Wall clock time and date at job start Mon Mar 30 2020 04:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37937 * 119.99310 * 2 1 4 4 C 1.38453 * 120.20855 * 179.97438 * 3 2 1 5 5 F 1.35104 * 119.90299 * 180.02562 * 4 3 2 6 6 C 1.39312 * 120.19812 * 0.02562 * 4 3 2 7 7 N 1.39870 * 120.00670 * 180.02562 * 6 4 3 8 8 C 1.38423 * 119.98607 * 0.02562 * 6 4 3 9 9 C 1.39699 * 119.99492 * 180.02562 * 2 1 3 10 10 C 1.47548 * 120.10164 * 0.02562 * 9 2 1 11 11 O 1.21525 * 119.99815 * 6.27620 * 10 9 2 12 12 O 1.34743 * 120.00172 * 186.26675 * 10 9 2 13 13 C 1.34861 * 117.00082 * 180.02562 * 12 10 9 14 14 H 1.08002 * 119.99848 * 359.97438 * 13 12 10 15 15 C 1.38803 * 120.00409 * 179.97438 * 13 12 10 16 16 N 1.31421 * 119.99619 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00242 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47098 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46728 * 120.00066 * 17 15 13 20 20 H 1.48501 * 109.47211 * 240.00168 * 17 15 13 21 21 H 1.08992 * 109.47328 * 96.60256 * 1 2 3 22 22 H 1.08991 * 109.46973 * 216.60431 * 1 2 3 23 23 H 1.09007 * 109.46865 * 336.59925 * 1 2 3 24 24 H 1.08000 * 119.89829 * 0.02562 * 3 2 1 25 25 H 0.97000 * 120.00029 * 179.97438 * 7 6 4 26 26 H 0.96996 * 119.99993 * 359.97438 * 7 6 4 27 27 H 1.08002 * 120.10407 * 179.72840 * 8 6 4 28 28 H 0.96995 * 119.99973 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1947 0.0000 4 6 3.5811 1.1999 0.0005 5 9 4.2502 2.3736 0.0011 6 6 4.2863 -0.0016 0.0005 7 7 5.6850 0.0084 0.0016 8 6 3.6026 -1.2051 -0.0005 9 6 2.2054 -1.2099 -0.0005 10 6 1.4698 -2.4889 -0.0017 11 8 0.2601 -2.4940 -0.1172 12 8 2.1394 -3.6513 0.1252 13 6 1.4072 -4.7838 0.1159 14 1 0.3336 -4.7319 0.0105 15 6 2.0333 -6.0162 0.2418 16 7 3.3397 -6.0794 0.3706 17 14 1.0190 -7.5848 0.2297 18 1 -0.4179 -7.2439 0.0739 19 1 1.4492 -8.4436 -0.9030 20 1 1.2195 -8.3139 1.5077 21 1 -0.3633 -0.1182 -1.0208 22 1 -0.3633 -0.8249 0.6127 23 1 -0.3633 0.9432 0.4082 24 1 1.6548 2.1289 0.0004 25 1 6.1760 -0.8282 0.0020 26 1 6.1640 0.8518 0.0020 27 1 4.1474 -2.1377 -0.0050 28 1 3.7772 -6.9405 0.4589 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379962145.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:39 Heat of formation + Delta-G solvation = -122.537921 kcal Electronic energy + Delta-G solvation = -16466.348315 eV Core-core repulsion = 13396.112831 eV Total energy + Delta-G solvation = -3070.235484 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -49.89098 -41.38036 -39.80781 -37.40189 -35.83928 -34.34230 -32.14916 -31.49990 -27.85518 -26.89485 -24.91480 -23.18204 -21.64775 -19.89862 -19.17391 -18.19864 -18.12375 -17.34463 -16.80868 -16.46145 -16.35603 -16.23439 -15.74055 -14.80036 -14.61964 -14.40297 -14.33093 -13.70283 -13.48957 -13.36965 -13.14655 -12.85876 -12.35087 -12.29469 -12.14075 -11.97358 -11.42443 -10.75968 -10.67906 -9.93398 -8.56183 -8.52165 -6.31848 -0.35046 0.33896 1.35319 1.36044 1.53739 1.74743 2.10238 2.63450 2.66612 2.82377 3.03191 3.14483 3.66604 3.96970 4.11048 4.51514 4.58028 4.72500 4.89491 4.91623 4.95241 5.05364 5.17168 5.30233 5.60908 5.73204 5.84404 6.35970 6.64442 6.85337 6.89303 7.74995 8.64708 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.035459 B = 0.006543 C = 0.005544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.451239 B = 4278.377684 C = 5049.124261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.068 4.068 3 C -0.104 4.104 4 C 0.041 3.959 5 F -0.134 7.134 6 C 0.179 3.821 7 N -0.861 5.861 8 C -0.130 4.130 9 C -0.084 4.084 10 C 0.432 3.568 11 O -0.560 6.560 12 O -0.234 6.234 13 C -0.416 4.416 14 H 0.085 0.915 15 C -0.003 4.003 16 N -0.898 5.898 17 Si 1.018 2.982 18 H -0.263 1.263 19 H -0.260 1.260 20 H -0.260 1.260 21 H 0.067 0.933 22 H 0.064 0.936 23 H 0.090 0.910 24 H 0.175 0.825 25 H 0.411 0.589 26 H 0.411 0.589 27 H 0.130 0.870 28 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.793 12.247 -0.385 12.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.070 4.070 3 C -0.123 4.123 4 C 0.017 3.983 5 F -0.113 7.113 6 C 0.072 3.928 7 N -0.404 5.404 8 C -0.154 4.154 9 C -0.086 4.086 10 C 0.281 3.719 11 O -0.459 6.459 12 O -0.142 6.142 13 C -0.492 4.492 14 H 0.103 0.897 15 C -0.204 4.204 16 N -0.535 5.535 17 Si 0.837 3.163 18 H -0.187 1.187 19 H -0.185 1.185 20 H -0.185 1.185 21 H 0.085 0.915 22 H 0.083 0.917 23 H 0.109 0.891 24 H 0.193 0.807 25 H 0.242 0.758 26 H 0.241 0.759 27 H 0.148 0.852 28 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.687 12.125 -0.387 12.425 hybrid contribution 0.254 -0.782 -0.028 0.823 sum 2.941 11.342 -0.416 11.725 Atomic orbital electron populations 1.20897 0.89178 1.03263 1.02919 1.19734 0.97495 0.89992 0.99818 1.20913 0.91201 0.99042 1.01120 1.17289 0.90343 0.79565 1.11096 1.91449 1.80464 1.44824 1.94553 1.17508 0.86206 0.91505 0.97558 1.42266 1.01193 1.12389 1.84512 1.20714 0.92860 0.97139 1.04677 1.18986 0.93236 0.90322 1.06078 1.21590 0.86364 0.85806 0.78108 1.90556 1.16014 1.87991 1.51346 1.83923 1.40562 1.13904 1.75839 1.21549 0.92233 0.81842 1.53529 0.89719 1.26548 0.97536 1.01642 0.94647 1.70059 1.09861 1.27764 1.45822 0.84557 0.77629 0.74912 0.79208 1.18742 1.18460 1.18455 0.91457 0.91726 0.89097 0.80735 0.75835 0.75855 0.85162 0.91113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.42 8.72 71.24 0.62 -2.80 15 2 C -0.07 -2.31 5.92 -19.58 -0.12 -2.42 15 3 C -0.10 -2.78 9.63 22.25 0.21 -2.57 15 4 C 0.04 1.13 7.32 22.58 0.17 1.30 15 5 F -0.13 -3.27 16.63 44.97 0.75 -2.52 15 6 C 0.18 5.29 6.75 38.16 0.26 5.55 15 7 N -0.86 -19.30 9.09 -51.30 -0.47 -19.77 15 8 C -0.13 -4.88 9.46 22.67 0.21 -4.66 15 9 C -0.08 -3.52 5.87 -20.11 -0.12 -3.64 15 10 C 0.43 22.71 7.76 70.28 0.55 23.26 15 11 O -0.56 -30.62 12.58 19.76 0.25 -30.37 15 12 O -0.23 -13.97 9.01 11.16 0.10 -13.87 15 13 C -0.42 -25.27 9.65 67.96 0.66 -24.62 15 14 H 0.09 5.20 6.86 -2.91 -0.02 5.18 15 15 C 0.00 -0.17 5.49 84.89 0.47 0.29 15 16 N -0.90 -52.42 13.67 21.63 0.30 -52.12 15 17 Si 1.02 43.11 29.55 68.60 2.03 45.14 15 18 H -0.26 -10.98 7.11 99.48 0.71 -10.28 15 19 H -0.26 -10.29 7.11 99.48 0.71 -9.58 15 20 H -0.26 -10.29 7.11 99.48 0.71 -9.58 15 21 H 0.07 2.18 8.14 -2.39 -0.02 2.16 15 22 H 0.06 2.53 5.85 -2.39 -0.01 2.52 15 23 H 0.09 2.13 8.04 -2.38 -0.02 2.11 15 24 H 0.18 3.34 8.05 -2.91 -0.02 3.32 15 25 H 0.41 8.38 8.84 -92.71 -0.82 7.56 15 26 H 0.41 7.29 8.31 -92.71 -0.77 6.52 15 27 H 0.13 5.30 7.62 -2.91 -0.02 5.28 15 28 H 0.28 14.71 8.31 -92.71 -0.77 13.94 15 Total: -1.00 -70.19 258.43 5.50 -64.69 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -0.36 Total: 19.13 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: 2.91 Total: -10.31 kcal Atomic # 7 Polarization: -71.72 SS G_CDS: -0.17 Total: -71.89 kcal Atomic # 8 Polarization: -44.59 SS G_CDS: 0.35 Total: -44.24 kcal Atomic # 9 Polarization: -3.27 SS G_CDS: 0.75 Total: -2.52 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -70.19 5.50 -64.69 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379962145.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.846 kcal (2) G-P(sol) polarization free energy of solvation -70.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds