Wall clock time and date at job start Mon Mar 30 2020 03:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86804 * 120.00312 * 2 1 4 4 H 1.48502 * 109.47027 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47213 * 300.00639 * 3 2 1 6 6 H 1.48499 * 109.46547 * 60.00505 * 3 2 1 7 7 C 1.40054 * 120.00129 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00416 * 179.97438 * 7 2 1 9 9 C 1.46380 * 119.99426 * 359.97438 * 7 2 1 10 10 O 1.21683 * 120.00139 * 0.02562 * 9 7 2 11 11 N 1.34780 * 119.99532 * 180.02562 * 9 7 2 12 12 C 1.47579 * 134.49011 * 180.02562 * 11 9 7 13 13 C 1.53946 * 86.11621 * 204.63034 * 12 11 9 14 14 O 1.42905 * 113.73825 * 90.74064 * 13 12 11 15 15 C 1.53000 * 113.74445 * 221.93637 * 13 12 11 16 16 F 1.39896 * 109.47127 * 298.08104 * 15 13 12 17 17 F 1.39901 * 109.46542 * 58.07885 * 15 13 12 18 18 F 1.39899 * 109.47257 * 178.07751 * 15 13 12 19 19 C 1.47925 * 134.50199 * 359.97438 * 11 9 7 20 20 H 0.96995 * 119.99692 * 359.97438 * 1 2 3 21 21 H 1.09003 * 113.77049 * 90.33442 * 12 11 9 22 22 H 1.09001 * 113.77315 * 318.93463 * 12 11 9 23 23 H 0.96698 * 113.99668 * 181.92853 * 14 13 12 24 24 H 1.08992 * 113.87350 * 41.10696 * 19 11 9 25 25 H 1.09003 * 113.76868 * 269.60602 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3463 -0.0006 5 1 1.8820 2.3965 -1.2124 6 1 1.8821 2.3963 1.2126 7 6 2.0070 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2750 -2.4805 -0.0005 10 8 0.0582 -2.4804 -0.0005 11 7 1.9489 -3.6477 -0.0005 12 6 1.5543 -5.0698 -0.0010 13 6 2.9273 -5.3428 0.6396 14 8 2.9111 -5.3158 2.0683 15 6 3.6368 -6.5749 0.0744 16 9 2.8654 -7.7142 0.3274 17 9 3.8057 -6.4233 -1.3061 18 9 4.8879 -6.7136 0.6848 19 6 3.3810 -4.0182 -0.0010 20 1 -0.4849 0.8400 0.0004 21 1 1.4428 -5.4945 -0.9987 22 1 0.7118 -5.2922 0.6539 23 1 3.7772 -5.4577 2.4741 24 1 3.9964 -3.4014 0.6539 25 1 3.8043 -4.1350 -0.9987 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000409434572.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:31 Heat of formation + Delta-G solvation = -224.051463 kcal Electronic energy + Delta-G solvation = -17586.163527 eV Core-core repulsion = 13957.296556 eV Total energy + Delta-G solvation = -3628.866972 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.056 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -51.22147 -48.74097 -48.69065 -41.10158 -38.42128 -36.29545 -34.67751 -30.94843 -28.69531 -27.29131 -26.42772 -22.63403 -20.97572 -20.09552 -19.52996 -19.41489 -18.64408 -17.80901 -16.88177 -16.31221 -15.81869 -15.66071 -15.59656 -15.45894 -15.12836 -14.92645 -14.85312 -14.82318 -14.33165 -14.08316 -13.78516 -13.25977 -12.94655 -12.79121 -12.70776 -12.08907 -11.96129 -11.53529 -10.98950 -9.97731 -9.38076 -8.35402 -6.92152 1.37016 1.39958 1.43052 1.59022 2.11594 2.31028 2.34501 2.39407 2.53766 2.73713 3.10957 3.43966 3.55762 3.89930 4.29243 4.40060 4.49113 4.70373 4.90013 5.27676 5.88289 6.29807 6.40333 6.80731 7.38500 8.34314 8.60450 Molecular weight = 239.06amu Principal moments of inertia in cm(-1) A = 0.045108 B = 0.006723 C = 0.006382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.587810 B = 4163.982021 C = 4386.133550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.027 3.973 3 Si 1.003 2.997 4 H -0.244 1.244 5 H -0.267 1.267 6 H -0.268 1.268 7 C -0.559 4.559 8 H 0.090 0.910 9 C 0.562 3.438 10 O -0.628 6.628 11 N -0.670 5.670 12 C 0.117 3.883 13 C 0.068 3.932 14 O -0.516 6.516 15 C 0.451 3.549 16 F -0.178 7.178 17 F -0.172 7.172 18 F -0.172 7.172 19 C 0.101 3.899 20 H 0.277 0.723 21 H 0.108 0.892 22 H 0.073 0.927 23 H 0.406 0.594 24 H 0.102 0.898 25 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.468 -9.865 0.561 15.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.188 4.188 3 Si 0.822 3.178 4 H -0.167 1.167 5 H -0.192 1.192 6 H -0.193 1.193 7 C -0.595 4.595 8 H 0.108 0.892 9 C 0.371 3.629 10 O -0.515 6.515 11 N -0.409 5.409 12 C -0.006 4.006 13 C 0.022 3.978 14 O -0.325 6.325 15 C 0.396 3.604 16 F -0.159 7.159 17 F -0.153 7.153 18 F -0.154 7.154 19 C -0.023 4.023 20 H 0.087 0.913 21 H 0.126 0.874 22 H 0.092 0.908 23 H 0.259 0.741 24 H 0.120 0.880 25 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 10.920 -9.506 0.471 14.486 hybrid contribution 0.546 0.155 0.019 0.568 sum 11.466 -9.352 0.490 14.804 Atomic orbital electron populations 1.70189 1.09693 1.29227 1.36020 1.27062 0.95573 1.05106 0.91059 0.84893 0.79388 0.74914 0.78625 1.16655 1.19206 1.19295 1.21333 0.94705 0.89105 1.54399 0.89209 1.18448 0.86184 0.82515 0.75768 1.90572 1.16130 1.86704 1.58120 1.49905 1.07665 1.03891 1.79457 1.23031 0.94543 0.82986 1.00057 1.23964 0.98401 0.90597 0.84792 1.86700 1.37687 1.94267 1.13814 1.20844 0.77601 0.85445 0.76552 1.93207 1.75108 1.53725 1.93858 1.93202 1.95442 1.95584 1.31073 1.93192 1.43110 1.96323 1.82740 1.23781 0.85684 0.90916 1.01880 0.91310 0.87418 0.90845 0.74127 0.87958 0.87222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -50.33 11.83 21.84 0.26 -50.07 15 2 C 0.03 1.50 5.50 85.31 0.47 1.97 15 3 Si 1.00 40.15 29.56 68.60 2.03 42.18 15 4 H -0.24 -8.89 7.11 99.48 0.71 -8.18 15 5 H -0.27 -10.28 7.11 99.48 0.71 -9.57 15 6 H -0.27 -10.35 7.11 99.48 0.71 -9.64 15 7 C -0.56 -31.57 9.33 24.83 0.23 -31.34 15 8 H 0.09 4.51 7.68 -2.91 -0.02 4.49 15 9 C 0.56 33.34 7.98 86.36 0.69 34.03 15 10 O -0.63 -43.35 15.75 -4.30 -0.07 -43.42 15 11 N -0.67 -30.63 3.62 -844.19 -3.05 -33.68 15 12 C 0.12 4.33 8.05 86.49 0.70 5.02 15 13 C 0.07 1.93 1.43 -10.12 -0.01 1.91 15 14 O -0.52 -14.42 13.50 -148.98 -2.01 -16.44 15 15 C 0.45 10.53 2.85 71.98 0.20 10.73 15 16 F -0.18 -4.38 17.22 44.97 0.77 -3.60 15 17 F -0.17 -4.07 15.75 44.97 0.71 -3.36 15 18 F -0.17 -3.48 16.72 44.97 0.75 -2.73 15 19 C 0.10 3.22 7.76 86.43 0.67 3.89 15 20 H 0.28 15.23 8.29 -92.71 -0.77 14.46 15 21 H 0.11 3.47 7.84 -2.39 -0.02 3.45 15 22 H 0.07 2.93 8.14 -2.39 -0.02 2.92 15 23 H 0.41 6.95 8.50 -74.06 -0.63 6.32 15 24 H 0.10 3.04 8.14 -2.39 -0.02 3.02 15 25 H 0.11 3.01 7.18 -2.39 -0.02 2.99 15 Total: -1.00 -77.61 243.94 2.96 -74.65 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 0.63 Total: 10.25 kcal Atomic # 6 Polarization: 23.27 SS G_CDS: 2.95 Total: 26.22 kcal Atomic # 7 Polarization: -80.96 SS G_CDS: -2.79 Total: -83.75 kcal Atomic # 8 Polarization: -57.78 SS G_CDS: -2.08 Total: -59.86 kcal Atomic # 9 Polarization: -11.93 SS G_CDS: 2.23 Total: -9.69 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.18 kcal Total: -77.61 2.96 -74.65 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000409434572.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.401 kcal (2) G-P(sol) polarization free energy of solvation -77.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds