Wall clock time and date at job start Mon Mar 30 2020 03:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47544 * 2 1 4 4 C 1.53001 * 109.46884 * 239.99827 * 2 1 3 5 5 C 1.50705 * 109.46705 * 65.00479 * 4 2 1 6 6 H 1.07999 * 120.00263 * 359.97438 * 5 4 2 7 7 C 1.37876 * 119.99885 * 179.97438 * 5 4 2 8 8 N 1.31517 * 120.00058 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00248 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.47100 * 90.00036 * 9 7 5 11 11 H 1.48504 * 109.47233 * 210.00300 * 9 7 5 12 12 H 1.48510 * 109.47027 * 330.00183 * 9 7 5 13 13 N 1.46498 * 109.46999 * 120.00526 * 2 1 3 14 14 C 1.35888 * 124.89971 * 34.99591 * 13 2 1 15 15 C 1.35945 * 107.07063 * 179.97438 * 14 13 2 16 16 N 1.40228 * 127.28359 * 179.97438 * 15 14 13 17 17 C 1.41916 * 105.42351 * 0.02562 * 15 14 13 18 18 C 1.47325 * 126.46909 * 179.97438 * 17 15 14 19 19 O 1.21516 * 120.00010 * 359.97438 * 18 17 15 20 20 O 1.34765 * 119.99777 * 179.97438 * 18 17 15 21 21 N 1.28454 * 124.89442 * 214.97187 * 13 2 1 22 22 H 1.09000 * 109.46603 * 299.99789 * 1 2 3 23 23 H 1.09001 * 109.46755 * 59.99509 * 1 2 3 24 24 H 1.08996 * 109.47544 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47098 * 184.99957 * 4 2 1 26 26 H 1.08994 * 109.47701 * 305.00553 * 4 2 1 27 27 H 0.97004 * 120.00055 * 179.97438 * 8 7 5 28 28 H 1.07994 * 126.45918 * 0.24027 * 14 13 2 29 29 H 0.96997 * 120.00054 * 0.02562 * 16 15 14 30 30 H 0.97002 * 119.99737 * 180.02562 * 16 15 14 31 31 H 0.96698 * 117.00285 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.6413 0.0571 -2.4766 6 1 1.0800 0.9743 -2.3757 7 6 1.9931 -0.4016 -3.7283 8 7 2.6771 -1.5182 -3.8512 9 14 1.4984 0.5628 -5.2496 10 1 2.5631 1.5431 -5.5822 11 1 1.3120 -0.3712 -6.3890 12 1 0.2266 1.2834 -4.9871 13 7 2.0183 -0.6907 1.1961 14 6 1.4167 -1.7630 1.7748 15 6 2.1698 -2.1099 2.8520 16 7 1.9336 -3.1600 3.7509 17 6 3.2449 -1.1839 2.8749 18 6 4.3413 -1.1391 3.8580 19 8 4.3807 -1.9506 4.7616 20 8 5.3005 -0.1981 3.7551 21 7 3.0772 -0.3703 1.8489 22 1 -0.3632 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.1263 -0.7995 -1.2056 26 1 1.6053 -1.7198 -1.2953 27 1 2.9243 -1.8411 -4.7318 28 1 0.5133 -2.2504 1.4393 29 1 1.1595 -3.7328 3.6350 30 1 2.5444 -3.3134 4.4887 31 1 5.9991 -0.2084 4.4236 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000709995233.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:53 Heat of formation + Delta-G solvation = -48.793340 kcal Electronic energy + Delta-G solvation = -16738.666157 eV Core-core repulsion = 13827.381534 eV Total energy + Delta-G solvation = -2911.284623 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 239.106 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.54045 -40.84982 -37.39794 -37.00434 -35.39159 -34.33421 -31.44225 -29.91490 -28.96196 -26.38714 -25.10684 -23.08128 -21.64733 -21.16065 -18.99112 -18.81980 -18.22931 -17.38590 -17.18214 -16.89146 -16.58107 -15.96827 -15.81345 -15.08768 -14.50443 -14.29106 -13.93652 -13.71552 -13.16333 -12.84862 -12.71556 -12.60209 -12.40930 -12.18262 -12.09064 -11.91772 -11.77646 -11.48484 -11.35922 -10.58960 -10.17766 -8.44216 -8.21202 -6.33434 0.33840 1.29817 1.44738 1.46291 1.52464 1.57722 2.15009 2.20531 2.43546 3.10936 3.14385 3.59066 3.98700 4.13697 4.22195 4.40255 4.48409 4.58571 4.92103 5.00311 5.14061 5.29690 5.37177 5.46314 5.50888 5.70966 5.92445 6.14457 6.57039 6.80989 6.86553 7.08861 7.19525 7.36678 8.90961 Molecular weight = 239.11amu Principal moments of inertia in cm(-1) A = 0.036621 B = 0.005495 C = 0.005222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.404646 B = 5094.422702 C = 5360.692052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.150 3.850 3 H 0.098 0.902 4 C 0.029 3.971 5 C -0.530 4.530 6 H 0.080 0.920 7 C 0.003 3.997 8 N -0.934 5.934 9 Si 0.968 3.032 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.253 1.253 13 N -0.239 5.239 14 C -0.101 4.101 15 C 0.145 3.855 16 N -0.846 5.846 17 C -0.106 4.106 18 C 0.585 3.415 19 O -0.538 6.538 20 O -0.502 6.502 21 N -0.247 5.247 22 H 0.074 0.926 23 H 0.091 0.909 24 H 0.070 0.930 25 H -0.017 1.017 26 H 0.006 0.994 27 H 0.263 0.737 28 H 0.204 0.796 29 H 0.412 0.588 30 H 0.408 0.592 31 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.644 0.610 12.633 13.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.051 3.949 3 H 0.116 0.884 4 C -0.009 4.009 5 C -0.569 4.569 6 H 0.098 0.902 7 C -0.196 4.196 8 N -0.574 5.574 9 Si 0.792 3.208 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.177 1.177 13 N -0.033 5.033 14 C -0.248 4.248 15 C 0.033 3.967 16 N -0.394 5.394 17 C -0.261 4.261 18 C 0.430 3.570 19 O -0.428 6.428 20 O -0.314 6.314 21 N -0.090 5.090 22 H 0.093 0.907 23 H 0.109 0.891 24 H 0.089 0.911 25 H 0.001 0.999 26 H 0.025 0.975 27 H 0.072 0.928 28 H 0.220 0.780 29 H 0.243 0.757 30 H 0.239 0.761 31 H 0.294 0.706 Dipole moment (debyes) X Y Z Total from point charges -3.385 1.303 11.856 12.399 hybrid contribution 0.378 -0.844 -0.016 0.924 sum -3.007 0.459 11.840 12.225 Atomic orbital electron populations 1.21998 0.89950 1.03880 1.03775 1.21980 0.97189 0.96344 0.79380 0.88404 1.19284 0.94608 0.95655 0.91335 1.21442 1.35589 1.09118 0.90703 0.90234 1.25961 0.94834 0.95898 1.02875 1.70123 1.39683 1.23004 1.24618 0.85401 0.79279 0.78110 0.77991 1.20379 1.21338 1.17655 1.46011 1.15086 1.21740 1.20450 1.22405 1.05732 0.97858 0.98843 1.17617 0.93334 0.92298 0.93450 1.41507 1.33226 1.33024 1.31623 1.20476 1.01170 1.03188 1.01221 1.19053 0.79585 0.77298 0.81094 1.90787 1.76712 1.40843 1.34459 1.84654 1.37127 1.52247 1.57387 1.73556 1.05567 1.24260 1.05577 0.90709 0.89076 0.91135 0.99900 0.97515 0.92797 0.77965 0.75748 0.76093 0.70583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.11 8.62 71.98 0.62 -3.49 16 2 C 0.15 5.74 3.22 44.99 0.14 5.89 16 3 H 0.10 3.76 8.14 -2.39 -0.02 3.74 16 4 C 0.03 1.45 4.77 29.85 0.14 1.59 16 5 C -0.53 -27.27 8.41 25.60 0.22 -27.05 16 6 H 0.08 3.73 7.06 -2.91 -0.02 3.71 16 7 C 0.00 0.14 5.46 84.65 0.46 0.60 16 8 N -0.93 -55.02 13.29 21.45 0.28 -54.73 16 9 Si 0.97 41.60 29.54 68.60 2.03 43.63 16 10 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.25 -10.01 7.11 99.48 0.71 -9.31 16 13 N -0.24 -8.99 3.24 -326.23 -1.06 -10.05 16 14 C -0.10 -3.26 10.60 83.53 0.89 -2.37 16 15 C 0.15 4.66 7.37 38.18 0.28 4.94 16 16 N -0.85 -20.78 9.15 -50.88 -0.47 -21.24 16 17 C -0.11 -3.85 7.16 42.42 0.30 -3.55 16 18 C 0.59 18.93 8.33 70.21 0.58 19.52 16 19 O -0.54 -17.44 16.14 19.78 0.32 -17.12 16 20 O -0.50 -13.45 13.44 -56.76 -0.76 -14.21 16 21 N -0.25 -9.91 11.98 -48.09 -0.58 -10.48 16 22 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 23 H 0.09 2.77 6.95 -2.39 -0.02 2.75 16 24 H 0.07 1.96 7.07 -2.39 -0.02 1.95 16 25 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 26 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 28 H 0.20 5.17 7.19 -2.91 -0.02 5.15 16 29 H 0.41 7.48 8.96 -92.71 -0.83 6.65 16 30 H 0.41 10.10 7.27 -92.71 -0.67 9.43 16 31 H 0.43 6.20 9.11 -74.06 -0.67 5.53 16 Total: -1.00 -68.69 276.52 2.43 -66.26 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: -0.98 Total: 21.86 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: 3.64 Total: -3.91 kcal Atomic # 7 Polarization: -94.70 SS G_CDS: -1.81 Total: -96.51 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.44 Total: -31.33 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.63 kcal Total: -68.69 2.43 -66.26 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000709995233.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.468 kcal (2) G-P(sol) polarization free energy of solvation -68.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds