Wall clock time and date at job start Mon Mar 30 2020 03:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47544 * 2 1 4 4 C 1.53001 * 109.46884 * 239.99827 * 2 1 3 5 5 C 1.50705 * 109.46705 * 65.00479 * 4 2 1 6 6 H 1.07999 * 120.00263 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99885 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00058 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00248 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47100 * 90.00036 * 9 7 5 11 11 H 1.48504 * 109.47233 * 210.00300 * 9 7 5 12 12 H 1.48510 * 109.47027 * 330.00183 * 9 7 5 13 13 N 1.46498 * 109.46999 * 120.00526 * 2 1 3 14 14 C 1.35888 * 124.89971 * 34.99591 * 13 2 1 15 15 C 1.35945 * 107.07063 * 179.97438 * 14 13 2 16 16 N 1.40228 * 127.28359 * 179.97438 * 15 14 13 17 17 C 1.41916 * 105.42351 * 0.02562 * 15 14 13 18 18 C 1.47325 * 126.46909 * 179.97438 * 17 15 14 19 19 O 1.21516 * 120.00010 * 359.97438 * 18 17 15 20 20 O 1.34765 * 119.99777 * 179.97438 * 18 17 15 21 21 N 1.28454 * 124.89442 * 214.97187 * 13 2 1 22 22 H 1.09000 * 109.46603 * 299.99789 * 1 2 3 23 23 H 1.09001 * 109.46755 * 59.99509 * 1 2 3 24 24 H 1.08996 * 109.47544 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47098 * 184.99957 * 4 2 1 26 26 H 1.08994 * 109.47701 * 305.00553 * 4 2 1 27 27 H 0.97004 * 120.00055 * 179.97438 * 8 7 5 28 28 H 1.07994 * 126.45918 * 0.24027 * 14 13 2 29 29 H 0.96997 * 120.00054 * 0.02562 * 16 15 14 30 30 H 0.97002 * 119.99737 * 180.02562 * 16 15 14 31 31 H 0.96698 * 117.00285 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.6413 0.0571 -2.4766 6 1 1.0800 0.9743 -2.3757 7 6 1.9931 -0.4016 -3.7283 8 7 2.6771 -1.5182 -3.8512 9 14 1.4984 0.5628 -5.2496 10 1 2.5631 1.5431 -5.5822 11 1 1.3120 -0.3712 -6.3890 12 1 0.2266 1.2834 -4.9871 13 7 2.0183 -0.6907 1.1961 14 6 1.4167 -1.7630 1.7748 15 6 2.1698 -2.1099 2.8520 16 7 1.9336 -3.1600 3.7509 17 6 3.2449 -1.1839 2.8749 18 6 4.3413 -1.1391 3.8580 19 8 4.3807 -1.9506 4.7616 20 8 5.3005 -0.1981 3.7551 21 7 3.0772 -0.3703 1.8489 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.1263 -0.7995 -1.2056 26 1 1.6053 -1.7198 -1.2953 27 1 2.9243 -1.8411 -4.7318 28 1 0.5133 -2.2504 1.4393 29 1 1.1595 -3.7328 3.6350 30 1 2.5444 -3.3134 4.4887 31 1 5.9991 -0.2084 4.4236 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000709995233.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:53 Heat of formation + Delta-G solvation = -24.985793 kcal Electronic energy + Delta-G solvation = -16737.633785 eV Core-core repulsion = 13827.381534 eV Total energy + Delta-G solvation = -2910.252250 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.16813 -39.60740 -36.05359 -35.59197 -34.03504 -32.49295 -29.93164 -28.63695 -27.22680 -24.95033 -23.39195 -21.63545 -20.34651 -19.68694 -17.76308 -17.22053 -16.65363 -15.99228 -15.77673 -15.69527 -14.94857 -14.51956 -14.32441 -13.54513 -13.22681 -12.59726 -12.50912 -12.11782 -11.67919 -11.41409 -11.12972 -11.03835 -11.00197 -10.62401 -10.56657 -10.54096 -10.22045 -9.82080 -9.39847 -8.72376 -8.52436 -7.20636 -6.16434 -4.21925 1.69083 2.63019 2.85862 3.24006 3.30611 3.31973 3.36119 3.52711 4.26436 4.34574 4.91216 5.19866 5.28833 5.46222 5.63705 5.79809 5.80898 5.91600 6.27852 6.40236 6.47688 6.59360 6.61246 7.20223 7.41092 7.47838 7.72380 7.79137 8.01231 8.11694 8.13818 8.49424 8.82404 9.43171 10.94713 Molecular weight = 239.11amu Principal moments of inertia in cm(-1) A = 0.036621 B = 0.005495 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.404646 B = 5094.422702 C = 5360.692052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.141 3.859 3 H 0.101 0.899 4 C 0.019 3.981 5 C -0.525 4.525 6 H 0.062 0.938 7 C 0.062 3.938 8 N -0.889 5.889 9 Si 0.898 3.102 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.228 5.228 14 C -0.101 4.101 15 C 0.148 3.852 16 N -0.860 5.860 17 C -0.089 4.089 18 C 0.584 3.416 19 O -0.533 6.533 20 O -0.501 6.501 21 N -0.211 5.211 22 H 0.047 0.953 23 H 0.093 0.907 24 H 0.061 0.939 25 H 0.028 0.972 26 H 0.027 0.973 27 H 0.264 0.736 28 H 0.177 0.823 29 H 0.396 0.604 30 H 0.407 0.593 31 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.292 0.024 12.077 12.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.042 3.958 3 H 0.119 0.881 4 C -0.019 4.019 5 C -0.563 4.563 6 H 0.081 0.919 7 C -0.141 4.141 8 N -0.527 5.527 9 Si 0.725 3.275 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.197 1.197 13 N -0.022 5.022 14 C -0.247 4.247 15 C 0.037 3.963 16 N -0.407 5.407 17 C -0.244 4.244 18 C 0.429 3.571 19 O -0.422 6.422 20 O -0.311 6.311 21 N -0.054 5.054 22 H 0.066 0.934 23 H 0.111 0.889 24 H 0.080 0.920 25 H 0.046 0.954 26 H 0.045 0.955 27 H 0.073 0.927 28 H 0.194 0.806 29 H 0.224 0.776 30 H 0.237 0.763 31 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -2.032 0.710 11.261 11.465 hybrid contribution -0.126 -0.623 0.058 0.639 sum -2.158 0.087 11.319 11.523 Atomic orbital electron populations 1.22058 0.92999 1.02883 1.02608 1.22252 0.95021 0.97457 0.81035 0.88062 1.19510 0.97565 0.96070 0.88728 1.20977 1.36398 1.08777 0.90193 0.91943 1.24999 0.94812 0.95002 0.99284 1.69971 1.37834 1.20906 1.23964 0.86504 0.79008 0.79701 0.82276 1.20486 1.21149 1.19686 1.46117 1.14829 1.20857 1.20424 1.21931 1.05070 0.98577 0.99158 1.17452 0.93923 0.91926 0.93043 1.41541 1.32716 1.33927 1.32491 1.19997 1.00135 1.03011 1.01211 1.19225 0.79404 0.76985 0.81525 1.90797 1.76426 1.40525 1.34402 1.84708 1.36815 1.53282 1.56250 1.73619 1.04665 1.22709 1.04432 0.93397 0.88853 0.92016 0.95383 0.95488 0.92662 0.80611 0.77593 0.76286 0.73487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 8.62 37.16 0.32 -2.03 16 2 C 0.14 2.72 3.22 -67.93 -0.22 2.50 16 3 H 0.10 1.95 8.14 -51.93 -0.42 1.53 16 4 C 0.02 0.47 4.77 -27.88 -0.13 0.33 16 5 C -0.52 -13.50 8.41 -34.44 -0.29 -13.79 16 6 H 0.06 1.51 7.06 -52.49 -0.37 1.14 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -25.58 13.29 55.43 0.74 -24.84 16 9 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 12 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 13 N -0.23 -4.33 3.24 -54.46 -0.18 -4.50 16 14 C -0.10 -1.69 10.60 -16.58 -0.18 -1.86 16 15 C 0.15 2.47 7.37 -83.43 -0.61 1.85 16 16 N -0.86 -11.39 9.15 32.57 0.30 -11.09 16 17 C -0.09 -1.65 7.16 -82.69 -0.59 -2.24 16 18 C 0.58 9.70 8.33 34.43 0.29 9.99 16 19 O -0.53 -8.97 16.14 -19.28 -0.31 -9.28 16 20 O -0.50 -6.98 13.44 -40.67 -0.55 -7.53 16 21 N -0.21 -4.22 11.98 33.45 0.40 -3.82 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.09 1.53 6.95 -51.93 -0.36 1.16 16 24 H 0.06 0.93 7.07 -51.93 -0.37 0.56 16 25 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.18 2.46 7.19 -52.49 -0.38 2.08 16 29 H 0.40 4.08 8.96 -40.82 -0.37 3.71 16 30 H 0.41 5.40 7.27 -40.82 -0.30 5.10 16 31 H 0.41 3.26 9.11 45.56 0.42 3.67 16 LS Contribution 276.52 15.07 4.17 4.17 Total: -1.00 -31.63 276.52 -4.52 -36.15 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -2.55 Total: 9.04 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -1.51 Total: -3.69 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 1.26 Total: -44.26 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.86 Total: -16.81 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.63 -4.52 -36.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709995233.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.163 kcal (2) G-P(sol) polarization free energy of solvation -31.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds