Wall clock time and date at job start Mon Mar 30 2020 04:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.55360 * 2 1 4 4 C 1.53003 * 117.49953 * 128.49422 * 3 2 1 5 5 C 1.52994 * 60.00169 * 252.51105 * 4 3 2 6 6 C 1.53298 * 109.51314 * 239.87208 * 2 1 3 7 7 N 1.47149 * 108.38486 * 292.38067 * 6 2 1 8 8 C 1.34772 * 120.98132 * 129.44541 * 7 6 2 9 9 O 1.21694 * 119.99915 * 175.32042 * 8 7 6 10 10 C 1.46376 * 119.99968 * 355.31429 * 8 7 6 11 11 H 1.07997 * 119.99930 * 7.64194 * 10 8 7 12 12 C 1.40046 * 119.99710 * 187.63818 * 10 8 7 13 13 N 1.30674 * 120.00334 * 0.02562 * 12 10 8 14 14 Si 1.86804 * 120.00107 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47125 * 89.99766 * 14 12 10 16 16 H 1.48499 * 109.47357 * 210.00180 * 14 12 10 17 17 H 1.48500 * 109.46869 * 330.00224 * 14 12 10 18 18 C 1.47157 * 118.03393 * 309.46250 * 7 6 2 19 19 C 1.53296 * 108.38258 * 50.53835 * 18 7 6 20 20 O 1.42958 * 109.51361 * 120.12686 * 2 1 3 21 21 H 1.08994 * 109.47325 * 180.12412 * 1 2 3 22 22 H 1.09004 * 109.47214 * 300.12858 * 1 2 3 23 23 H 1.09005 * 109.47362 * 60.12206 * 1 2 3 24 24 H 1.08998 * 115.55137 * 274.20571 * 3 2 1 25 25 H 1.09005 * 117.49618 * 0.02562 * 4 3 2 26 26 H 1.08995 * 117.50078 * 145.02135 * 4 3 2 27 27 H 1.09003 * 117.50147 * 252.51534 * 5 4 3 28 28 H 1.09000 * 117.50288 * 107.48697 * 5 4 3 29 29 H 1.09002 * 109.67597 * 52.10389 * 6 2 1 30 30 H 1.08999 * 109.68139 * 172.64971 * 6 2 1 31 31 H 0.97000 * 120.00216 * 180.02562 * 13 12 10 32 32 H 1.09000 * 109.67957 * 170.26086 * 18 7 6 33 33 H 1.09000 * 109.67642 * 290.81281 * 18 7 6 34 34 H 1.08995 * 109.51412 * 67.62329 * 19 18 7 35 35 H 1.09003 * 109.50503 * 187.72309 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0420 1.4418 0.0000 4 6 3.0745 1.8248 1.0622 5 6 1.6366 2.3355 1.1739 6 6 2.0420 -0.7253 -1.2497 7 7 1.6959 -2.1507 -1.1336 8 6 1.0708 -2.7969 -2.1376 9 8 0.8691 -3.9944 -2.0581 10 6 0.6344 -2.0583 -3.3237 11 1 0.9201 -1.0247 -3.4516 12 6 -0.1535 -2.6921 -4.2926 13 7 -0.4995 -3.9427 -4.1376 14 14 -0.7098 -1.7499 -5.8066 15 1 0.3000 -1.9042 -6.8845 16 1 -2.0150 -2.2849 -6.2707 17 1 -0.8566 -0.3115 -5.4681 18 6 2.0521 -2.8497 0.1114 19 6 1.5395 -2.0210 1.2948 20 8 2.0075 -0.6763 1.1654 21 1 -0.3633 -1.0276 0.0022 22 1 -0.3634 0.5158 0.8889 23 1 -0.3634 0.5120 -0.8911 24 1 2.1314 1.9089 -0.9807 25 1 3.3893 1.0494 1.7608 26 1 3.8435 2.5439 0.7804 27 1 1.4596 3.3906 0.9653 28 1 1.0050 1.8963 1.9461 29 1 1.5704 -0.3041 -2.1376 30 1 3.1240 -0.6147 -1.3208 31 1 -1.0449 -4.3818 -4.8089 32 1 1.5872 -3.8355 0.1248 33 1 3.1352 -2.9531 0.1773 34 1 0.4496 -2.0284 1.2995 35 1 1.9106 -2.4484 2.2263 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597922708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:00:46 Heat of formation + Delta-G solvation = -49.670108 kcal Electronic energy + Delta-G solvation = -18102.340698 eV Core-core repulsion = 15294.558399 eV Total energy + Delta-G solvation = -2807.782299 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 239.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.79578 -37.20610 -35.95776 -33.37975 -32.56103 -31.37441 -28.71334 -26.44529 -25.45734 -23.48325 -22.06632 -21.82990 -19.39733 -18.75322 -16.74916 -16.29675 -15.60700 -15.51375 -14.49138 -14.46077 -14.23710 -14.16741 -13.48071 -13.12606 -12.43596 -12.31374 -11.97450 -11.46913 -11.42227 -11.29203 -11.24177 -10.98629 -10.89425 -10.82009 -10.41955 -10.27564 -10.11521 -10.01763 -9.72233 -9.28733 -8.88828 -7.63567 -7.19935 -6.24624 -4.68884 3.10749 3.17777 3.20389 3.89313 4.01872 4.13638 4.44938 4.51508 4.88974 5.08837 5.15314 5.41604 5.50671 5.57798 5.62610 5.67229 5.78624 5.84337 5.91704 5.98337 6.06271 6.18747 6.26570 6.38565 6.39757 6.42805 6.49864 6.55663 6.70838 7.40742 7.51064 7.63534 8.07367 8.29760 8.97811 9.37413 10.52542 10.70880 Molecular weight = 239.13amu Principal moments of inertia in cm(-1) A = 0.028919 B = 0.008175 C = 0.006862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.987315 B = 3424.076374 C = 4079.489056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.131 3.869 3 C -0.141 4.141 4 C -0.166 4.166 5 C -0.175 4.175 6 C 0.107 3.893 7 N -0.642 5.642 8 C 0.561 3.439 9 O -0.578 6.578 10 C -0.543 4.543 11 H 0.072 0.928 12 C 0.088 3.912 13 N -0.769 5.769 14 Si 0.906 3.094 15 H -0.271 1.271 16 H -0.279 1.279 17 H -0.264 1.264 18 C 0.087 3.913 19 C 0.048 3.952 20 O -0.379 6.379 21 H 0.067 0.933 22 H 0.052 0.948 23 H 0.067 0.933 24 H 0.115 0.885 25 H 0.103 0.897 26 H 0.087 0.913 27 H 0.089 0.911 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.049 0.951 31 H 0.269 0.731 32 H 0.089 0.911 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.035 10.525 7.645 13.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.091 3.909 3 C -0.159 4.159 4 C -0.203 4.203 5 C -0.212 4.212 6 C -0.018 4.018 7 N -0.381 5.381 8 C 0.368 3.632 9 O -0.460 6.460 10 C -0.579 4.579 11 H 0.090 0.910 12 C -0.132 4.132 13 N -0.397 5.397 14 Si 0.730 3.270 15 H -0.197 1.197 16 H -0.204 1.204 17 H -0.188 1.188 18 C -0.038 4.038 19 C -0.030 4.030 20 O -0.298 6.298 21 H 0.086 0.914 22 H 0.071 0.929 23 H 0.086 0.914 24 H 0.133 0.867 25 H 0.122 0.878 26 H 0.105 0.895 27 H 0.107 0.893 28 H 0.111 0.889 29 H 0.117 0.883 30 H 0.067 0.933 31 H 0.080 0.920 32 H 0.108 0.892 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.927 9.749 7.728 12.780 hybrid contribution -0.404 0.373 -0.928 1.079 sum 2.523 10.122 6.800 12.452 Atomic orbital electron populations 1.22230 0.95105 1.03043 1.01845 1.21279 0.93294 0.89787 0.86546 1.22210 1.04791 0.93744 0.95191 1.22829 0.91931 1.03004 1.02546 1.22872 0.98644 0.98649 1.01002 1.22001 0.98893 0.83317 0.97607 1.48243 1.64469 1.08922 1.16462 1.18256 0.76359 0.86679 0.81940 1.90593 1.59690 1.15217 1.80511 1.20922 1.34343 0.98412 1.04260 0.90983 1.25719 0.94439 0.94486 0.98519 1.70003 1.27028 1.10344 1.32345 0.86402 0.78429 0.80460 0.81703 1.19667 1.20417 1.18823 1.21790 0.98926 0.97615 0.85448 1.22970 0.98973 0.82619 0.98405 1.87831 1.72581 1.25627 1.43803 0.91441 0.92890 0.91371 0.86739 0.87816 0.89478 0.89273 0.88859 0.88257 0.93279 0.92033 0.89231 0.93379 0.92818 0.89144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 7.94 37.16 0.29 -2.46 16 2 C 0.13 2.16 0.92 -90.47 -0.08 2.08 16 3 C -0.14 -1.93 5.16 -90.62 -0.47 -2.39 16 4 C -0.17 -2.06 9.87 -26.73 -0.26 -2.32 16 5 C -0.17 -2.08 9.68 -26.73 -0.26 -2.34 16 6 C 0.11 2.06 5.21 -3.53 -0.02 2.04 16 7 N -0.64 -14.78 2.54 -173.93 -0.44 -15.22 16 8 C 0.56 15.92 7.62 -12.99 -0.10 15.82 16 9 O -0.58 -18.64 14.56 5.19 0.08 -18.57 16 10 C -0.54 -15.01 8.86 -35.63 -0.32 -15.32 16 11 H 0.07 1.82 5.73 -52.49 -0.30 1.51 16 12 C 0.09 2.42 5.50 -17.37 -0.10 2.33 16 13 N -0.77 -22.81 11.86 55.55 0.66 -22.16 16 14 Si 0.91 19.82 29.56 -169.99 -5.02 14.79 16 15 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 16 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 17 H -0.26 -5.54 7.11 56.52 0.40 -5.13 16 18 C 0.09 1.74 6.62 -3.53 -0.02 1.71 16 19 C 0.05 0.80 6.60 37.31 0.25 1.04 16 20 O -0.38 -6.37 8.58 -35.23 -0.30 -6.67 16 21 H 0.07 1.30 6.11 -51.93 -0.32 0.98 16 22 H 0.05 0.78 7.28 -51.93 -0.38 0.40 16 23 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 24 H 0.11 1.44 8.11 -51.93 -0.42 1.02 16 25 H 0.10 1.41 7.06 -51.93 -0.37 1.04 16 26 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.09 1.16 7.60 -51.93 -0.39 0.77 16 29 H 0.10 1.97 5.40 -51.93 -0.28 1.69 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.27 7.25 8.29 -40.82 -0.34 6.91 16 32 H 0.09 1.96 7.12 -51.93 -0.37 1.59 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.93 6.25 -51.93 -0.32 0.60 16 35 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 280.18 15.07 4.22 4.22 Total: -1.00 -32.85 280.18 -6.72 -39.57 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -4.82 Total: 3.84 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: -1.08 Total: 0.19 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.22 Total: -37.38 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.23 Total: -25.24 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -32.85 -6.72 -39.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597922708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.098 kcal (2) G-P(sol) polarization free energy of solvation -32.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds