Wall clock time and date at job start Mon Mar 30 2020 03:59:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86792 * 120.00299 * 2 1 4 4 H 1.48498 * 109.47447 * 270.00257 * 3 2 1 5 5 H 1.48499 * 109.47073 * 30.00249 * 3 2 1 6 6 H 1.48501 * 109.47143 * 150.00038 * 3 2 1 7 7 C 1.40068 * 119.99574 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99829 * 179.97438 * 7 2 1 9 9 C 1.39911 * 120.00318 * 359.97438 * 7 2 1 10 10 C 1.38288 * 125.41034 * 180.02562 * 9 7 2 11 11 C 1.36803 * 114.20206 * 180.02562 * 10 9 7 12 12 C 1.50697 * 122.33159 * 179.97438 * 11 10 9 13 13 O 1.42905 * 110.28435 * 29.30491 * 12 11 10 14 14 C 1.54259 * 110.32360 * 151.42777 * 12 11 10 15 15 C 1.54384 * 105.06044 * 119.00124 * 14 12 11 16 16 N 1.48562 * 104.59069 * 23.85401 * 15 14 12 17 17 C 1.48565 * 104.22205 * 320.51394 * 16 15 14 18 18 C 1.34538 * 115.34029 * 0.27299 * 11 10 9 19 19 S 1.75792 * 110.14600 * 359.59207 * 18 11 10 20 20 H 0.96998 * 119.99738 * 359.97438 * 1 2 3 21 21 H 1.07996 * 122.89580 * 0.02562 * 10 9 7 22 22 H 0.96705 * 113.99788 * 302.12559 * 13 12 11 23 23 H 1.09000 * 110.32121 * 237.89805 * 14 12 11 24 24 H 1.08997 * 110.32519 * 0.10678 * 14 12 11 25 25 H 1.08996 * 110.41250 * 142.62571 * 15 14 12 26 26 H 1.08997 * 110.41249 * 264.95800 * 15 14 12 27 27 H 1.00904 * 110.99707 * 200.96185 * 16 15 14 28 28 H 1.09004 * 110.41251 * 280.70432 * 17 16 15 29 29 H 1.08998 * 110.40856 * 158.26509 * 17 16 15 30 30 H 1.08003 * 124.92533 * 179.69564 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6176 0.0000 4 1 2.4903 2.0464 -1.4000 5 1 1.4403 2.6526 0.7001 6 1 3.5404 1.4400 0.7000 7 6 2.0090 -1.2131 -0.0005 8 1 3.0890 -1.2131 -0.0010 9 6 1.3094 -2.4247 -0.0005 10 6 1.8848 -3.6822 -0.0005 11 6 0.9836 -4.7114 -0.0011 12 6 1.4105 -6.1566 -0.0018 13 8 2.6719 -6.3009 0.6543 14 6 0.3440 -7.0307 0.6896 15 6 -0.1279 -8.0216 -0.3962 16 7 1.0042 -8.0926 -1.3555 17 6 1.4934 -6.6928 -1.4470 18 6 -0.3105 -4.3435 -0.0074 19 16 -0.4417 -2.5905 -0.0013 20 1 -0.4850 0.8400 0.0004 21 1 2.9535 -3.8382 -0.0001 22 1 3.3816 -5.7737 0.2625 23 1 0.7826 -7.5698 1.5293 24 1 -0.4892 -6.4147 1.0277 25 1 -0.3179 -9.0020 0.0406 26 1 -1.0240 -7.6461 -0.8900 27 1 0.6948 -8.4271 -2.2558 28 1 0.8522 -6.1083 -2.1068 29 1 2.5240 -6.6728 -1.8014 30 1 -1.1474 -5.0262 -0.0134 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687812533.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:05 Heat of formation + Delta-G solvation = -55.338309 kcal Electronic energy + Delta-G solvation = -14908.985923 eV Core-core repulsion = 12407.877609 eV Total energy + Delta-G solvation = -2501.108314 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.63233 -37.36455 -36.23479 -35.55297 -31.71718 -30.29446 -28.75506 -26.74864 -24.08378 -22.79352 -21.41476 -20.04114 -19.28140 -17.72290 -17.47929 -16.83836 -16.66766 -15.91122 -15.10343 -14.90441 -14.27672 -14.00567 -13.72150 -13.60270 -13.19966 -13.11677 -12.98264 -12.65679 -12.52558 -12.45456 -12.06847 -11.99413 -11.61969 -11.26019 -11.11994 -10.57418 -9.62603 -9.33539 -8.80457 -8.65008 -6.47838 0.78360 1.36711 1.48663 1.53316 1.70548 2.06580 2.18177 2.24622 3.07230 3.30033 3.43768 3.78143 3.87571 4.19652 4.26558 4.65454 4.68029 4.71698 4.82947 4.94150 5.00278 5.05531 5.11824 5.25668 5.58967 5.68261 5.90660 6.15297 6.23341 6.38242 6.62570 6.64796 6.84846 8.06384 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.049224 B = 0.006642 C = 0.006179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.688776 B = 4214.860924 C = 4530.339007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.014 3.986 3 Si 1.008 2.992 4 H -0.258 1.258 5 H -0.262 1.262 6 H -0.256 1.256 7 C -0.423 4.423 8 H 0.096 0.904 9 C 0.009 3.991 10 C -0.369 4.369 11 C -0.059 4.059 12 C 0.187 3.813 13 O -0.562 6.562 14 C -0.116 4.116 15 C 0.042 3.958 16 N -0.662 5.662 17 C 0.027 3.973 18 C -0.409 4.409 19 S 0.099 5.901 20 H 0.306 0.694 21 H 0.104 0.896 22 H 0.381 0.619 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.101 0.899 26 H 0.049 0.951 27 H 0.347 0.653 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.057 -4.971 -2.345 5.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.204 4.204 3 Si 0.827 3.173 4 H -0.182 1.182 5 H -0.186 1.186 6 H -0.179 1.179 7 C -0.458 4.458 8 H 0.114 0.886 9 C -0.111 4.111 10 C -0.394 4.394 11 C -0.071 4.071 12 C 0.143 3.857 13 O -0.370 6.370 14 C -0.154 4.154 15 C -0.087 4.087 16 N -0.291 5.291 17 C -0.103 4.103 18 C -0.544 4.544 19 S 0.359 5.641 20 H 0.119 0.881 21 H 0.122 0.878 22 H 0.230 0.770 23 H 0.093 0.907 24 H 0.097 0.903 25 H 0.119 0.881 26 H 0.067 0.933 27 H 0.163 0.837 28 H 0.060 0.940 29 H 0.104 0.896 30 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -1.323 -4.591 -1.511 5.011 hybrid contribution 0.998 0.594 -0.839 1.432 sum -0.325 -3.997 -2.350 4.648 Atomic orbital electron populations 1.68923 1.08955 1.32029 1.33755 1.27165 0.95884 1.05673 0.91669 0.84758 0.78663 0.74007 0.79840 1.18239 1.18638 1.17916 1.19493 0.95788 0.89732 1.40792 0.88610 1.22188 0.95443 0.96721 0.96765 1.19611 0.98065 0.91047 1.30676 1.18802 0.92922 0.95003 1.00353 1.20452 0.84128 0.89780 0.91305 1.86434 1.19582 1.70874 1.60075 1.22476 0.96931 0.96970 0.98983 1.22936 0.92474 0.99911 0.93379 1.63712 1.31769 1.19464 1.14203 1.23425 1.01318 0.89553 0.96021 1.25372 0.98703 1.01136 1.29147 1.84352 1.05951 0.97489 1.76269 0.88137 0.87787 0.77041 0.90718 0.90346 0.88069 0.93258 0.83659 0.94037 0.89626 0.84619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.49 10.65 21.86 0.23 -39.25 16 2 C 0.01 0.64 5.50 85.28 0.47 1.11 16 3 Si 1.01 35.34 29.56 68.60 2.03 37.37 16 4 H -0.26 -8.69 7.11 99.48 0.71 -7.98 16 5 H -0.26 -8.67 7.11 99.48 0.71 -7.96 16 6 H -0.26 -8.76 7.11 99.48 0.71 -8.06 16 7 C -0.42 -21.90 9.29 23.12 0.21 -21.68 16 8 H 0.10 4.71 7.85 -2.91 -0.02 4.68 16 9 C 0.01 0.48 6.19 22.69 0.14 0.62 16 10 C -0.37 -18.64 9.48 21.94 0.21 -18.43 16 11 C -0.06 -2.72 4.64 -21.05 -0.10 -2.82 16 12 C 0.19 7.21 1.33 -10.65 -0.01 7.19 16 13 O -0.56 -21.99 12.76 -148.98 -1.90 -23.89 16 14 C -0.12 -3.96 6.16 31.49 0.19 -3.76 16 15 C 0.04 1.15 7.47 86.45 0.65 1.79 16 16 N -0.66 -18.65 7.62 -500.85 -3.82 -22.46 16 17 C 0.03 0.90 6.75 86.45 0.58 1.48 16 18 C -0.41 -19.21 9.87 66.97 0.66 -18.55 16 19 S 0.10 5.08 20.27 -56.49 -1.14 3.93 16 20 H 0.31 13.27 8.30 -92.71 -0.77 12.50 16 21 H 0.10 4.95 6.92 -2.91 -0.02 4.93 16 22 H 0.38 13.12 7.66 -74.05 -0.57 12.55 16 23 H 0.07 2.55 7.98 -2.39 -0.02 2.54 16 24 H 0.08 2.79 5.82 -2.39 -0.01 2.77 16 25 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.35 7.88 8.92 -89.69 -0.80 7.08 16 28 H 0.04 1.46 7.86 -2.39 -0.02 1.44 16 29 H 0.09 2.73 8.08 -2.39 -0.02 2.71 16 30 H 0.14 5.77 6.82 -2.91 -0.02 5.75 16 Total: -1.00 -59.08 261.37 -1.79 -60.87 By element: Atomic # 1 Polarization: 36.66 SS G_CDS: -0.19 Total: 36.47 kcal Atomic # 6 Polarization: -56.05 SS G_CDS: 3.00 Total: -53.04 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: -3.59 Total: -61.72 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -1.90 Total: -23.89 kcal Atomic # 14 Polarization: 35.34 SS G_CDS: 2.03 Total: 37.37 kcal Atomic # 16 Polarization: 5.08 SS G_CDS: -1.14 Total: 3.93 kcal Total: -59.08 -1.79 -60.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687812533.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.534 kcal (2) G-P(sol) polarization free energy of solvation -59.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds