 0.99744 0.86728 0.96873 1.59654 1.02218 1.06392 1.60042 1.20954 0.89437 1.00853 0.93365 1.22028 0.98147 1.02816 0.97138 1.20625 0.93974 0.94492 1.00439 1.21610 0.99529 0.99544 0.97311 1.21813 0.94458 0.97681 0.92250 0.92636 0.90506 0.96732 0.95662 0.99700 0.92680 0.91533 0.90932 0.91516 0.91420 0.91627 0.91433 0.92624 0.89968 0.90217 0.92318 0.91647 0.91570 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 7.69 60.06 0.46 0.98 16 2 N -0.52 -10.89 4.64 -236.37 -1.10 -11.98 16 3 C 0.16 3.94 3.23 -4.98 -0.02 3.93 16 4 C -0.51 -14.56 9.01 -34.44 -0.31 -14.87 16 5 H 0.08 2.49 7.37 -52.49 -0.39 2.10 16 6 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 7 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 8 Si 0.87 21.68 27.47 -169.99 -4.67 17.01 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 12 C 0.09 1.52 2.12 -67.74 -0.14 1.37 16 13 H 0.07 1.29 7.53 -51.93 -0.39 0.90 16 14 C -0.19 -3.00 3.99 -27.23 -0.11 -3.11 16 15 C 0.08 0.99 6.05 -4.15 -0.03 0.97 16 16 N -0.56 -6.94 4.62 -239.21 -1.11 -8.04 16 17 C 0.08 0.97 5.38 -6.12 -0.03 0.94 16 18 C -0.16 -2.08 4.18 -28.32 -0.12 -2.20 16 19 C -0.08 -1.08 1.99 -91.57 -0.18 -1.27 16 20 C -0.14 -1.70 5.34 -27.89 -0.15 -1.85 16 21 C 0.07 0.74 5.95 -4.57 -0.03 0.72 16 22 H 0.06 0.92 5.50 -51.93 -0.29 0.64 16 23 H 0.08 1.66 6.76 -51.93 -0.35 1.31 16 24 H 0.01 0.27 6.12 -51.93 -0.32 -0.05 16 25 H 0.03 0.63 7.07 -51.93 -0.37 0.27 16 26 H -0.01 -0.36 6.25 -51.93 -0.32 -0.68 16 27 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 28 H 0.07 1.16 6.50 -51.93 -0.34 0.83 16 29 H 0.07 1.13 4.03 -51.93 -0.21 0.92 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.86 7.18 -51.93 -0.37 0.49 16 32 H 0.07 0.76 8.06 -51.93 -0.42 0.34 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 1.15 3.55 -51.93 -0.18 0.96 16 36 H 0.08 1.26 7.76 -51.93 -0.40 0.86 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.81 7.84 -51.93 -0.41 0.40 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.74 7.30 -51.93 -0.38 0.36 16 LS Contribution 279.67 15.07 4.21 4.21 Total: -1.00 -29.94 279.67 -9.05 -38.99 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -6.42 Total: -0.69 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: -0.75 Total: -12.51 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: -1.43 Total: -47.01 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.67 Total: 17.01 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.94 -9.05 -38.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261144070.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.334 kcal (2) G-P(sol) polarization free energy of solvation -29.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds