Wall clock time and date at job start Mon Mar 30 2020 03:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46893 * 111.00439 * 2 1 4 4 C 1.50700 * 109.47305 * 66.04415 * 3 2 1 5 5 H 1.08001 * 119.99763 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00090 * 180.02562 * 4 3 2 7 7 N 1.31519 * 119.99876 * 180.02562 * 6 4 3 8 8 Si 1.86800 * 120.00184 * 0.02562 * 6 4 3 9 9 H 1.48495 * 109.46989 * 89.99969 * 8 6 4 10 10 H 1.48501 * 109.47077 * 210.00424 * 8 6 4 11 11 H 1.48506 * 109.46920 * 329.99853 * 8 6 4 12 12 C 1.46904 * 110.99735 * 236.04564 * 2 1 3 13 13 H 1.09005 * 109.59542 * 179.14622 * 12 2 1 14 14 C 1.52875 * 109.53494 * 58.95637 * 12 2 1 15 15 C 1.52139 * 112.14314 * 176.04062 * 14 12 2 16 16 N 1.47114 * 110.66244 * 62.33679 * 15 14 12 17 17 C 1.44468 * 116.72272 * 36.05776 * 16 15 14 18 18 C 1.51024 * 112.28198 * 292.81095 * 17 16 15 19 19 C 1.51836 * 112.53242 * 343.54080 * 18 17 16 20 20 C 1.52228 * 113.26773 * 322.75885 * 19 18 17 21 21 C 1.46935 * 110.01675 * 264.92562 * 16 15 14 22 22 H 1.09001 * 109.47693 * 183.95206 * 1 2 3 23 23 H 1.09003 * 109.47102 * 303.95652 * 1 2 3 24 24 H 1.08999 * 109.46984 * 63.95525 * 1 2 3 25 25 H 1.09000 * 109.47202 * 186.04702 * 3 2 1 26 26 H 1.08999 * 109.47171 * 306.04547 * 3 2 1 27 27 H 0.96999 * 119.99726 * 180.02562 * 7 6 4 28 28 H 1.09002 * 108.93349 * 55.37912 * 14 12 2 29 29 H 1.08998 * 108.93174 * 296.69942 * 14 12 2 30 30 H 1.08998 * 109.23716 * 182.64585 * 15 14 12 31 31 H 1.08998 * 109.23743 * 302.03172 * 15 14 12 32 32 H 1.09003 * 108.86344 * 53.13891 * 17 16 15 33 33 H 1.08999 * 108.86318 * 171.55054 * 17 16 15 34 34 H 1.08996 * 107.91513 * 223.27023 * 18 17 16 35 35 H 1.09002 * 109.49714 * 104.88781 * 18 17 16 36 36 H 1.09005 * 108.19442 * 202.79761 * 19 18 17 37 37 H 1.09000 * 108.71156 * 288.99095 * 20 19 18 38 38 H 1.08994 * 108.71429 * 170.96759 * 20 19 18 39 39 H 1.09005 * 109.00512 * 204.68898 * 21 16 15 40 40 H 1.09001 * 109.00529 * 323.55243 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0269 3.3494 1.5284 7 7 1.7145 3.9390 2.6618 8 14 2.9990 4.2765 0.2303 9 1 2.0616 4.9802 -0.6813 10 1 3.8858 5.2681 0.8903 11 1 3.8225 3.3180 -0.5498 12 6 1.9954 -0.7660 -1.1376 13 1 3.0850 -0.7385 -1.1241 14 6 1.4849 -0.1574 -2.4438 15 6 2.0723 -0.8472 -3.6660 16 7 1.6726 -2.2624 -3.7055 17 6 0.3414 -2.5748 -3.2393 18 6 0.1832 -2.3361 -1.7565 19 6 1.5170 -2.2169 -1.0408 20 6 2.5796 -3.1593 -1.5884 21 6 2.7169 -3.0971 -3.0956 22 1 -0.3634 -1.0252 0.0708 23 1 -0.3633 0.5740 0.8524 24 1 -0.3633 0.4512 -0.9233 25 1 3.0798 1.3442 -0.1083 26 1 1.5612 1.9273 -0.8309 27 1 1.9885 4.8553 2.8234 28 1 1.7533 0.8987 -2.4705 29 1 0.3990 -0.2468 -2.4750 30 1 1.7151 -0.3477 -4.5665 31 1 3.1596 -0.7819 -3.6272 32 1 -0.3744 -1.9481 -3.7713 33 1 0.1260 -3.6197 -3.4625 34 1 -0.3693 -3.1776 -1.3385 35 1 -0.3890 -1.4227 -1.5940 36 1 1.3609 -2.4540 0.0116 37 1 2.3233 -4.1794 -1.3023 38 1 3.5391 -2.9034 -1.1390 39 1 2.6459 -4.1067 -3.5006 40 1 3.6935 -2.6826 -3.3453 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261144070.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:15 Heat of formation + Delta-G solvation = 0.806515 kcal Electronic energy + Delta-G solvation = -18576.069709 eV Core-core repulsion = 16004.027997 eV Total energy + Delta-G solvation = -2572.041712 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 238.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.03966 -38.10387 -34.87900 -33.89997 -32.56945 -32.24240 -29.67251 -27.61480 -25.81882 -24.82294 -24.03208 -22.54653 -20.50461 -19.26675 -18.81168 -17.72827 -17.26693 -16.43928 -16.09666 -15.81391 -15.28917 -14.88284 -14.46714 -14.44908 -14.28652 -13.96372 -13.70399 -13.48940 -13.26110 -13.12278 -12.83780 -12.60630 -12.33514 -11.93641 -11.82617 -11.77037 -11.65790 -11.58715 -11.48062 -11.10680 -10.85628 -10.80716 -9.09561 -8.88557 -8.32165 -6.35436 1.29846 1.31929 1.42822 2.30359 3.00412 3.07097 3.22049 3.62907 3.73255 4.03388 4.15747 4.20324 4.26219 4.29837 4.40686 4.44603 4.54190 4.57562 4.61575 4.66280 4.73682 4.82996 4.93293 5.01166 5.04156 5.08094 5.11706 5.15708 5.19135 5.23166 5.33279 5.36121 5.49476 5.55545 5.98333 6.26121 6.35223 6.47996 6.65225 6.71001 7.28259 8.84590 Molecular weight = 238.17amu Principal moments of inertia in cm(-1) A = 0.038216 B = 0.007066 C = 0.006627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.495814 B = 3961.750392 C = 4224.351718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.541 5.541 3 C 0.176 3.824 4 C -0.518 4.518 5 H 0.037 0.963 6 C 0.008 3.992 7 N -0.947 5.947 8 Si 0.946 3.054 9 H -0.267 1.267 10 H -0.279 1.279 11 H -0.251 1.251 12 C 0.089 3.911 13 H 0.062 0.938 14 C -0.185 4.185 15 C 0.080 3.920 16 N -0.561 5.561 17 C 0.083 3.917 18 C -0.160 4.160 19 C -0.071 4.071 20 C -0.136 4.136 21 C 0.066 3.934 22 H 0.082 0.918 23 H 0.041 0.959 24 H 0.022 0.978 25 H 0.021 0.979 26 H -0.013 1.013 27 H 0.267 0.733 28 H 0.045 0.955 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.085 0.915 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.223 -14.310 -15.158 20.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.263 5.263 3 C 0.049 3.951 4 C -0.556 4.556 5 H 0.055 0.945 6 C -0.189 4.189 7 N -0.588 5.588 8 Si 0.769 3.231 9 H -0.192 1.192 10 H -0.204 1.204 11 H -0.175 1.175 12 C -0.020 4.020 13 H 0.081 0.919 14 C -0.225 4.225 15 C -0.048 4.048 16 N -0.283 5.283 17 C -0.045 4.045 18 C -0.198 4.198 19 C -0.091 4.091 20 C -0.176 4.176 21 C -0.062 4.062 22 H 0.100 0.900 23 H 0.060 0.940 24 H 0.041 0.959 25 H 0.040 0.960 26 H 0.005 0.995 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.103 0.897 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.364 -14.488 -15.062 20.902 hybrid contribution -0.005 1.676 0.510 1.752 sum 0.359 -12.812 -14.552 19.391 Atomic orbital electron populations 1.22378 0.88053 1.01261 0.99346 1.62173 1.08117 1.14645 1.41370 1.19864 0.94707 0.86137 0.94368 1.21292 1.34882 0.97548 1.01923 0.94514 1.25842 0.96931 0.98409 0.97712 1.70049 1.48569 1.13888 1.26284 0.85733 0.79316 0.78749 0.79281 1.19227 1.20417 1.17489 1.21876 0.98423 0.93954 0.87751 0.91927 1.22747 1.02434 1.00102 0.97222 1.21860 0.99910 0.87263 0.95738 1.59717 1.02732 1.05745 1.60070 1.21008 0.89218 1.02088 0.92207 1.21976 0.96980 1.02715 0.98169 1.20588 0.95617 0.92926 0.99924 1.21578 0.98320 0.99606 0.98069 1.21895 0.94421 0.98565 0.91318 0.89954 0.94005 0.95930 0.96046 0.99502 0.92376 0.93659 0.90908 0.90507 0.90953 0.91335 0.89559 0.91159 0.91412 0.92082 0.90731 0.92195 0.89666 0.90889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.46 7.69 127.69 0.98 2.44 16 2 N -0.54 -22.81 4.64 -901.72 -4.18 -26.99 16 3 C 0.18 8.68 3.23 85.56 0.28 8.95 16 4 C -0.52 -30.73 9.01 25.60 0.23 -30.49 16 5 H 0.04 2.43 7.37 -2.91 -0.02 2.41 16 6 C 0.01 0.50 5.47 84.65 0.46 0.96 16 7 N -0.95 -60.09 13.96 21.45 0.30 -59.79 16 8 Si 0.95 44.83 27.47 68.60 1.88 46.71 16 9 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.25 -11.15 6.54 99.48 0.65 -10.50 16 12 C 0.09 2.93 2.12 44.90 0.10 3.02 16 13 H 0.06 2.18 7.53 -2.38 -0.02 2.16 16 14 C -0.18 -5.48 3.99 30.27 0.12 -5.36 16 15 C 0.08 1.90 6.05 85.98 0.52 2.42 16 16 N -0.56 -11.92 4.62 -910.72 -4.21 -16.13 16 17 C 0.08 1.66 5.38 86.11 0.46 2.13 16 18 C -0.16 -3.68 4.18 29.57 0.12 -3.55 16 19 C -0.07 -1.91 1.99 -11.41 -0.02 -1.93 16 20 C -0.14 -2.93 5.34 29.84 0.16 -2.77 16 21 C 0.07 1.25 5.95 85.80 0.51 1.76 16 22 H 0.08 2.71 5.50 -2.39 -0.01 2.70 16 23 H 0.04 1.89 6.76 -2.39 -0.02 1.87 16 24 H 0.02 0.83 6.12 -2.39 -0.01 0.81 16 25 H 0.02 1.07 7.07 -2.39 -0.02 1.05 16 26 H -0.01 -0.61 6.25 -2.39 -0.01 -0.63 16 27 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 28 H 0.04 1.53 6.50 -2.39 -0.02 1.51 16 29 H 0.07 2.15 4.03 -2.39 -0.01 2.14 16 30 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.07 1.65 7.18 -2.39 -0.02 1.63 16 32 H 0.07 1.36 8.06 -2.39 -0.02 1.34 16 33 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.07 1.76 3.55 -2.39 -0.01 1.75 16 36 H 0.06 1.87 7.76 -2.38 -0.02 1.85 16 37 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.06 1.36 7.84 -2.39 -0.02 1.34 16 39 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 40 H 0.07 1.33 7.30 -2.39 -0.02 1.32 16 Total: -1.00 -65.93 279.67 -1.33 -67.26 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.96 Total: 11.37 kcal Atomic # 6 Polarization: -26.35 SS G_CDS: 3.92 Total: -22.42 kcal Atomic # 7 Polarization: -94.82 SS G_CDS: -8.09 Total: -102.91 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.88 Total: 46.71 kcal Total: -65.93 -1.33 -67.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261144070.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.065 kcal (2) G-P(sol) polarization free energy of solvation -65.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds