Wall clock time and date at job start Mon Mar 30 2020 04:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 S 1.75878 * 125.20480 * 2 1 4 4 C 1.75884 * 90.97033 * 180.02562 * 3 2 1 5 5 C 1.33386 * 109.59706 * 0.02562 * 4 3 2 6 6 C 1.33394 * 125.20048 * 180.02562 * 2 1 3 7 7 C 1.50699 * 122.53859 * 359.70222 * 6 2 1 8 8 C 1.50697 * 109.46946 * 85.00349 * 7 6 2 9 9 O 1.21275 * 120.00211 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99736 * 179.97438 * 8 7 6 11 11 C 1.46502 * 119.99816 * 180.02562 * 10 8 7 12 12 C 1.50704 * 109.47375 * 179.97438 * 11 10 8 13 13 H 1.08004 * 119.99939 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00529 * 179.97438 * 12 11 10 15 15 N 1.31518 * 119.99539 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00438 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47266 * 89.99913 * 16 14 12 18 18 H 1.48500 * 109.47552 * 210.00425 * 16 14 12 19 19 H 1.48500 * 109.46970 * 330.00055 * 16 14 12 20 20 H 1.09006 * 109.46630 * 269.97038 * 1 2 3 21 21 H 1.09002 * 109.46774 * 29.96908 * 1 2 3 22 22 H 1.08994 * 109.47373 * 149.97223 * 1 2 3 23 23 H 1.08002 * 125.20650 * 180.02562 * 4 3 2 24 24 H 1.07999 * 122.54538 * 180.02562 * 5 4 3 25 25 H 1.09002 * 109.47229 * 205.00733 * 7 6 2 26 26 H 1.08999 * 109.47288 * 325.00551 * 7 6 2 27 27 H 0.97000 * 120.00344 * 0.02562 * 10 8 7 28 28 H 1.09003 * 109.47561 * 299.99955 * 11 10 8 29 29 H 1.09004 * 109.47363 * 60.00066 * 11 10 8 30 30 H 0.97006 * 119.99640 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5210 1.4371 0.0000 4 6 3.9751 0.4476 -0.0008 5 6 3.6380 -0.8430 -0.0016 6 6 2.2760 -1.0900 -0.0005 7 6 1.7051 -2.4847 0.0055 8 6 1.3943 -2.9063 -1.4075 9 8 1.6142 -2.1487 -2.3287 10 7 0.8719 -4.1252 -1.6476 11 6 0.5703 -4.5353 -3.0213 12 6 0.0005 -5.9304 -3.0155 13 1 -0.1249 -6.4587 -2.0819 14 6 -0.3618 -6.5322 -4.2019 15 7 -0.2096 -5.8887 -5.3388 16 14 -1.0688 -8.2611 -4.1947 17 1 -2.5466 -8.1912 -4.0665 18 1 -0.7138 -8.9465 -5.4633 19 1 -0.5080 -9.0204 -3.0483 20 1 -0.3633 -0.0005 1.0277 21 1 -0.3633 0.8903 -0.5134 22 1 -0.3634 -0.8897 -0.5142 23 1 4.9863 0.8269 -0.0007 24 1 4.3720 -1.6352 -0.0017 25 1 2.4312 -3.1727 0.4386 26 1 0.7909 -2.5005 0.5988 27 1 0.6957 -4.7311 -0.9108 28 1 -0.1560 -3.8476 -3.4547 29 1 1.4847 -4.5192 -3.6144 30 1 -0.4642 -6.3122 -6.1736 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331194596.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:04:58 Heat of formation + Delta-G solvation = -42.432873 kcal Electronic energy + Delta-G solvation = -14319.700031 eV Core-core repulsion = 11819.151338 eV Total energy + Delta-G solvation = -2500.548693 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.80649 -38.78832 -36.07423 -34.33723 -33.10945 -31.32557 -29.04383 -26.57483 -24.67384 -23.43849 -21.47152 -19.49110 -18.76453 -18.05794 -17.45928 -17.06610 -16.47384 -16.07552 -15.58429 -14.92756 -14.54392 -14.31469 -13.95956 -13.91187 -13.65239 -13.35469 -12.94424 -12.87609 -12.74014 -12.57308 -12.37220 -12.21615 -11.64248 -11.47192 -10.79499 -10.77652 -9.79514 -9.41267 -9.24497 -8.28497 -6.45244 0.11268 0.75772 1.08883 1.43876 1.46298 1.57497 1.72661 1.82863 2.35834 2.77824 3.06541 3.85664 3.99576 4.15393 4.29737 4.50179 4.54736 4.68385 4.70710 4.75587 5.08152 5.13099 5.19398 5.25155 5.48898 5.51720 5.63353 5.72514 5.86298 6.66554 6.96051 7.24712 7.55277 8.83787 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.057079 B = 0.004545 C = 0.004517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.426634 B = 6159.262545 C = 6197.203659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.179 4.179 3 S 0.092 5.908 4 C -0.219 4.219 5 C -0.134 4.134 6 C -0.107 4.107 7 C -0.070 4.070 8 C 0.498 3.502 9 O -0.597 6.597 10 N -0.709 5.709 11 C 0.267 3.733 12 C -0.555 4.555 13 H 0.085 0.915 14 C 0.003 3.997 15 N -0.933 5.933 16 Si 0.985 3.015 17 H -0.270 1.270 18 H -0.285 1.285 19 H -0.254 1.254 20 H 0.100 0.900 21 H 0.071 0.929 22 H 0.058 0.942 23 H 0.187 0.813 24 H 0.150 0.850 25 H 0.128 0.872 26 H 0.125 0.875 27 H 0.409 0.591 28 H -0.015 1.015 29 H -0.016 1.016 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.046 9.024 15.873 18.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.296 4.296 3 S 0.356 5.644 4 C -0.354 4.354 5 C -0.164 4.164 6 C -0.120 4.120 7 C -0.112 4.112 8 C 0.285 3.715 9 O -0.478 6.478 10 N -0.359 5.359 11 C 0.144 3.856 12 C -0.593 4.593 13 H 0.103 0.897 14 C -0.196 4.196 15 N -0.572 5.572 16 Si 0.808 3.192 17 H -0.196 1.196 18 H -0.211 1.211 19 H -0.178 1.178 20 H 0.119 0.881 21 H 0.090 0.910 22 H 0.077 0.923 23 H 0.204 0.796 24 H 0.167 0.833 25 H 0.146 0.854 26 H 0.143 0.857 27 H 0.245 0.755 28 H 0.003 0.997 29 H 0.002 0.998 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.921 11.118 15.033 19.105 hybrid contribution 0.011 -2.362 -0.560 2.428 sum 3.932 8.756 14.473 17.367 Atomic orbital electron populations 1.20378 0.87198 1.02838 1.03681 1.24545 1.00786 0.95730 1.08571 1.83909 0.97254 1.09359 1.73859 1.25755 1.02583 0.96304 1.10790 1.20234 0.95582 0.97491 1.03128 1.18492 0.93526 0.94819 1.05115 1.20396 1.04624 0.93935 0.92226 1.21370 0.76628 0.81193 0.92319 1.90650 1.54981 1.53899 1.48273 1.46204 1.62998 1.16309 1.10435 1.18505 0.93347 0.94501 0.79247 1.21641 1.43345 0.99692 0.94603 0.89666 1.26079 0.95578 1.03378 0.94606 1.70151 1.48043 1.40089 0.98873 0.85151 0.78575 0.77427 0.78032 1.19579 1.21081 1.17795 0.88127 0.90996 0.92263 0.79578 0.83263 0.85425 0.85721 0.75487 0.99692 0.99792 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.98 9.78 71.24 0.70 -1.28 16 2 C -0.18 -4.94 6.50 24.59 0.16 -4.78 16 3 S 0.09 2.22 23.33 -56.49 -1.32 0.90 16 4 C -0.22 -5.12 11.23 66.72 0.75 -4.37 16 5 C -0.13 -3.52 9.96 21.22 0.21 -3.31 16 6 C -0.11 -3.06 4.29 -20.92 -0.09 -3.15 16 7 C -0.07 -1.87 5.34 29.10 0.16 -1.71 16 8 C 0.50 19.80 7.55 87.66 0.66 20.46 16 9 O -0.60 -30.09 16.03 -3.01 -0.05 -30.14 16 10 N -0.71 -29.67 5.55 -466.78 -2.59 -32.26 16 11 C 0.27 14.75 5.43 85.63 0.46 15.21 16 12 C -0.56 -30.14 9.28 25.60 0.24 -29.91 16 13 H 0.09 4.14 7.60 -2.91 -0.02 4.12 16 14 C 0.00 0.17 5.46 84.65 0.46 0.63 16 15 N -0.93 -56.66 13.29 21.45 0.28 -56.38 16 16 Si 0.99 42.18 29.54 68.60 2.03 44.20 16 17 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 18 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 19 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 20 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 21 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.06 1.65 7.19 -2.39 -0.02 1.63 16 23 H 0.19 3.19 8.06 -2.91 -0.02 3.17 16 24 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 25 H 0.13 2.63 8.11 -2.39 -0.02 2.61 16 26 H 0.12 2.62 7.52 -2.39 -0.02 2.60 16 27 H 0.41 13.82 8.32 -92.71 -0.77 13.05 16 28 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 29 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 30 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 Total: -1.00 -73.18 279.61 2.44 -70.74 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 0.38 Total: 15.13 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: 3.71 Total: -12.20 kcal Atomic # 7 Polarization: -86.33 SS G_CDS: -2.30 Total: -88.64 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -0.05 Total: -30.14 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -1.32 Total: 0.90 kcal Total: -73.18 2.44 -70.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331194596.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.306 kcal (2) G-P(sol) polarization free energy of solvation -73.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds