Wall clock time and date at job start Mon Mar 30 2020 04:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37937 * 119.99310 * 2 1 4 4 C 1.38453 * 120.20855 * 179.97438 * 3 2 1 5 5 F 1.35104 * 119.90299 * 180.02562 * 4 3 2 6 6 C 1.39312 * 120.19812 * 0.02562 * 4 3 2 7 7 N 1.39870 * 120.00670 * 180.02562 * 6 4 3 8 8 C 1.38423 * 119.98607 * 0.02562 * 6 4 3 9 9 C 1.39699 * 119.99492 * 180.02562 * 2 1 3 10 10 C 1.47548 * 120.10164 * 0.02562 * 9 2 1 11 11 O 1.21525 * 119.99815 * 6.27620 * 10 9 2 12 12 O 1.34743 * 120.00172 * 186.26675 * 10 9 2 13 13 C 1.34861 * 117.00082 * 180.02562 * 12 10 9 14 14 H 1.08002 * 119.99848 * 359.97438 * 13 12 10 15 15 C 1.38803 * 120.00409 * 179.97438 * 13 12 10 16 16 N 1.31421 * 119.99619 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00242 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47098 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46728 * 120.00066 * 17 15 13 20 20 H 1.48501 * 109.47211 * 240.00168 * 17 15 13 21 21 H 1.08992 * 109.47328 * 96.60256 * 1 2 3 22 22 H 1.08991 * 109.46973 * 216.60431 * 1 2 3 23 23 H 1.09007 * 109.46865 * 336.59925 * 1 2 3 24 24 H 1.08000 * 119.89829 * 0.02562 * 3 2 1 25 25 H 0.97000 * 120.00029 * 179.97438 * 7 6 4 26 26 H 0.96996 * 119.99993 * 359.97438 * 7 6 4 27 27 H 1.08002 * 120.10407 * 179.72840 * 8 6 4 28 28 H 0.96995 * 119.99973 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1947 0.0000 4 6 3.5811 1.1999 0.0005 5 9 4.2502 2.3736 0.0011 6 6 4.2863 -0.0016 0.0005 7 7 5.6850 0.0084 0.0016 8 6 3.6026 -1.2051 -0.0005 9 6 2.2054 -1.2099 -0.0005 10 6 1.4698 -2.4889 -0.0017 11 8 0.2601 -2.4940 -0.1172 12 8 2.1394 -3.6513 0.1252 13 6 1.4072 -4.7838 0.1159 14 1 0.3336 -4.7319 0.0105 15 6 2.0333 -6.0162 0.2418 16 7 3.3397 -6.0794 0.3706 17 14 1.0190 -7.5848 0.2297 18 1 -0.4179 -7.2439 0.0739 19 1 1.4492 -8.4436 -0.9030 20 1 1.2195 -8.3139 1.5077 21 1 -0.3633 -0.1182 -1.0208 22 1 -0.3633 -0.8249 0.6127 23 1 -0.3633 0.9432 0.4082 24 1 1.6548 2.1289 0.0004 25 1 6.1760 -0.8282 0.0020 26 1 6.1640 0.8518 0.0020 27 1 4.1474 -2.1377 -0.0050 28 1 3.7772 -6.9405 0.4589 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379962145.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:39 Heat of formation + Delta-G solvation = -102.021405 kcal Electronic energy + Delta-G solvation = -16465.458653 eV Core-core repulsion = 13396.112831 eV Total energy + Delta-G solvation = -3069.345821 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.66307 -39.64445 -38.16770 -35.54986 -34.41348 -32.27101 -30.70028 -30.18793 -26.11243 -25.23670 -23.38359 -21.67127 -20.04694 -17.89510 -17.53555 -16.85224 -16.82092 -15.59884 -15.47797 -14.97039 -14.59944 -14.44656 -14.18416 -13.50093 -13.09116 -12.94390 -12.74222 -12.12831 -12.05246 -11.70797 -11.47704 -11.22938 -10.92413 -10.47794 -10.42395 -10.12874 -9.87501 -8.83159 -8.64747 -8.53176 -7.28668 -6.50385 -4.12191 1.11902 1.66769 3.08022 3.16001 3.23458 3.41966 3.85398 3.93146 4.25081 4.43965 4.52793 4.94481 5.10732 5.33929 5.50300 5.87431 5.88010 6.00447 6.26676 6.33847 6.45098 6.52634 6.74694 6.95844 7.11720 7.35808 7.53814 7.82343 7.88656 8.67396 8.98899 9.79530 10.67438 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.035459 B = 0.006543 C = 0.005544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.451239 B = 4278.377684 C = 5049.124261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.063 4.063 3 C -0.122 4.122 4 C 0.029 3.971 5 F -0.147 7.147 6 C 0.170 3.830 7 N -0.877 5.877 8 C -0.121 4.121 9 C -0.053 4.053 10 C 0.432 3.568 11 O -0.543 6.543 12 O -0.205 6.205 13 C -0.372 4.372 14 H 0.099 0.901 15 C 0.041 3.959 16 N -0.859 5.859 17 Si 0.944 3.056 18 H -0.264 1.264 19 H -0.276 1.276 20 H -0.276 1.276 21 H 0.070 0.930 22 H 0.098 0.902 23 H 0.049 0.951 24 H 0.136 0.864 25 H 0.404 0.596 26 H 0.398 0.602 27 H 0.149 0.851 28 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.489 10.549 -0.375 10.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.066 4.066 3 C -0.141 4.141 4 C 0.005 3.995 5 F -0.126 7.126 6 C 0.066 3.934 7 N -0.418 5.418 8 C -0.144 4.144 9 C -0.055 4.055 10 C 0.280 3.720 11 O -0.442 6.442 12 O -0.112 6.112 13 C -0.448 4.448 14 H 0.117 0.883 15 C -0.164 4.164 16 N -0.495 5.495 17 Si 0.769 3.231 18 H -0.188 1.188 19 H -0.201 1.201 20 H -0.201 1.201 21 H 0.088 0.912 22 H 0.116 0.884 23 H 0.068 0.932 24 H 0.153 0.847 25 H 0.233 0.767 26 H 0.226 0.774 27 H 0.167 0.833 28 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.340 10.390 -0.376 10.657 hybrid contribution 0.266 -0.522 -0.025 0.586 sum 2.606 9.868 -0.401 10.214 Atomic orbital electron populations 1.20967 0.89735 1.02437 1.03506 1.19589 0.96968 0.90243 0.99797 1.20626 0.91253 0.98728 1.03517 1.17259 0.90116 0.79490 1.12668 1.91402 1.80693 1.45692 1.94845 1.17587 0.84882 0.92299 0.98629 1.42265 1.02463 1.11114 1.85942 1.20942 0.93523 0.96591 1.03309 1.19064 0.92404 0.91649 1.02367 1.20627 0.86089 0.84993 0.80242 1.90583 1.15046 1.87469 1.51141 1.83897 1.39908 1.13121 1.74246 1.21377 0.92455 0.80565 1.50429 0.88306 1.25384 0.96185 0.98676 0.96142 1.69980 1.08223 1.26270 1.45073 0.85585 0.79606 0.79757 0.78179 1.18802 1.20118 1.20107 0.91176 0.88408 0.93193 0.84658 0.76701 0.77415 0.83338 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.84 8.72 36.01 0.31 -1.52 15 2 C -0.06 -1.12 5.92 -104.19 -0.62 -1.74 15 3 C -0.12 -1.86 9.63 -39.61 -0.38 -2.24 15 4 C 0.03 0.44 7.32 -39.10 -0.29 0.16 15 5 F -0.15 -2.13 16.63 2.25 0.04 -2.09 15 6 C 0.17 2.69 6.75 -83.72 -0.57 2.12 15 7 N -0.88 -10.83 9.09 32.43 0.29 -10.53 15 8 C -0.12 -2.23 9.46 -38.96 -0.37 -2.60 15 9 C -0.05 -1.08 5.87 -105.00 -0.62 -1.70 15 10 C 0.43 10.80 7.76 34.53 0.27 11.06 15 11 O -0.54 -14.14 12.58 -19.29 -0.24 -14.39 15 12 O -0.20 -5.76 9.01 -21.69 -0.20 -5.96 15 13 C -0.37 -10.75 9.65 30.94 0.30 -10.45 15 14 H 0.10 2.86 6.86 -52.49 -0.36 2.50 15 15 C 0.04 1.12 5.49 -17.52 -0.10 1.02 15 16 N -0.86 -24.38 13.67 55.49 0.76 -23.62 15 17 Si 0.94 20.76 29.55 -169.99 -5.02 15.74 15 18 H -0.26 -5.72 7.11 56.52 0.40 -5.32 15 19 H -0.28 -5.87 7.11 56.52 0.40 -5.47 15 20 H -0.28 -5.87 7.11 56.52 0.40 -5.47 15 21 H 0.07 1.16 8.14 -51.93 -0.42 0.74 15 22 H 0.10 1.89 5.85 -51.93 -0.30 1.58 15 23 H 0.05 0.66 8.04 -51.92 -0.42 0.25 15 24 H 0.14 1.68 8.05 -52.49 -0.42 1.26 15 25 H 0.40 4.43 8.84 -40.82 -0.36 4.07 15 26 H 0.40 4.17 8.31 -40.82 -0.34 3.83 15 27 H 0.15 2.87 7.62 -52.49 -0.40 2.47 15 28 H 0.27 7.01 8.31 -40.82 -0.34 6.67 15 LS Contribution 258.43 15.07 3.89 3.89 Total: -1.00 -31.05 258.43 -4.69 -35.74 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -2.16 Total: 7.10 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -2.05 Total: -5.89 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 1.05 Total: -34.15 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.44 Total: -20.35 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.05 -4.69 -35.74 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379962145.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.280 kcal (2) G-P(sol) polarization free energy of solvation -31.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds