Wall clock time and date at job start Mon Mar 30 2020 03:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46902 * 111.00551 * 2 1 4 4 C 1.50698 * 109.46771 * 69.34947 * 3 2 1 5 5 H 1.07997 * 120.00288 * 359.97438 * 4 3 2 6 6 C 1.37883 * 119.99724 * 180.02562 * 4 3 2 7 7 N 1.31508 * 119.99910 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99937 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46888 * 90.00203 * 8 6 4 10 10 H 1.48492 * 109.47160 * 209.99906 * 8 6 4 11 11 H 1.48502 * 109.47321 * 330.00043 * 8 6 4 12 12 C 1.46899 * 110.99891 * 236.04064 * 2 1 3 13 13 H 1.09006 * 109.03225 * 71.15377 * 12 2 1 14 14 C 1.52525 * 109.05265 * 312.18163 * 12 2 1 15 15 C 1.53805 * 111.69322 * 293.61111 * 14 12 2 16 16 C 1.51630 * 107.04041 * 302.43790 * 15 14 12 17 17 H 1.09003 * 111.25116 * 304.32508 * 16 15 14 18 18 C 1.53075 * 116.61733 * 176.28777 * 16 15 14 19 19 N 1.49066 * 103.41653 * 204.04777 * 18 16 15 20 20 C 1.48647 * 108.30129 * 24.34676 * 19 18 16 21 21 C 1.52338 * 105.83611 * 3.20860 * 20 19 18 22 22 H 1.09000 * 109.87257 * 87.66177 * 21 20 19 23 23 C 1.51443 * 117.40687 * 214.57604 * 21 20 19 24 24 H 1.08999 * 109.47671 * 191.94924 * 1 2 3 25 25 H 1.08997 * 109.47032 * 311.95445 * 1 2 3 26 26 H 1.09004 * 109.46743 * 71.94977 * 1 2 3 27 27 H 1.08993 * 109.47106 * 189.34935 * 3 2 1 28 28 H 1.08991 * 109.46773 * 309.35149 * 3 2 1 29 29 H 0.97003 * 120.00113 * 179.97438 * 7 6 4 30 30 H 1.08992 * 109.03711 * 173.03509 * 14 12 2 31 31 H 1.09007 * 108.97052 * 54.13628 * 14 12 2 32 32 H 1.09004 * 109.94000 * 183.05701 * 15 14 12 33 33 H 1.08993 * 110.01794 * 61.86140 * 15 14 12 34 34 H 1.09006 * 110.63066 * 85.56805 * 18 16 15 35 35 H 1.08995 * 110.63190 * 322.53028 * 18 16 15 36 36 H 1.00897 * 110.99969 * 146.44326 * 19 18 16 37 37 H 1.08996 * 110.18342 * 244.10995 * 20 19 18 38 38 H 1.09008 * 110.17508 * 122.29675 * 20 19 18 39 39 H 1.08998 * 109.93472 * 298.23266 * 23 21 20 40 40 H 1.09005 * 109.93636 * 59.46126 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3714 0.0000 4 6 1.7078 2.0199 1.3295 5 1 1.1856 1.4686 2.0975 6 6 2.1103 3.3174 1.5651 7 7 2.7457 3.9889 0.6298 8 14 1.7530 4.1216 3.2129 9 1 2.8815 3.8655 4.1437 10 1 1.5894 5.5853 3.0242 11 1 0.5042 3.5530 3.7808 12 6 1.9954 -0.7661 -1.1375 13 1 1.8120 -0.2092 -2.0565 14 6 1.2700 -2.1056 -1.2140 15 6 1.5946 -2.9978 -0.0039 16 6 3.0998 -3.1788 0.0238 17 1 3.4667 -3.5813 -0.9204 18 6 3.6742 -3.9672 1.2034 19 7 5.0798 -3.4792 1.2940 20 6 5.1435 -2.1242 0.6862 21 6 3.7125 -1.7750 0.2978 22 1 3.2037 -1.3065 1.1403 23 6 3.5119 -0.9516 -0.9572 24 1 -0.3634 -1.0053 0.2128 25 1 -0.3633 0.6870 0.7642 26 1 -0.3633 0.3184 -0.9771 27 1 3.0724 1.3471 -0.1669 28 1 1.5175 1.9441 -0.7946 29 1 3.0286 4.9018 0.7954 30 1 1.5702 -2.6209 -2.1264 31 1 0.1954 -1.9255 -1.2449 32 1 1.1057 -3.9659 -0.1141 33 1 1.2612 -2.5158 0.9150 34 1 3.6516 -5.0374 0.9975 35 1 3.1289 -3.7397 2.1194 36 1 5.3952 -3.4610 2.2522 37 1 5.7804 -2.1383 -0.1982 38 1 5.5225 -1.4042 1.4117 39 1 3.9945 0.0194 -0.8457 40 1 3.9269 -1.4775 -1.8171 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400921699.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:57 Heat of formation + Delta-G solvation = -17.676388 kcal Electronic energy + Delta-G solvation = -18266.228671 eV Core-core repulsion = 15693.385480 eV Total energy + Delta-G solvation = -2572.843191 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 238.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.19786 -38.34140 -35.37231 -34.05278 -32.45666 -30.34961 -28.82172 -28.33791 -26.09113 -24.23968 -23.16938 -21.60400 -21.46307 -19.92434 -18.52607 -17.09329 -16.84034 -16.36368 -15.98095 -15.89141 -15.61848 -14.71682 -14.34555 -14.20620 -13.98385 -13.67481 -13.52226 -13.19758 -12.92994 -12.83774 -12.72622 -12.65498 -12.35716 -12.22455 -12.04714 -11.76931 -11.72033 -11.43439 -11.23156 -11.06410 -10.67488 -10.47733 -9.38280 -8.90969 -8.20259 -6.29704 1.38479 1.39496 1.50529 2.38570 3.11632 3.31903 3.34578 3.54924 3.85758 3.94941 4.17557 4.22496 4.39653 4.49783 4.52622 4.61532 4.65238 4.71539 4.76785 4.82007 4.86185 4.98132 4.98438 5.04558 5.13462 5.14393 5.21248 5.28801 5.34432 5.39370 5.42926 5.51396 5.66177 5.69485 5.88266 6.09793 6.41233 6.47421 6.70498 6.87528 7.39649 8.90386 Molecular weight = 238.17amu Principal moments of inertia in cm(-1) A = 0.025662 B = 0.007449 C = 0.006650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.837193 B = 3757.918039 C = 4209.771877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.531 5.531 3 C 0.207 3.793 4 C -0.517 4.517 5 H 0.060 0.940 6 C 0.001 3.999 7 N -0.935 5.935 8 Si 0.966 3.034 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.264 1.264 12 C 0.080 3.920 13 H 0.012 0.988 14 C -0.106 4.106 15 C -0.090 4.090 16 C -0.090 4.090 17 H 0.082 0.918 18 C 0.053 3.947 19 N -0.686 5.686 20 C 0.053 3.947 21 C -0.103 4.103 22 H 0.063 0.937 23 C -0.090 4.090 24 H 0.083 0.917 25 H 0.050 0.950 26 H 0.008 0.992 27 H 0.011 0.989 28 H -0.049 1.049 29 H 0.263 0.737 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.043 0.957 36 H 0.342 0.658 37 H 0.072 0.928 38 H 0.044 0.956 39 H 0.037 0.963 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.552 -15.336 -1.022 15.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.256 5.256 3 C 0.081 3.919 4 C -0.556 4.556 5 H 0.079 0.921 6 C -0.197 4.197 7 N -0.576 5.576 8 Si 0.790 3.210 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.189 1.189 12 C -0.029 4.029 13 H 0.030 0.970 14 C -0.144 4.144 15 C -0.127 4.127 16 C -0.109 4.109 17 H 0.100 0.900 18 C -0.075 4.075 19 N -0.315 5.315 20 C -0.076 4.076 21 C -0.123 4.123 22 H 0.081 0.919 23 C -0.128 4.128 24 H 0.102 0.898 25 H 0.069 0.931 26 H 0.027 0.973 27 H 0.029 0.971 28 H -0.031 1.031 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.110 0.890 35 H 0.062 0.938 36 H 0.157 0.843 37 H 0.091 0.909 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.074 -15.763 -1.201 15.809 hybrid contribution -0.629 2.287 0.511 2.426 sum -0.703 -13.476 -0.691 13.512 Atomic orbital electron populations 1.22284 0.88240 1.01717 0.98887 1.62085 1.07376 1.14508 1.41606 1.19402 0.93998 0.84018 0.94505 1.21459 1.36357 0.97664 1.00083 0.92142 1.25887 0.95110 0.97951 1.00755 1.70088 1.40713 1.11485 1.35334 0.85439 0.78890 0.77307 0.79326 1.19981 1.20842 1.18874 1.21767 0.95246 0.95028 0.90819 0.97040 1.21636 1.00014 0.93491 0.99251 1.21168 0.94324 0.99121 0.98133 1.21972 0.95913 0.94057 0.98932 0.89971 1.22634 0.87725 0.99937 0.97223 1.62676 1.22142 1.22934 1.23763 1.22287 0.96526 0.89349 0.99470 1.21842 0.95773 0.96469 0.98212 0.91900 1.21254 0.94760 0.99020 0.97750 0.89807 0.93095 0.97304 0.97087 1.03121 0.92815 0.90486 0.91274 0.89985 0.92528 0.88987 0.93832 0.84303 0.90940 0.93730 0.94453 0.90412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.41 8.43 127.69 1.08 2.48 16 2 N -0.53 -22.48 3.39 -900.89 -3.05 -25.54 16 3 C 0.21 11.12 4.58 85.56 0.39 11.51 16 4 C -0.52 -29.53 8.38 25.60 0.21 -29.32 16 5 H 0.06 3.39 7.43 -2.91 -0.02 3.37 16 6 C 0.00 0.04 5.46 84.66 0.46 0.50 16 7 N -0.94 -57.05 13.29 21.45 0.28 -56.77 16 8 Si 0.97 44.78 29.54 68.60 2.03 46.81 16 9 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 12 C 0.08 2.83 2.22 45.04 0.10 2.93 16 13 H 0.01 0.45 8.10 -2.38 -0.02 0.43 16 14 C -0.11 -2.81 4.79 30.71 0.15 -2.66 16 15 C -0.09 -2.18 5.45 30.42 0.17 -2.01 16 16 C -0.09 -2.24 2.48 -10.32 -0.03 -2.27 16 17 H 0.08 1.98 8.04 -2.39 -0.02 1.96 16 18 C 0.05 1.22 7.22 85.91 0.62 1.84 16 19 N -0.69 -17.07 7.48 -505.38 -3.78 -20.85 16 20 C 0.05 1.52 7.30 85.75 0.63 2.15 16 21 C -0.10 -3.27 2.24 -10.63 -0.02 -3.30 16 22 H 0.06 2.44 7.17 -2.39 -0.02 2.43 16 23 C -0.09 -3.07 5.09 30.37 0.15 -2.91 16 24 H 0.08 2.60 6.24 -2.39 -0.01 2.59 16 25 H 0.05 2.15 6.88 -2.39 -0.02 2.13 16 26 H 0.01 0.32 8.10 -2.38 -0.02 0.30 16 27 H 0.01 0.64 5.92 -2.39 -0.01 0.63 16 28 H -0.05 -2.91 8.09 -2.39 -0.02 -2.93 16 29 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.07 1.76 6.03 -2.38 -0.01 1.75 16 32 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.06 1.62 7.61 -2.39 -0.02 1.60 16 34 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 35 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.34 7.57 8.93 -89.70 -0.80 6.77 16 37 H 0.07 2.04 8.08 -2.39 -0.02 2.02 16 38 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.04 1.53 6.17 -2.39 -0.01 1.51 16 40 H 0.08 2.28 8.05 -2.38 -0.02 2.26 16 Total: -1.00 -63.34 298.50 -0.41 -63.74 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.21 Total: 13.66 kcal Atomic # 6 Polarization: -24.97 SS G_CDS: 3.91 Total: -21.06 kcal Atomic # 7 Polarization: -96.61 SS G_CDS: -6.55 Total: -103.15 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -63.34 -0.41 -63.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400921699.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.067 kcal (2) G-P(sol) polarization free energy of solvation -63.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds