Wall clock time and date at job start Mon Mar 30 2020 04:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 S 1.75878 * 125.20480 * 2 1 4 4 C 1.75884 * 90.97033 * 180.02562 * 3 2 1 5 5 C 1.33386 * 109.59706 * 0.02562 * 4 3 2 6 6 C 1.33394 * 125.20048 * 180.02562 * 2 1 3 7 7 C 1.50699 * 122.53859 * 359.70222 * 6 2 1 8 8 C 1.50697 * 109.46946 * 85.00349 * 7 6 2 9 9 O 1.21275 * 120.00211 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99736 * 179.97438 * 8 7 6 11 11 C 1.46502 * 119.99816 * 180.02562 * 10 8 7 12 12 C 1.50704 * 109.47375 * 179.97438 * 11 10 8 13 13 H 1.08004 * 119.99939 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00529 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99539 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00438 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47266 * 89.99913 * 16 14 12 18 18 H 1.48500 * 109.47552 * 210.00425 * 16 14 12 19 19 H 1.48500 * 109.46970 * 330.00055 * 16 14 12 20 20 H 1.09006 * 109.46630 * 269.97038 * 1 2 3 21 21 H 1.09002 * 109.46774 * 29.96908 * 1 2 3 22 22 H 1.08994 * 109.47373 * 149.97223 * 1 2 3 23 23 H 1.08002 * 125.20650 * 180.02562 * 4 3 2 24 24 H 1.07999 * 122.54538 * 180.02562 * 5 4 3 25 25 H 1.09002 * 109.47229 * 205.00733 * 7 6 2 26 26 H 1.08999 * 109.47288 * 325.00551 * 7 6 2 27 27 H 0.97000 * 120.00344 * 0.02562 * 10 8 7 28 28 H 1.09003 * 109.47561 * 299.99955 * 11 10 8 29 29 H 1.09004 * 109.47363 * 60.00066 * 11 10 8 30 30 H 0.97006 * 119.99640 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5210 1.4371 0.0000 4 6 3.9751 0.4476 -0.0008 5 6 3.6380 -0.8430 -0.0016 6 6 2.2760 -1.0900 -0.0005 7 6 1.7051 -2.4847 0.0055 8 6 1.3943 -2.9063 -1.4075 9 8 1.6142 -2.1487 -2.3287 10 7 0.8719 -4.1252 -1.6476 11 6 0.5703 -4.5353 -3.0213 12 6 0.0005 -5.9304 -3.0155 13 1 -0.1249 -6.4587 -2.0819 14 6 -0.3618 -6.5322 -4.2019 15 7 -0.2096 -5.8887 -5.3388 16 14 -1.0688 -8.2611 -4.1947 17 1 -2.5466 -8.1912 -4.0665 18 1 -0.7138 -8.9465 -5.4633 19 1 -0.5080 -9.0204 -3.0483 20 1 -0.3633 -0.0005 1.0277 21 1 -0.3633 0.8903 -0.5134 22 1 -0.3634 -0.8897 -0.5142 23 1 4.9863 0.8269 -0.0007 24 1 4.3720 -1.6352 -0.0017 25 1 2.4312 -3.1727 0.4386 26 1 0.7909 -2.5005 0.5988 27 1 0.6957 -4.7311 -0.9108 28 1 -0.1560 -3.8476 -3.4547 29 1 1.4847 -4.5192 -3.6144 30 1 -0.4642 -6.3122 -6.1736 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331194596.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:58 Heat of formation + Delta-G solvation = -20.196724 kcal Electronic energy + Delta-G solvation = -14318.735799 eV Core-core repulsion = 11819.151338 eV Total energy + Delta-G solvation = -2499.584461 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.33812 -37.49499 -34.11996 -32.35552 -32.04795 -30.01297 -27.16429 -25.37702 -22.92704 -22.14087 -19.78272 -18.25590 -17.06010 -17.01543 -15.65333 -15.47140 -14.90733 -14.48379 -14.06481 -13.68769 -13.31340 -12.72789 -12.64484 -12.40321 -12.01558 -11.91411 -11.84452 -11.48437 -11.25290 -10.97804 -10.86420 -10.61186 -10.30416 -9.39014 -9.07300 -8.72792 -8.39891 -8.18934 -7.85575 -6.16279 -4.23277 1.14539 1.76218 2.09955 2.82507 3.24174 3.30378 3.32784 3.42136 4.21245 4.43948 4.94232 4.99625 5.19761 5.26436 5.42987 5.56096 5.59437 5.64692 5.75526 5.79392 6.07708 6.20025 6.52838 6.67455 7.32582 7.46527 7.53061 7.67894 7.97930 8.65276 8.79624 9.14301 9.43708 10.93953 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.057079 B = 0.004545 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.426634 B = 6159.262545 C = 6197.203659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.159 4.159 3 S 0.077 5.923 4 C -0.220 4.220 5 C -0.113 4.113 6 C -0.084 4.084 7 C -0.085 4.085 8 C 0.498 3.502 9 O -0.546 6.546 10 N -0.715 5.715 11 C 0.250 3.750 12 C -0.543 4.543 13 H 0.063 0.937 14 C 0.063 3.937 15 N -0.886 5.886 16 Si 0.904 3.096 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.273 1.273 20 H 0.072 0.928 21 H 0.068 0.932 22 H 0.079 0.921 23 H 0.161 0.839 24 H 0.137 0.863 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.390 0.610 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.095 9.879 13.717 17.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.276 4.276 3 S 0.340 5.660 4 C -0.355 4.355 5 C -0.144 4.144 6 C -0.096 4.096 7 C -0.128 4.128 8 C 0.282 3.718 9 O -0.425 6.425 10 N -0.364 5.364 11 C 0.129 3.871 12 C -0.581 4.581 13 H 0.081 0.919 14 C -0.140 4.140 15 N -0.523 5.523 16 Si 0.731 3.269 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.197 1.197 20 H 0.091 0.909 21 H 0.087 0.913 22 H 0.097 0.903 23 H 0.178 0.822 24 H 0.155 0.845 25 H 0.115 0.885 26 H 0.114 0.886 27 H 0.222 0.778 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.967 11.975 12.813 17.980 hybrid contribution -0.047 -2.754 0.120 2.757 sum 3.920 9.220 12.932 16.359 Atomic orbital electron populations 1.20338 0.87998 1.03662 1.02139 1.24176 0.99755 0.94933 1.08752 1.83994 0.97437 1.10111 1.74420 1.25360 1.01399 0.96612 1.12169 1.19998 0.95596 0.96484 1.02276 1.18267 0.92786 0.94548 1.04023 1.20426 1.02424 0.93450 0.96478 1.20348 0.78590 0.82551 0.90268 1.90676 1.53240 1.52656 1.45899 1.46469 1.62626 1.15152 1.12149 1.19084 0.96399 0.94800 0.76784 1.21236 1.43717 0.99665 0.93521 0.91896 1.24956 0.95446 0.98418 0.95208 1.69983 1.46725 1.37705 0.97916 0.86416 0.79292 0.83581 0.77629 1.20463 1.21013 1.19739 0.90926 0.91342 0.90268 0.82159 0.84480 0.88527 0.88577 0.77750 0.95637 0.95647 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 9.78 36.01 0.35 -0.69 16 2 C -0.16 -2.29 6.50 -36.00 -0.23 -2.52 16 3 S 0.08 0.98 23.33 -107.50 -2.51 -1.53 16 4 C -0.22 -2.77 11.23 29.04 0.33 -2.45 16 5 C -0.11 -1.57 9.96 -41.21 -0.41 -1.98 16 6 C -0.08 -1.26 4.29 -106.25 -0.46 -1.72 16 7 C -0.09 -1.22 5.34 -29.04 -0.16 -1.37 16 8 C 0.50 9.91 7.55 -10.99 -0.08 9.83 16 9 O -0.55 -13.36 16.03 5.56 0.09 -13.27 16 10 N -0.72 -14.94 5.55 -61.47 -0.34 -15.28 16 11 C 0.25 6.66 5.43 -5.19 -0.03 6.63 16 12 C -0.54 -14.72 9.28 -34.44 -0.32 -15.04 16 13 H 0.06 1.59 7.60 -52.48 -0.40 1.19 16 14 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 15 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 16 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 20 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 21 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 22 H 0.08 1.12 7.19 -51.93 -0.37 0.74 16 23 H 0.16 1.57 8.06 -52.49 -0.42 1.15 16 24 H 0.14 1.68 8.06 -52.49 -0.42 1.25 16 25 H 0.10 1.15 8.11 -51.93 -0.42 0.73 16 26 H 0.10 1.15 7.52 -51.93 -0.39 0.76 16 27 H 0.39 6.88 8.32 -40.82 -0.34 6.54 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 279.61 15.07 4.21 4.21 Total: -1.00 -32.69 279.61 -7.53 -40.22 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -3.59 Total: 3.00 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -1.11 Total: -7.65 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.40 Total: -40.77 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.09 Total: -13.27 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.51 Total: -1.53 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -32.69 -7.53 -40.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331194596.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.023 kcal (2) G-P(sol) polarization free energy of solvation -32.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds