Wall clock time and date at job start Mon Mar 30 2020 03:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86804 * 120.00312 * 2 1 4 4 H 1.48502 * 109.47027 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47213 * 300.00639 * 3 2 1 6 6 H 1.48499 * 109.46547 * 60.00505 * 3 2 1 7 7 C 1.40054 * 120.00129 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00416 * 179.97438 * 7 2 1 9 9 C 1.46380 * 119.99426 * 359.97438 * 7 2 1 10 10 O 1.21683 * 120.00139 * 0.02562 * 9 7 2 11 11 N 1.34780 * 119.99532 * 180.02562 * 9 7 2 12 12 C 1.47579 * 134.49011 * 180.02562 * 11 9 7 13 13 C 1.53946 * 86.11621 * 204.63034 * 12 11 9 14 14 O 1.42905 * 113.73825 * 90.74064 * 13 12 11 15 15 C 1.53000 * 113.74445 * 221.93637 * 13 12 11 16 16 F 1.39896 * 109.47127 * 298.08104 * 15 13 12 17 17 F 1.39901 * 109.46542 * 58.07885 * 15 13 12 18 18 F 1.39899 * 109.47257 * 178.07751 * 15 13 12 19 19 C 1.47925 * 134.50199 * 359.97438 * 11 9 7 20 20 H 0.96995 * 119.99692 * 359.97438 * 1 2 3 21 21 H 1.09003 * 113.77049 * 90.33442 * 12 11 9 22 22 H 1.09001 * 113.77315 * 318.93463 * 12 11 9 23 23 H 0.96698 * 113.99668 * 181.92853 * 14 13 12 24 24 H 1.08992 * 113.87350 * 41.10696 * 19 11 9 25 25 H 1.09003 * 113.76868 * 269.60602 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3463 -0.0006 5 1 1.8820 2.3965 -1.2124 6 1 1.8821 2.3963 1.2126 7 6 2.0070 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0582 -2.4804 -0.0005 11 7 1.9489 -3.6477 -0.0005 12 6 1.5543 -5.0698 -0.0010 13 6 2.9273 -5.3428 0.6396 14 8 2.9111 -5.3158 2.0683 15 6 3.6368 -6.5749 0.0744 16 9 2.8654 -7.7142 0.3274 17 9 3.8057 -6.4233 -1.3061 18 9 4.8879 -6.7136 0.6848 19 6 3.3810 -4.0182 -0.0010 20 1 -0.4849 0.8400 0.0004 21 1 1.4428 -5.4945 -0.9987 22 1 0.7118 -5.2922 0.6539 23 1 3.7772 -5.4577 2.4741 24 1 3.9964 -3.4014 0.6539 25 1 3.8043 -4.1350 -0.9987 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000409434572.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:31 Heat of formation + Delta-G solvation = -195.864979 kcal Electronic energy + Delta-G solvation = -17584.941270 eV Core-core repulsion = 13957.296556 eV Total energy + Delta-G solvation = -3627.644714 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.056 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -50.14306 -47.69153 -47.60371 -39.59320 -36.49491 -34.76886 -32.56272 -29.31252 -26.90492 -25.79564 -24.81973 -21.19112 -19.35935 -18.73853 -18.42341 -18.31452 -16.85727 -15.90921 -15.38760 -14.79085 -14.50201 -14.29263 -14.13418 -14.07228 -14.05861 -13.77999 -13.72610 -13.45285 -12.94874 -12.31737 -11.87864 -11.70164 -11.15512 -11.05191 -10.98232 -10.43764 -10.27405 -10.19208 -8.95665 -7.80009 -7.52945 -6.30440 -4.75983 2.58935 3.08066 3.15824 3.20525 3.56111 3.57052 3.77336 3.90045 4.09133 4.32485 4.48741 4.65205 5.23794 5.59125 5.66740 5.85493 5.94549 6.14836 6.44499 7.33924 7.34035 7.94323 8.28505 8.91110 9.34724 10.43723 10.63356 Molecular weight = 239.06amu Principal moments of inertia in cm(-1) A = 0.045108 B = 0.006723 C = 0.006382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.587810 B = 4163.982021 C = 4386.133550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.086 3.914 3 Si 0.913 3.087 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.534 4.534 8 H 0.070 0.930 9 C 0.581 3.419 10 O -0.567 6.567 11 N -0.649 5.649 12 C 0.130 3.870 13 C 0.045 3.955 14 O -0.500 6.500 15 C 0.433 3.567 16 F -0.178 7.178 17 F -0.174 7.174 18 F -0.186 7.186 19 C 0.101 3.899 20 H 0.271 0.729 21 H 0.087 0.913 22 H 0.090 0.910 23 H 0.383 0.617 24 H 0.091 0.909 25 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.835 -9.863 0.576 13.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.134 4.134 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.570 4.570 8 H 0.088 0.912 9 C 0.389 3.611 10 O -0.448 6.448 11 N -0.391 5.391 12 C 0.005 3.995 13 C 0.000 4.000 14 O -0.305 6.305 15 C 0.377 3.623 16 F -0.159 7.159 17 F -0.155 7.155 18 F -0.168 7.168 19 C -0.024 4.024 20 H 0.081 0.919 21 H 0.105 0.895 22 H 0.109 0.891 23 H 0.232 0.768 24 H 0.109 0.891 25 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.207 -9.431 0.476 12.511 hybrid contribution 1.339 0.286 -0.010 1.369 sum 9.545 -9.145 0.466 13.227 Atomic orbital electron populations 1.70018 1.07134 1.27555 1.34737 1.25746 0.94703 1.00441 0.92534 0.86228 0.80404 0.81303 0.78346 1.18683 1.20017 1.20001 1.20807 0.93631 0.88484 1.54103 0.91183 1.18117 0.86548 0.80387 0.76003 1.90637 1.13672 1.84975 1.55548 1.50204 1.04552 1.03569 1.80793 1.22793 0.92897 0.85112 0.98657 1.24594 1.00853 0.90028 0.84568 1.86730 1.35472 1.94204 1.14129 1.21509 0.77477 0.86622 0.76669 1.93194 1.74933 1.53969 1.93844 1.93185 1.95464 1.95642 1.31249 1.93154 1.44177 1.96470 1.82964 1.23473 0.88679 0.90247 1.00038 0.91867 0.89497 0.89132 0.76782 0.89084 0.89579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.77 11.83 55.55 0.66 -22.12 15 2 C 0.09 2.37 5.50 -17.36 -0.10 2.27 15 3 Si 0.91 19.79 29.56 -169.99 -5.02 14.76 15 4 H -0.26 -5.47 7.11 56.52 0.40 -5.07 15 5 H -0.27 -5.83 7.11 56.52 0.40 -5.43 15 6 H -0.27 -5.84 7.11 56.52 0.40 -5.44 15 7 C -0.53 -14.98 9.33 -35.63 -0.33 -15.31 15 8 H 0.07 1.80 7.68 -52.49 -0.40 1.40 15 9 C 0.58 16.77 7.98 -12.98 -0.10 16.67 15 10 O -0.57 -18.66 15.75 5.20 0.08 -18.58 15 11 N -0.65 -14.83 3.62 -179.60 -0.65 -15.48 15 12 C 0.13 2.41 8.05 -2.97 -0.02 2.39 15 13 C 0.04 0.68 1.43 -89.68 -0.13 0.55 15 14 O -0.50 -7.49 13.50 -35.23 -0.48 -7.97 15 15 C 0.43 5.70 2.85 37.16 0.11 5.81 15 16 F -0.18 -2.43 17.22 2.25 0.04 -2.39 15 17 F -0.17 -2.34 15.75 2.25 0.04 -2.30 15 18 F -0.19 -2.23 16.72 2.25 0.04 -2.19 15 19 C 0.10 1.72 7.76 -2.76 -0.02 1.70 15 20 H 0.27 7.23 8.29 -40.82 -0.34 6.89 15 21 H 0.09 1.44 7.84 -51.93 -0.41 1.03 15 22 H 0.09 1.76 8.14 -51.93 -0.42 1.34 15 23 H 0.38 3.84 8.50 45.56 0.39 4.23 15 24 H 0.09 1.47 8.14 -51.93 -0.42 1.05 15 25 H 0.09 1.31 7.18 -51.93 -0.37 0.94 15 LS Contribution 243.94 15.07 3.68 3.68 Total: -1.00 -34.57 243.94 -3.00 -37.57 By element: Atomic # 1 Polarization: 1.71 SS G_CDS: -0.77 Total: 0.94 kcal Atomic # 6 Polarization: 14.68 SS G_CDS: -0.60 Total: 14.08 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.01 Total: -37.60 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.39 Total: -26.55 kcal Atomic # 9 Polarization: -6.99 SS G_CDS: 0.11 Total: -6.88 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -34.57 -3.00 -37.57 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409434572.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.298 kcal (2) G-P(sol) polarization free energy of solvation -34.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds